Wall clock time and date at job start Tue Mar 31 2020 14:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00032 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00452 * 3 2 1 6 6 H 1.48502 * 109.46714 * 149.99906 * 3 2 1 7 7 C 1.38808 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99428 * 163.07159 * 7 2 1 9 9 N 1.36929 * 120.00274 * 343.07890 * 7 2 1 10 10 C 1.46922 * 120.63132 * 331.84376 * 9 7 2 11 11 C 1.53193 * 108.77906 * 233.58966 * 10 9 7 12 12 C 1.53036 * 109.31252 * 305.36770 * 11 10 9 13 13 N 1.46899 * 109.46056 * 181.38586 * 12 11 10 14 14 C 1.46906 * 110.99976 * 154.96999 * 13 12 11 15 15 C 1.50699 * 109.46770 * 179.97438 * 14 13 12 16 16 C 1.38329 * 120.01339 * 90.00530 * 15 14 13 17 17 Cl 1.73601 * 120.00785 * 359.69458 * 16 15 14 18 18 C 1.38363 * 119.98818 * 179.97438 * 16 15 14 19 19 C 1.38219 * 120.01068 * 359.97438 * 18 16 15 20 20 C 1.38219 * 120.03042 * 0.02562 * 19 18 16 21 21 C 1.38330 * 120.01503 * 269.97380 * 15 14 13 22 22 Cl 1.73601 * 120.00532 * 0.02562 * 21 15 14 23 23 C 1.53037 * 109.53162 * 61.36817 * 12 11 10 24 24 C 1.46930 * 120.63524 * 151.82645 * 9 7 2 25 25 H 0.96992 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.58996 * 113.80307 * 10 9 7 27 27 H 1.09006 * 109.70263 * 353.44300 * 10 9 7 28 28 H 1.08997 * 109.50366 * 185.41032 * 11 10 9 29 29 H 1.09003 * 109.52144 * 65.32883 * 11 10 9 30 30 H 1.09005 * 109.45635 * 301.35294 * 12 11 10 31 31 H 1.00902 * 110.99925 * 278.91479 * 13 12 11 32 32 H 1.09002 * 109.47070 * 60.00127 * 14 13 12 33 33 H 1.08998 * 109.47180 * 299.99802 * 14 13 12 34 34 H 1.07996 * 119.99566 * 179.97438 * 18 16 15 35 35 H 1.08001 * 119.98473 * 180.02562 * 19 18 16 36 36 H 1.08001 * 119.99405 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.49637 * 58.57828 * 23 12 11 38 38 H 1.09003 * 109.50249 * 178.68344 * 23 12 11 39 39 H 1.09000 * 109.58297 * 246.20206 * 24 9 7 40 40 H 1.09007 * 109.57944 * 6.47462 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2221 -0.2729 9 7 1.3702 -2.3625 0.3441 10 6 0.2262 -2.3410 1.2657 11 6 0.4975 -3.3211 2.4114 12 6 0.8122 -4.7022 1.8322 13 7 1.0404 -5.6525 2.9290 14 6 0.7596 -7.0291 2.4998 15 6 1.0049 -7.9732 3.6485 16 6 -0.0226 -8.2821 4.5217 17 17 -1.5929 -7.5761 4.2992 18 6 0.2030 -9.1494 5.5759 19 6 1.4546 -9.7075 5.7562 20 6 2.4816 -9.3993 4.8841 21 6 2.2573 -8.5318 3.8298 22 17 3.5473 -8.1449 2.7344 23 6 2.0678 -4.6178 0.9613 24 6 1.8140 -3.6527 -0.2010 25 1 -0.4850 0.8400 0.0004 26 1 -0.6769 -2.6412 0.7343 27 1 0.0968 -1.3360 1.6675 28 1 -0.3830 -3.3866 3.0505 29 1 1.3470 -2.9702 2.9974 30 1 -0.0279 -5.0419 1.2264 31 1 1.9794 -5.5705 3.2890 32 1 1.4142 -7.2911 1.6685 33 1 -0.2801 -7.1056 2.1817 34 1 -0.5989 -9.3904 6.2579 35 1 1.6301 -10.3848 6.5790 36 1 3.4595 -9.8354 5.0258 37 1 2.9024 -4.2543 1.5606 38 1 2.3049 -5.6063 0.5679 39 1 1.0404 -4.0598 -0.8522 40 1 2.7334 -3.5123 -0.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:21 Heat of formation + Delta-G solvation = 13.193623 kcal Electronic energy + Delta-G solvation = -23272.502656 eV Core-core repulsion = 19752.257701 eV Total energy + Delta-G solvation = -3520.244954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.70404 -39.53516 -37.71361 -37.19783 -36.76536 -34.36610 -32.69674 -31.60508 -31.57664 -30.40864 -27.17814 -25.66754 -23.87282 -23.73084 -23.03524 -22.41858 -20.88956 -18.82826 -18.21223 -17.27079 -16.95409 -16.63907 -16.19524 -15.91919 -15.37407 -15.30340 -15.25439 -14.89311 -14.73267 -14.62028 -13.96040 -13.86701 -13.50053 -13.25865 -13.17456 -13.03979 -12.85008 -12.61661 -12.56955 -12.43767 -12.06718 -12.02492 -11.97218 -11.91541 -11.78345 -11.66651 -11.40844 -11.18646 -10.54707 -9.88121 -9.70363 -9.27928 -8.68481 -7.87589 -5.33085 0.00471 0.04497 0.90058 1.33705 1.45772 1.47541 1.57423 2.42560 2.51115 3.21104 3.31217 3.63450 3.69589 3.80121 3.91975 3.95851 4.15144 4.24385 4.37137 4.42128 4.47090 4.47587 4.57121 4.71566 4.76180 4.87030 4.97407 5.03190 5.09319 5.14368 5.17955 5.24005 5.27025 5.32520 5.51864 5.61591 5.64542 5.73430 6.05675 6.38955 6.42642 7.14852 7.85970 8.38130 9.18993 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.003063 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.175118 B = 9139.567687 C =10079.691473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.108 4.108 12 C 0.111 3.889 13 N -0.669 5.669 14 C 0.093 3.907 15 C -0.080 4.080 16 C -0.022 4.022 17 Cl -0.061 7.061 18 C -0.109 4.109 19 C -0.086 4.086 20 C -0.107 4.107 21 C -0.034 4.034 22 Cl -0.063 7.063 23 C -0.142 4.142 24 C 0.145 3.855 25 H 0.250 0.750 26 H -0.006 1.006 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.340 0.660 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.012 0.988 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -24.277 13.109 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.148 4.148 12 C 0.001 3.999 13 N -0.299 5.299 14 C -0.036 4.036 15 C -0.082 4.082 16 C -0.050 4.050 17 Cl -0.031 7.031 18 C -0.128 4.128 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.061 4.061 22 Cl -0.034 7.034 23 C -0.182 4.182 24 C 0.019 3.981 25 H 0.059 0.941 26 H 0.012 0.988 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.177 0.823 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.030 0.970 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.323 -23.952 13.248 27.470 hybrid contribution 0.810 1.231 -1.144 1.865 sum 3.132 -22.721 12.104 25.934 Atomic orbital electron populations 1.70189 1.06679 1.25864 1.55312 1.25810 0.96054 1.01517 1.01209 0.85286 0.78082 0.79544 0.77590 1.21071 1.21768 1.19578 1.19490 0.92774 0.86114 1.41111 0.91780 1.44319 1.35971 1.02282 1.50797 1.20562 0.87612 0.97531 0.88901 1.21908 1.00591 0.94471 0.97819 1.21245 0.96488 0.91873 0.90299 1.60674 1.32575 1.02861 1.33748 1.20920 1.02198 0.87074 0.93365 1.19480 0.91783 0.98902 0.98021 1.20853 0.87189 0.99018 0.97892 1.98396 1.24832 1.83281 1.96638 1.21504 0.99543 0.95512 0.96218 1.21487 0.90616 0.98965 0.99332 1.21474 1.01907 0.96463 0.92750 1.20900 0.88773 1.01031 0.95430 1.98396 1.48569 1.93452 1.62979 1.22488 0.98413 0.98959 0.98370 1.20959 0.97109 0.86067 0.93942 0.94089 0.98753 0.92848 0.91875 0.93459 0.91737 0.84193 0.93299 0.90029 0.82378 0.80579 0.82266 0.92603 0.91090 0.96970 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 11.19 21.65 0.24 -56.31 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 3 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.26 -14.99 9.58 84.03 0.81 -14.18 16 8 H 0.06 3.54 7.89 -2.91 -0.02 3.52 16 9 N -0.61 -31.65 2.99 -699.08 -2.09 -33.75 16 10 C 0.18 9.04 5.30 86.36 0.46 9.49 16 11 C -0.11 -4.31 5.69 30.67 0.17 -4.14 16 12 C 0.11 3.73 2.43 44.94 0.11 3.84 16 13 N -0.67 -18.85 6.24 -495.43 -3.09 -21.94 16 14 C 0.09 2.29 4.81 85.56 0.41 2.70 16 15 C -0.08 -1.71 5.40 -19.82 -0.11 -1.82 16 16 C -0.02 -0.43 6.31 22.32 0.14 -0.29 16 17 Cl -0.06 -1.34 27.30 -2.72 -0.07 -1.41 16 18 C -0.11 -1.49 9.83 22.29 0.22 -1.27 16 19 C -0.09 -0.87 10.04 22.26 0.22 -0.64 16 20 C -0.11 -1.40 9.83 22.29 0.22 -1.18 16 21 C -0.03 -0.63 6.31 22.32 0.14 -0.49 16 22 Cl -0.06 -1.24 27.30 -2.72 -0.07 -1.31 16 23 C -0.14 -4.85 5.33 30.67 0.16 -4.68 16 24 C 0.15 6.22 6.52 86.36 0.56 6.78 16 25 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.05 3.03 6.07 -2.38 -0.01 3.01 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 2.27 7.80 -2.38 -0.02 2.25 16 31 H 0.34 9.43 8.47 -89.69 -0.76 8.67 16 32 H 0.05 1.20 6.17 -2.39 -0.01 1.19 16 33 H 0.08 2.12 6.83 -2.39 -0.02 2.10 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.09 7.42 -2.39 -0.02 2.07 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.05 2.17 7.93 -2.38 -0.02 2.15 16 Total: -1.00 -65.10 350.00 1.18 -63.92 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.30 Total: 11.35 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.94 Total: -8.35 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.94 Total: -112.00 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.15 Total: -2.72 kcal Total: -65.10 1.18 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.111 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds