Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46899 * 109.46583 * 178.61346 * 12 11 10 14 14 C 1.46903 * 111.00029 * 205.00192 * 13 12 11 15 15 C 1.50700 * 109.46813 * 179.97438 * 14 13 12 16 16 C 1.38215 * 119.99861 * 259.72436 * 15 14 13 17 17 C 1.38336 * 120.00128 * 179.72444 * 16 15 14 18 18 Cl 1.73594 * 120.00221 * 180.29870 * 17 16 15 19 19 C 1.38374 * 119.99794 * 0.57076 * 17 16 15 20 20 C 1.38187 * 120.00074 * 359.70010 * 19 17 16 21 21 C 1.38330 * 120.00236 * 79.99525 * 15 14 13 22 22 Cl 1.73607 * 120.00057 * 0.02562 * 21 15 14 23 23 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 24 24 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 25 25 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 27 27 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 28 28 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 29 29 H 1.08998 * 109.49941 * 294.60655 * 11 10 9 30 30 H 1.09009 * 109.46191 * 58.63514 * 12 11 10 31 31 H 1.00899 * 110.99649 * 328.95347 * 13 12 11 32 32 H 1.09000 * 109.47005 * 299.99584 * 14 13 12 33 33 H 1.08997 * 109.47380 * 59.99786 * 14 13 12 34 34 H 1.07997 * 120.00035 * 359.97438 * 16 15 14 35 35 H 1.08003 * 120.00561 * 179.68533 * 19 17 16 36 36 H 1.07992 * 120.00364 * 179.97438 * 20 19 17 37 37 H 1.09000 * 109.50000 * 181.31601 * 23 12 11 38 38 H 1.09003 * 109.49095 * 301.40810 * 23 12 11 39 39 H 1.09000 * 109.47125 * 113.75280 * 24 9 7 40 40 H 1.09000 * 109.71403 * 353.46652 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0327 -5.6585 2.9224 14 6 -0.2379 -6.2183 3.4022 15 6 0.0323 -7.1894 4.5225 16 6 0.0378 -8.5487 4.2726 17 6 0.2915 -9.4399 5.2997 18 17 0.3061 -11.1468 4.9842 19 6 0.5281 -8.9709 6.5799 20 6 0.5171 -7.6121 6.8310 21 6 0.2694 -6.7205 5.8022 22 17 0.2549 -5.0134 6.1178 23 6 0.4929 -3.3255 2.4083 24 6 0.2251 -2.3429 1.2640 25 1 -0.4849 0.8401 0.0004 26 1 2.7376 -3.5124 -0.7656 27 1 1.0448 -4.0591 -0.8569 28 1 2.3024 -5.6088 0.5642 29 1 2.8992 -4.2594 1.5609 30 1 -0.0313 -5.0433 1.2186 31 1 1.6668 -6.3908 2.6402 32 1 -0.8759 -5.4125 3.7653 33 1 -0.7381 -6.7374 2.5847 34 1 -0.1520 -8.9150 3.2745 35 1 0.7212 -9.6668 7.3830 36 1 0.7014 -7.2460 7.8301 37 1 -0.3893 -3.3916 3.0451 38 1 1.3415 -2.9764 2.9966 39 1 -0.6770 -2.6412 0.7298 40 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611080874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = 27.901058 kcal Electronic energy + Delta-G solvation = -22997.313156 eV Core-core repulsion = 19477.705964 eV Total energy + Delta-G solvation = -3519.607192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91410 -38.00534 -37.00468 -36.33233 -35.26212 -32.84483 -31.34036 -30.76625 -29.89616 -29.02170 -25.80037 -24.17079 -23.10926 -22.29402 -21.63773 -21.09099 -19.06009 -17.50191 -16.71222 -16.43213 -16.06220 -15.25432 -14.85828 -14.64670 -14.45799 -13.99691 -13.87457 -13.52594 -13.41696 -13.14871 -12.69645 -12.62247 -12.43312 -12.12388 -11.94706 -11.93028 -11.38470 -11.22051 -11.14970 -10.99539 -10.88018 -10.71780 -10.67383 -10.22726 -10.16699 -9.88192 -9.58085 -9.52857 -9.31255 -8.79935 -8.45119 -8.16796 -6.63533 -5.75521 -3.17679 0.64190 0.79960 1.70183 2.07512 3.10048 3.40872 3.46439 3.48195 4.21127 4.36151 4.52303 4.53300 4.71192 4.89194 5.04877 5.24049 5.38300 5.39227 5.45458 5.51340 5.59674 5.70834 5.74877 5.77484 5.91830 6.00377 6.15385 6.22450 6.35921 6.43080 6.60412 6.67475 6.78800 6.81855 7.01626 7.32746 7.44005 7.58650 7.72329 7.83157 8.49122 9.25192 9.88665 10.45512 11.33208 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002652 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.863043 B =10555.530410 C =11350.650938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.098 3.902 13 N -0.676 5.676 14 C 0.095 3.905 15 C -0.058 4.058 16 C -0.095 4.095 17 C -0.035 4.035 18 Cl -0.067 7.067 19 C -0.102 4.102 20 C -0.103 4.103 21 C -0.011 4.011 22 Cl -0.040 7.040 23 C -0.122 4.122 24 C 0.171 3.829 25 H 0.254 0.746 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.334 0.666 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -20.156 13.124 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.172 4.172 12 C -0.010 4.010 13 N -0.307 5.307 14 C -0.034 4.034 15 C -0.060 4.060 16 C -0.114 4.114 17 C -0.062 4.062 18 Cl -0.039 7.039 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.038 4.038 22 Cl -0.011 7.011 23 C -0.162 4.162 24 C 0.045 3.955 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.152 0.848 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.172 -19.487 13.569 23.775 hybrid contribution 0.173 0.127 -0.665 0.699 sum -0.998 -19.360 12.904 23.288 Atomic orbital electron populations 1.70024 1.05260 1.25548 1.53992 1.25033 0.95276 0.98373 1.00953 0.86378 0.78922 0.83392 0.78130 1.20919 1.21663 1.21013 1.19139 0.92464 0.84849 1.41668 0.91814 1.44037 1.35832 1.01449 1.50088 1.20839 0.97571 0.86909 0.92518 1.22208 0.97467 0.98905 0.98634 1.21498 0.96997 0.93004 0.89514 1.60638 1.11167 1.19398 1.39490 1.20954 0.93401 0.95589 0.93440 1.19757 0.98751 0.93451 0.94018 1.20948 1.00043 0.91316 0.99112 1.20922 1.04915 0.85180 0.95150 1.98381 1.96984 1.12542 1.95947 1.20980 1.00308 0.95361 0.95452 1.21045 1.00153 0.91784 0.99195 1.20944 1.02029 0.86706 0.94154 1.98424 1.96362 1.10759 1.95519 1.22171 1.00274 0.94267 0.99468 1.20796 0.88431 0.98272 0.88051 0.93632 0.92729 0.96739 0.93540 0.91451 0.94593 0.84797 0.89068 0.94123 0.84283 0.84236 0.84036 0.93720 0.92092 0.96805 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.90 3.00 -172.30 -0.52 -15.42 16 10 C 0.15 3.11 6.51 -3.71 -0.02 3.08 16 11 C -0.13 -2.26 5.36 -26.61 -0.14 -2.40 16 12 C 0.10 1.62 2.46 -67.67 -0.17 1.46 16 13 N -0.68 -9.22 6.30 -107.94 -0.68 -9.90 16 14 C 0.09 1.14 5.03 -4.97 -0.02 1.12 16 15 C -0.06 -0.63 5.39 -104.60 -0.56 -1.19 16 16 C -0.09 -0.90 9.45 -39.55 -0.37 -1.27 16 17 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 18 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 19 C -0.10 -0.83 9.83 -39.55 -0.39 -1.22 16 20 C -0.10 -0.91 9.83 -39.55 -0.39 -1.29 16 21 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 22 Cl -0.04 -0.49 27.52 -51.86 -1.43 -1.92 16 23 C -0.12 -2.37 5.59 -26.61 -0.15 -2.52 16 24 C 0.17 4.10 5.30 -3.70 -0.02 4.08 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.61 7.80 -51.92 -0.40 0.21 16 31 H 0.33 4.17 8.32 -39.29 -0.33 3.84 16 32 H 0.09 1.20 6.62 -51.93 -0.34 0.86 16 33 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 34 H 0.14 1.15 8.03 -52.49 -0.42 0.73 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.04 0.81 7.42 -51.93 -0.39 0.43 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -29.23 352.85 -11.71 -40.95 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.53 Total: 0.21 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.97 Total: -8.22 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.58 Total: -51.13 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.93 Total: -3.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.23 -11.71 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611080874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.847 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds