Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46899 * 109.46583 * 178.61346 * 12 11 10 14 14 C 1.46903 * 111.00029 * 205.00192 * 13 12 11 15 15 C 1.50700 * 109.46813 * 179.97438 * 14 13 12 16 16 C 1.38215 * 119.99861 * 259.72436 * 15 14 13 17 17 C 1.38336 * 120.00128 * 179.72444 * 16 15 14 18 18 Cl 1.73594 * 120.00221 * 180.29870 * 17 16 15 19 19 C 1.38374 * 119.99794 * 0.57076 * 17 16 15 20 20 C 1.38187 * 120.00074 * 359.70010 * 19 17 16 21 21 C 1.38330 * 120.00236 * 79.99525 * 15 14 13 22 22 Cl 1.73607 * 120.00057 * 0.02562 * 21 15 14 23 23 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 24 24 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 25 25 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 27 27 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 28 28 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 29 29 H 1.08998 * 109.49941 * 294.60655 * 11 10 9 30 30 H 1.09009 * 109.46191 * 58.63514 * 12 11 10 31 31 H 1.00899 * 110.99649 * 328.95347 * 13 12 11 32 32 H 1.09000 * 109.47005 * 299.99584 * 14 13 12 33 33 H 1.08997 * 109.47380 * 59.99786 * 14 13 12 34 34 H 1.07997 * 120.00035 * 359.97438 * 16 15 14 35 35 H 1.08003 * 120.00561 * 179.68533 * 19 17 16 36 36 H 1.07992 * 120.00364 * 179.97438 * 20 19 17 37 37 H 1.09000 * 109.50000 * 181.31601 * 23 12 11 38 38 H 1.09003 * 109.49095 * 301.40810 * 23 12 11 39 39 H 1.09000 * 109.47125 * 113.75280 * 24 9 7 40 40 H 1.09000 * 109.71403 * 353.46652 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0327 -5.6585 2.9224 14 6 -0.2379 -6.2183 3.4022 15 6 0.0323 -7.1894 4.5225 16 6 0.0378 -8.5487 4.2726 17 6 0.2915 -9.4399 5.2997 18 17 0.3061 -11.1468 4.9842 19 6 0.5281 -8.9709 6.5799 20 6 0.5171 -7.6121 6.8310 21 6 0.2694 -6.7205 5.8022 22 17 0.2549 -5.0134 6.1178 23 6 0.4929 -3.3255 2.4083 24 6 0.2251 -2.3429 1.2640 25 1 -0.4849 0.8401 0.0004 26 1 2.7376 -3.5124 -0.7656 27 1 1.0448 -4.0591 -0.8569 28 1 2.3024 -5.6088 0.5642 29 1 2.8992 -4.2594 1.5609 30 1 -0.0313 -5.0433 1.2186 31 1 1.6668 -6.3908 2.6402 32 1 -0.8759 -5.4125 3.7653 33 1 -0.7381 -6.7374 2.5847 34 1 -0.1520 -8.9150 3.2745 35 1 0.7212 -9.6668 7.3830 36 1 0.7014 -7.2460 7.8301 37 1 -0.3893 -3.3916 3.0451 38 1 1.3415 -2.9764 2.9966 39 1 -0.6770 -2.6412 0.7298 40 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611080874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = 12.177823 kcal Electronic energy + Delta-G solvation = -22997.994967 eV Core-core repulsion = 19477.705964 eV Total energy + Delta-G solvation = -3520.289002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68495 -39.48753 -37.75225 -37.15862 -36.65950 -34.37968 -32.71129 -31.60991 -31.54302 -30.47751 -27.18687 -25.73655 -23.88368 -23.81047 -23.01990 -22.25205 -20.70648 -18.71423 -18.20345 -17.27539 -16.94268 -16.74965 -16.22299 -15.86454 -15.66416 -15.29408 -15.16851 -14.83746 -14.72519 -14.54015 -13.85931 -13.81683 -13.63216 -13.29724 -13.16075 -12.96178 -12.82907 -12.74683 -12.55693 -12.43735 -12.04509 -11.96512 -11.95476 -11.87962 -11.75618 -11.58814 -11.25566 -11.13305 -10.53579 -10.08780 -9.56023 -9.31246 -8.67559 -7.86986 -5.32047 -0.09040 0.10205 1.01040 1.28360 1.46151 1.49137 1.55641 2.37308 2.51722 3.21060 3.31747 3.61619 3.67788 3.71700 3.98864 4.04615 4.12035 4.19478 4.36140 4.43999 4.47416 4.58357 4.66012 4.74568 4.81314 4.88827 4.95073 4.99567 5.07418 5.08653 5.14266 5.22762 5.25022 5.42773 5.53120 5.54489 5.65742 5.77512 6.10225 6.39875 6.54267 7.15808 7.87621 8.39086 9.19584 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002652 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.863043 B =10555.530410 C =11350.650938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.119 4.119 12 C 0.111 3.889 13 N -0.674 5.674 14 C 0.098 3.902 15 C -0.068 4.068 16 C -0.094 4.094 17 C -0.040 4.040 18 Cl -0.061 7.061 19 C -0.094 4.094 20 C -0.102 4.102 21 C -0.025 4.025 22 Cl -0.061 7.061 23 C -0.105 4.105 24 C 0.179 3.821 25 H 0.249 0.751 26 H 0.055 0.945 27 H 0.014 0.986 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.347 0.653 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.053 0.947 38 H 0.045 0.955 39 H -0.007 1.007 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -22.446 13.995 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.158 4.158 12 C 0.001 3.999 13 N -0.306 5.306 14 C -0.030 4.030 15 C -0.070 4.070 16 C -0.113 4.113 17 C -0.066 4.066 18 Cl -0.032 7.032 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.052 4.052 22 Cl -0.032 7.032 23 C -0.145 4.145 24 C 0.053 3.947 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.166 0.834 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.011 0.989 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.167 -21.823 14.443 26.170 hybrid contribution -0.144 0.710 -0.925 1.175 sum -0.310 -21.113 13.518 25.072 Atomic orbital electron populations 1.70180 1.06673 1.25859 1.55473 1.25798 0.96052 1.01507 1.01328 0.85364 0.77609 0.79280 0.78351 1.19931 1.21997 1.20572 1.19485 0.92787 0.86134 1.40923 0.91650 1.44311 1.35875 1.02441 1.50819 1.21019 0.97318 0.85881 0.94059 1.22022 0.97202 0.99556 0.97016 1.21196 0.96722 0.91962 0.89985 1.60436 1.12422 1.19760 1.37980 1.20887 0.92331 0.95536 0.94260 1.19614 1.00139 0.93698 0.93521 1.21040 0.99598 0.90746 0.99918 1.21047 1.04677 0.85496 0.95417 1.98389 1.96929 1.11948 1.95952 1.21271 0.98825 0.95394 0.95831 1.21267 0.99389 0.91813 0.99560 1.21113 1.03249 0.85903 0.94933 1.98417 1.96566 1.12617 1.95611 1.21885 0.99987 0.95113 0.97466 1.20564 0.87662 0.97480 0.89001 0.94151 0.92632 0.96805 0.89782 0.92371 0.94621 0.83423 0.90589 0.92906 0.83138 0.81827 0.82272 0.92805 0.93622 0.98861 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 11.20 21.65 0.24 -56.29 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.26 -14.79 9.58 84.03 0.81 -13.99 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -31.31 3.00 -699.03 -2.10 -33.40 16 10 C 0.14 5.89 6.51 86.36 0.56 6.46 16 11 C -0.12 -3.83 5.36 30.67 0.16 -3.66 16 12 C 0.11 3.50 2.46 44.94 0.11 3.61 16 13 N -0.67 -17.12 6.30 -495.42 -3.12 -20.24 16 14 C 0.10 2.21 5.03 85.56 0.43 2.64 16 15 C -0.07 -1.34 5.39 -19.85 -0.11 -1.45 16 16 C -0.09 -1.54 9.45 22.29 0.21 -1.33 16 17 C -0.04 -0.60 6.32 22.33 0.14 -0.46 16 18 Cl -0.06 -0.87 28.96 -2.72 -0.08 -0.95 16 19 C -0.09 -1.25 9.83 22.29 0.22 -1.03 16 20 C -0.10 -1.55 9.83 22.29 0.22 -1.33 16 21 C -0.02 -0.49 6.31 22.32 0.14 -0.35 16 22 Cl -0.06 -1.46 27.52 -2.72 -0.07 -1.54 16 23 C -0.10 -4.11 5.59 30.67 0.17 -3.93 16 24 C 0.18 8.90 5.30 86.36 0.46 9.36 16 25 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 2.12 8.10 -2.38 -0.02 2.10 16 29 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.16 7.80 -2.38 -0.02 1.14 16 31 H 0.35 7.63 8.32 -89.69 -0.75 6.88 16 32 H 0.08 1.95 6.62 -2.39 -0.02 1.94 16 33 H 0.05 1.07 7.91 -2.39 -0.02 1.05 16 34 H 0.15 2.06 8.03 -2.91 -0.02 2.04 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.05 1.98 7.42 -2.39 -0.02 1.97 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 Total: -1.00 -64.25 352.85 1.15 -63.10 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.31 Total: 9.52 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.94 Total: -7.98 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.97 Total: -109.93 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.15 Total: -2.48 kcal Total: -64.25 1.15 -63.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611080874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.275 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds