Wall clock time and date at job start Tue Mar 31 2020 14:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48497 * 109.46892 * 270.00517 * 3 2 1 5 5 H 1.48499 * 109.46916 * 30.00232 * 3 2 1 6 6 H 1.48495 * 109.47035 * 150.00244 * 3 2 1 7 7 C 1.37871 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00128 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.46949 * 111.00086 * 170.00332 * 10 9 7 12 12 C 1.53052 * 109.36531 * 183.19072 * 11 10 9 13 13 N 1.46960 * 109.36320 * 301.59709 * 12 11 10 14 14 C 1.46906 * 110.99763 * 183.18661 * 13 12 11 15 15 C 1.50707 * 109.46862 * 170.00287 * 14 13 12 16 16 C 1.38216 * 119.99684 * 104.99803 * 15 14 13 17 17 C 1.38337 * 119.99760 * 179.74629 * 16 15 14 18 18 Cl 1.73598 * 120.00239 * 180.23321 * 17 16 15 19 19 C 1.38375 * 119.99780 * 0.25775 * 17 16 15 20 20 C 1.38171 * 120.00153 * 0.02562 * 19 17 16 21 21 C 1.38328 * 119.99747 * 285.25568 * 15 14 13 22 22 Cl 1.73604 * 120.00477 * 0.02562 * 21 15 14 23 23 C 1.46954 * 110.87702 * 59.32383 * 13 12 11 24 24 C 1.46956 * 111.00129 * 293.80625 * 10 9 7 25 25 H 0.97001 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46775 * 60.00506 * 9 7 2 27 27 H 1.08996 * 109.47508 * 300.00487 * 9 7 2 28 28 H 1.09002 * 109.48982 * 63.22848 * 11 10 9 29 29 H 1.09000 * 109.49109 * 303.15863 * 11 10 9 30 30 H 1.09006 * 109.49122 * 181.63693 * 12 11 10 31 31 H 1.08994 * 109.48918 * 61.56892 * 12 11 10 32 32 H 1.08999 * 109.46831 * 50.00677 * 14 13 12 33 33 H 1.08998 * 109.47021 * 289.99896 * 14 13 12 34 34 H 1.08002 * 120.00562 * 0.03213 * 16 15 14 35 35 H 1.08005 * 119.99872 * 179.97438 * 19 17 16 36 36 H 1.08002 * 120.00313 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.49207 * 60.64681 * 23 13 12 38 38 H 1.09000 * 109.48882 * 180.70968 * 23 13 12 39 39 H 1.09003 * 109.48996 * 296.77657 * 24 10 9 40 40 H 1.09004 * 109.49184 * 56.82388 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0022 11 6 5.4505 -2.6248 -0.2410 12 6 5.9069 -4.0839 -0.3138 13 7 5.5609 -4.7659 0.9411 14 6 6.0507 -6.1509 0.9399 15 6 5.8990 -6.7385 2.3194 16 6 4.8913 -7.6491 2.5757 17 6 4.7554 -8.1924 3.8406 18 17 3.4935 -9.3407 4.1611 19 6 5.6249 -7.8202 4.8506 20 6 6.6287 -6.9055 4.5958 21 6 6.7651 -6.3624 3.3303 22 17 8.0262 -5.2131 3.0103 23 6 4.1116 -4.7200 1.1798 24 6 3.6553 -3.2609 1.2527 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8910 28 1 5.9696 -2.1218 0.5749 29 1 5.6802 -2.1245 -1.1818 30 1 6.9862 -4.1204 -0.4619 31 1 5.4083 -4.5797 -1.1466 32 1 7.1021 -6.1642 0.6529 33 1 5.4722 -6.7401 0.2284 34 1 4.2129 -7.9400 1.7873 35 1 5.5186 -8.2441 5.8382 36 1 7.3071 -6.6146 5.3842 37 1 3.5925 -5.2231 0.3639 38 1 3.8820 -5.2202 2.1206 39 1 4.1539 -2.7650 2.0855 40 1 2.5760 -3.2241 1.4010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:18 Heat of formation + Delta-G solvation = 7.650451 kcal Electronic energy + Delta-G solvation = -23287.884299 eV Core-core repulsion = 19767.398975 eV Total energy + Delta-G solvation = -3520.485324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91709 -39.80401 -37.74422 -37.15657 -36.69917 -34.64335 -32.92384 -31.80258 -31.54800 -30.27349 -27.70251 -25.28010 -24.55742 -23.80524 -22.97315 -22.22535 -20.62045 -18.95027 -18.18568 -17.33217 -17.03016 -16.81499 -16.40885 -15.86814 -15.84079 -15.50235 -15.33813 -15.12124 -14.83066 -14.65201 -14.35232 -13.95556 -13.64599 -13.38425 -13.22569 -13.10463 -12.90162 -12.77820 -12.63910 -12.27598 -12.17501 -12.06961 -11.95633 -11.87785 -11.83529 -11.64121 -11.47062 -11.32734 -10.78210 -10.06838 -9.54803 -9.31543 -9.02528 -8.28663 -6.32027 -0.07829 0.10512 1.01514 1.27736 1.34247 1.35772 1.46526 2.33979 2.35757 3.01930 3.04373 3.22750 3.54305 3.68323 3.98884 4.01361 4.16178 4.20391 4.23256 4.33800 4.37210 4.50460 4.54315 4.65548 4.67036 4.80381 4.81439 4.88441 4.94505 4.97925 5.01263 5.09831 5.11153 5.16880 5.22546 5.52607 5.53794 5.92305 6.02484 6.11068 6.36559 6.65558 6.73775 7.31775 8.87877 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003222 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.506131 B = 8688.105339 C = 9769.007897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.038 0.962 9 C 0.173 3.827 10 N -0.543 5.543 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.531 5.531 14 C 0.095 3.905 15 C -0.066 4.066 16 C -0.099 4.099 17 C -0.041 4.041 18 Cl -0.065 7.065 19 C -0.097 4.097 20 C -0.102 4.102 21 C -0.020 4.020 22 Cl -0.055 7.055 23 C 0.075 3.925 24 C 0.074 3.926 25 H 0.267 0.733 26 H -0.017 1.017 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.020 0.980 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.328 -18.332 8.204 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.046 3.954 10 N -0.268 5.268 11 C -0.075 4.075 12 C -0.057 4.057 13 N -0.256 5.256 14 C -0.032 4.032 15 C -0.068 4.068 16 C -0.118 4.118 17 C -0.068 4.068 18 Cl -0.036 7.036 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.047 4.047 22 Cl -0.026 7.026 23 C -0.054 4.054 24 C -0.055 4.055 25 H 0.076 0.924 26 H 0.001 0.999 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.190 -18.213 8.177 27.009 hybrid contribution -0.512 0.953 -0.017 1.082 sum 17.679 -17.260 8.160 26.020 Atomic orbital electron populations 1.70044 1.08079 1.28101 1.52580 1.25820 0.95580 1.03052 0.94332 0.85724 0.79234 0.78724 0.79316 1.18793 1.20706 1.17837 1.21243 0.91029 0.93244 1.49906 0.94414 1.19899 0.94269 0.86423 0.94802 1.62033 1.13288 1.16915 1.34536 1.22227 0.87365 0.97277 1.00653 1.22095 1.01186 0.92689 0.89719 1.62147 1.13321 1.14940 1.35208 1.21046 1.02312 0.87960 0.91869 1.19623 0.94512 0.96626 0.95990 1.21059 0.97832 0.96619 0.96295 1.21072 0.93738 0.96484 0.95530 1.98389 1.51011 1.58500 1.95702 1.21259 0.93363 0.97210 0.99731 1.21272 0.98946 0.96309 0.95550 1.21008 0.93578 0.94968 0.95182 1.98386 1.49890 1.58486 1.95789 1.22002 0.87688 0.95061 1.00610 1.21884 0.99573 0.94125 0.89912 0.92418 0.99918 0.95236 0.95347 0.90067 0.88010 0.94124 0.88002 0.92559 0.83760 0.82038 0.82138 0.94635 0.90279 0.96177 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.44 0.30 -59.39 16 2 C 0.01 0.56 5.47 84.65 0.46 1.02 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.52 -30.27 9.03 25.60 0.23 -30.04 16 8 H 0.04 2.46 7.38 -2.91 -0.02 2.44 16 9 C 0.17 8.48 3.79 85.56 0.32 8.81 16 10 N -0.54 -22.79 4.70 -900.28 -4.23 -27.02 16 11 C 0.05 1.73 5.61 86.31 0.48 2.21 16 12 C 0.07 1.80 5.61 86.31 0.48 2.29 16 13 N -0.53 -13.56 4.58 -900.24 -4.13 -17.69 16 14 C 0.10 1.87 4.42 85.56 0.38 2.25 16 15 C -0.07 -1.29 4.43 -19.85 -0.09 -1.37 16 16 C -0.10 -1.83 8.81 22.29 0.20 -1.63 16 17 C -0.04 -0.73 6.32 22.33 0.14 -0.59 16 18 Cl -0.06 -1.13 28.96 -2.72 -0.08 -1.21 16 19 C -0.10 -1.44 9.83 22.29 0.22 -1.22 16 20 C -0.10 -1.58 9.83 22.29 0.22 -1.36 16 21 C -0.02 -0.38 6.31 22.33 0.14 -0.24 16 22 Cl -0.05 -1.08 27.54 -2.72 -0.07 -1.16 16 23 C 0.07 2.28 5.42 86.31 0.47 2.75 16 24 C 0.07 2.93 5.43 86.31 0.47 3.40 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H -0.02 -0.84 7.18 -2.38 -0.02 -0.86 16 27 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 30 H 0.10 2.04 8.07 -2.38 -0.02 2.02 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.77 7.48 -2.39 -0.02 1.75 16 33 H 0.06 1.03 7.93 -2.39 -0.02 1.02 16 34 H 0.14 2.47 8.00 -2.91 -0.02 2.45 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.08 2.27 6.71 -2.39 -0.02 2.25 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 2.58 6.79 -2.38 -0.02 2.56 16 Total: -1.00 -66.93 350.33 -1.22 -68.14 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.98 Total: 5.59 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.13 Total: -13.72 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -8.06 Total: -104.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.15 Total: -2.36 kcal Total: -66.93 -1.22 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.795 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds