Wall clock time and date at job start Tue Mar 31 2020 14:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48497 * 109.46892 * 270.00517 * 3 2 1 5 5 H 1.48499 * 109.46916 * 30.00232 * 3 2 1 6 6 H 1.48495 * 109.47035 * 150.00244 * 3 2 1 7 7 C 1.37871 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00128 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.46949 * 111.00086 * 170.00332 * 10 9 7 12 12 C 1.53052 * 109.36531 * 183.19072 * 11 10 9 13 13 N 1.46960 * 109.36320 * 301.59709 * 12 11 10 14 14 C 1.46906 * 110.99763 * 183.18661 * 13 12 11 15 15 C 1.50707 * 109.46862 * 170.00287 * 14 13 12 16 16 C 1.38216 * 119.99684 * 104.99803 * 15 14 13 17 17 C 1.38337 * 119.99760 * 179.74629 * 16 15 14 18 18 Cl 1.73598 * 120.00239 * 180.23321 * 17 16 15 19 19 C 1.38375 * 119.99780 * 0.25775 * 17 16 15 20 20 C 1.38171 * 120.00153 * 0.02562 * 19 17 16 21 21 C 1.38328 * 119.99747 * 285.25568 * 15 14 13 22 22 Cl 1.73604 * 120.00477 * 0.02562 * 21 15 14 23 23 C 1.46954 * 110.87702 * 59.32383 * 13 12 11 24 24 C 1.46956 * 111.00129 * 293.80625 * 10 9 7 25 25 H 0.97001 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46775 * 60.00506 * 9 7 2 27 27 H 1.08996 * 109.47508 * 300.00487 * 9 7 2 28 28 H 1.09002 * 109.48982 * 63.22848 * 11 10 9 29 29 H 1.09000 * 109.49109 * 303.15863 * 11 10 9 30 30 H 1.09006 * 109.49122 * 181.63693 * 12 11 10 31 31 H 1.08994 * 109.48918 * 61.56892 * 12 11 10 32 32 H 1.08999 * 109.46831 * 50.00677 * 14 13 12 33 33 H 1.08998 * 109.47021 * 289.99896 * 14 13 12 34 34 H 1.08002 * 120.00562 * 0.03213 * 16 15 14 35 35 H 1.08005 * 119.99872 * 179.97438 * 19 17 16 36 36 H 1.08002 * 120.00313 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.49207 * 60.64681 * 23 13 12 38 38 H 1.09000 * 109.48882 * 180.70968 * 23 13 12 39 39 H 1.09003 * 109.48996 * 296.77657 * 24 10 9 40 40 H 1.09004 * 109.49184 * 56.82388 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0022 11 6 5.4505 -2.6248 -0.2410 12 6 5.9069 -4.0839 -0.3138 13 7 5.5609 -4.7659 0.9411 14 6 6.0507 -6.1509 0.9399 15 6 5.8990 -6.7385 2.3194 16 6 4.8913 -7.6491 2.5757 17 6 4.7554 -8.1924 3.8406 18 17 3.4935 -9.3407 4.1611 19 6 5.6249 -7.8202 4.8506 20 6 6.6287 -6.9055 4.5958 21 6 6.7651 -6.3624 3.3303 22 17 8.0262 -5.2131 3.0103 23 6 4.1116 -4.7200 1.1798 24 6 3.6553 -3.2609 1.2527 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8910 28 1 5.9696 -2.1218 0.5749 29 1 5.6802 -2.1245 -1.1818 30 1 6.9862 -4.1204 -0.4619 31 1 5.4083 -4.5797 -1.1466 32 1 7.1021 -6.1642 0.6529 33 1 5.4722 -6.7401 0.2284 34 1 4.2129 -7.9400 1.7873 35 1 5.5186 -8.2441 5.8382 36 1 7.3071 -6.6146 5.3842 37 1 3.5925 -5.2231 0.3639 38 1 3.8820 -5.2202 2.1206 39 1 4.1539 -2.7650 2.0855 40 1 2.5760 -3.2241 1.4010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611173711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:18 Heat of formation + Delta-G solvation = 26.623055 kcal Electronic energy + Delta-G solvation = -23287.061585 eV Core-core repulsion = 19767.398975 eV Total energy + Delta-G solvation = -3519.662610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06081 -38.58037 -36.97319 -36.35395 -35.35343 -32.69926 -31.78160 -30.79656 -30.44888 -28.65550 -26.32577 -23.94543 -23.30133 -22.99426 -21.53295 -20.97877 -19.22782 -17.44289 -16.79822 -16.35541 -16.09416 -15.85156 -14.84338 -14.57132 -14.41211 -14.31638 -14.11809 -14.02725 -13.53335 -13.40295 -13.01292 -12.63190 -12.48269 -12.30186 -12.07312 -11.92335 -11.84279 -11.40884 -11.23012 -11.11237 -10.95499 -10.90784 -10.79733 -10.55564 -10.38953 -10.06312 -9.82272 -9.34962 -9.24179 -8.78853 -8.56094 -8.20461 -7.35149 -6.04598 -4.01889 0.66757 0.82536 1.74989 2.04248 3.11094 3.29172 3.36668 3.39273 4.05318 4.33422 4.38731 4.42901 4.72866 4.78552 4.89645 5.03885 5.15294 5.26229 5.27877 5.40142 5.49670 5.53463 5.62089 5.71486 5.75834 5.82108 5.85847 5.96541 5.99747 6.11968 6.24492 6.32508 6.51286 6.65010 6.84922 6.98392 7.12270 7.22647 7.60726 7.92134 8.06393 8.66704 9.03324 9.57392 11.08490 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003222 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.506131 B = 8688.105339 C = 9769.007897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.055 3.945 12 C 0.064 3.936 13 N -0.528 5.528 14 C 0.091 3.909 15 C -0.054 4.054 16 C -0.093 4.093 17 C -0.033 4.033 18 Cl -0.065 7.065 19 C -0.101 4.101 20 C -0.103 4.103 21 C -0.009 4.009 22 Cl -0.048 7.048 23 C 0.058 3.942 24 C 0.069 3.931 25 H 0.263 0.737 26 H -0.011 1.011 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.853 -18.022 7.837 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.074 4.074 12 C -0.064 4.064 13 N -0.253 5.253 14 C -0.036 4.036 15 C -0.056 4.056 16 C -0.112 4.112 17 C -0.060 4.060 18 Cl -0.036 7.036 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.036 4.036 22 Cl -0.019 7.019 23 C -0.070 4.070 24 C -0.060 4.060 25 H 0.073 0.927 26 H 0.007 0.993 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.690 -17.874 7.813 25.034 hybrid contribution 0.297 0.977 0.056 1.023 sum 15.987 -16.897 7.870 24.557 Atomic orbital electron populations 1.69891 1.06122 1.26822 1.51146 1.24890 0.94718 0.98832 0.94838 0.86871 0.80347 0.84051 0.78562 1.20176 1.21216 1.19255 1.21027 0.88741 0.94674 1.50270 0.90207 1.20145 0.97022 0.84114 0.95051 1.62111 1.10374 1.19038 1.33857 1.22099 0.90221 0.94677 1.00433 1.22125 0.99543 0.94990 0.89720 1.62192 1.15064 1.12848 1.35182 1.21023 1.01649 0.89739 0.91227 1.19636 0.93932 0.95992 0.96041 1.20972 0.97841 0.96562 0.95839 1.20931 0.93439 0.96334 0.95284 1.98388 1.50949 1.58507 1.95733 1.20981 0.94174 0.97840 0.99032 1.21017 0.98750 0.96792 0.95610 1.20840 0.93554 0.94737 0.94504 1.98391 1.49618 1.58173 1.95713 1.22274 0.86220 0.98267 1.00266 1.21997 1.01704 0.91569 0.90686 0.92683 0.99336 0.95872 0.95038 0.90988 0.91027 0.94053 0.89293 0.93424 0.84163 0.84192 0.84095 0.94093 0.91182 0.95302 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.46 9.03 -34.44 -0.31 -14.77 16 8 H 0.08 2.46 7.38 -52.49 -0.39 2.07 16 9 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 10 N -0.53 -11.07 4.70 -235.91 -1.11 -12.18 16 11 C 0.05 0.94 5.61 -3.77 -0.02 0.91 16 12 C 0.06 0.89 5.61 -3.76 -0.02 0.87 16 13 N -0.53 -7.21 4.58 -235.90 -1.08 -8.29 16 14 C 0.09 1.00 4.42 -4.97 -0.02 0.98 16 15 C -0.05 -0.58 4.43 -104.59 -0.46 -1.04 16 16 C -0.09 -0.93 8.81 -39.55 -0.35 -1.28 16 17 C -0.03 -0.32 6.32 -39.49 -0.25 -0.57 16 18 Cl -0.06 -0.60 28.96 -51.86 -1.50 -2.10 16 19 C -0.10 -0.86 9.83 -39.56 -0.39 -1.25 16 20 C -0.10 -0.91 9.83 -39.55 -0.39 -1.30 16 21 C -0.01 -0.09 6.31 -39.50 -0.25 -0.34 16 22 Cl -0.05 -0.53 27.54 -51.86 -1.43 -1.95 16 23 C 0.06 0.89 5.42 -3.77 -0.02 0.87 16 24 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 27 H 0.02 0.57 7.45 -51.93 -0.39 0.18 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 33 H 0.05 0.49 7.93 -51.93 -0.41 0.08 16 34 H 0.14 1.28 8.00 -52.49 -0.42 0.86 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -30.41 350.33 -11.97 -42.38 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.61 Total: -3.47 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.62 Total: -9.75 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.42 Total: -47.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -2.93 Total: -4.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.41 -11.97 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.999 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds