Wall clock time and date at job start Tue Mar 31 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48510 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 299.99541 * 3 2 1 6 6 H 1.48492 * 109.47392 * 60.00283 * 3 2 1 7 7 C 1.37880 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38265 * 119.98138 * 269.72316 * 15 14 13 17 17 C 1.38204 * 120.03535 * 179.73084 * 16 15 14 18 18 C 1.38344 * 120.00259 * 0.54291 * 17 16 15 19 19 Cl 1.73600 * 120.02078 * 179.75017 * 18 17 16 20 20 C 1.38442 * 119.96014 * 359.73508 * 18 17 16 21 21 Cl 1.73601 * 120.02169 * 180.02562 * 20 18 17 22 22 C 1.38205 * 119.97655 * 90.00008 * 15 14 13 23 23 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 24 24 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 25 25 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 27 27 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 28 28 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 29 29 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 30 30 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 31 31 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 32 32 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 33 33 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 34 34 H 1.07999 * 119.97560 * 359.97438 * 16 15 14 35 35 H 1.08005 * 119.99762 * 180.25793 * 17 16 15 36 36 H 1.07995 * 120.00392 * 0.02562 * 22 15 14 37 37 H 1.09000 * 109.48724 * 60.65076 * 23 13 12 38 38 H 1.09001 * 109.48623 * 180.70590 * 23 13 12 39 39 H 1.08996 * 109.48806 * 296.77717 * 24 10 9 40 40 H 1.08994 * 109.49073 * 56.82039 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5211 -4.8939 0.2408 12 6 2.5567 -6.0186 0.3122 13 7 3.3188 -6.0597 -0.9437 14 6 4.2734 -7.1763 -0.9439 15 6 4.8563 -7.3384 -2.3241 16 6 4.2425 -8.1731 -3.2397 17 6 4.7731 -8.3184 -4.5076 18 6 5.9251 -7.6371 -4.8576 19 17 6.5955 -7.8243 -6.4480 20 6 6.5429 -6.8058 -3.9390 21 17 7.9883 -5.9497 -4.3768 22 6 6.0074 -6.6571 -2.6720 23 6 4.0032 -4.7815 -1.1830 24 6 2.9678 -3.6568 -1.2543 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 0.8249 -5.0918 -0.5743 29 1 0.9742 -4.8428 1.1823 30 1 2.0489 -6.9716 0.4607 31 1 3.2364 -5.8348 1.1442 32 1 3.7595 -8.0935 -0.6564 33 1 5.0738 -6.9701 -0.2333 34 1 3.3459 -8.7088 -2.9651 35 1 4.2908 -8.9673 -5.2236 36 1 6.4890 -6.0091 -1.9548 37 1 4.6995 -4.5837 -0.3680 38 1 4.5502 -4.8326 -2.1245 39 1 2.2880 -3.8406 -2.0863 40 1 3.4752 -2.7037 -1.4031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:59 Heat of formation + Delta-G solvation = 21.370188 kcal Electronic energy + Delta-G solvation = -22976.568516 eV Core-core repulsion = 19456.678124 eV Total energy + Delta-G solvation = -3519.890392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.07312 -38.57069 -36.86149 -36.75812 -35.18322 -32.68960 -31.52621 -31.19331 -30.39754 -28.23779 -26.03880 -23.97723 -23.48730 -22.88849 -21.63696 -21.20593 -19.21409 -17.53888 -16.37010 -16.27127 -16.10768 -15.86610 -14.74341 -14.56528 -14.54959 -14.28265 -14.19732 -14.10775 -13.67243 -13.30531 -13.21870 -12.42075 -12.16912 -12.12706 -12.02766 -11.78453 -11.68912 -11.50898 -11.24755 -11.18228 -11.08408 -10.87693 -10.77063 -10.64096 -10.40857 -10.29584 -9.74997 -9.23124 -9.17325 -8.89807 -8.44863 -8.23331 -7.24915 -6.03368 -4.04742 0.66570 0.81272 1.58785 1.95744 3.11224 3.30673 3.38140 3.42741 4.09602 4.32124 4.42007 4.43803 4.77071 4.85232 4.92421 4.96786 5.17303 5.26495 5.32507 5.42138 5.46288 5.51729 5.61300 5.71820 5.74971 5.80230 5.86062 6.02613 6.11985 6.17810 6.30640 6.39659 6.56085 6.67410 7.10578 7.11572 7.32414 7.35721 7.79410 8.07809 8.19091 8.54046 9.03060 9.59681 11.07573 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002867 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.946151 B = 9762.730078 C =10891.690195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.091 3.909 15 C -0.053 4.053 16 C -0.083 4.083 17 C -0.100 4.100 18 C -0.034 4.034 19 Cl -0.055 7.055 20 C -0.030 4.030 21 Cl -0.052 7.052 22 C -0.093 4.093 23 C 0.054 3.946 24 C 0.069 3.931 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.789 -20.043 -7.382 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.037 4.037 15 C -0.054 4.054 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.062 4.062 19 Cl -0.026 7.026 20 C -0.057 4.057 21 Cl -0.023 7.023 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.060 4.060 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.816 -19.843 -7.543 24.295 hybrid contribution 0.508 1.078 -0.247 1.217 sum 12.324 -18.764 -7.790 23.763 Atomic orbital electron populations 1.69966 1.06063 1.26666 1.51098 1.24992 0.94858 0.99320 0.95453 0.86461 0.80089 0.83475 0.77516 1.19656 1.21094 1.21018 1.21187 0.93475 0.89946 1.49927 0.91885 1.19701 0.90029 0.87295 0.96109 1.62293 1.28202 1.02762 1.33158 1.22062 0.94701 0.89963 1.00547 1.22181 0.96094 0.98754 0.89559 1.62214 1.25262 1.03112 1.35289 1.21054 0.94955 0.96084 0.91612 1.19861 0.93533 0.95254 0.96777 1.21108 0.99301 0.97781 0.91946 1.21040 0.93954 0.99446 0.97419 1.20770 0.97060 1.00889 0.87468 1.98386 1.84903 1.96547 1.22786 1.20729 0.91897 0.98314 0.94799 1.98395 1.35337 1.75543 1.92976 1.21013 0.96142 0.99689 0.94356 1.22353 0.96340 0.88482 1.00226 1.21965 0.95411 0.97358 0.91274 0.92977 0.99071 0.95226 0.95105 0.90921 0.91038 0.94105 0.89510 0.93506 0.84255 0.84068 0.84121 0.94214 0.91023 0.95343 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.16 8.47 -34.44 -0.29 -14.45 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.03 4.72 -4.97 -0.02 5.01 16 10 N -0.54 -11.50 4.70 -235.92 -1.11 -12.61 16 11 C 0.06 0.99 5.61 -3.76 -0.02 0.97 16 12 C 0.06 0.86 5.61 -3.76 -0.02 0.83 16 13 N -0.53 -7.17 4.70 -235.91 -1.11 -8.28 16 14 C 0.09 0.92 5.12 -4.97 -0.03 0.89 16 15 C -0.05 -0.53 4.89 -104.62 -0.51 -1.04 16 16 C -0.08 -0.73 9.70 -39.58 -0.38 -1.12 16 17 C -0.10 -0.89 9.83 -39.55 -0.39 -1.27 16 18 C -0.03 -0.35 6.32 -39.47 -0.25 -0.60 16 19 Cl -0.06 -0.55 27.96 -51.86 -1.45 -2.00 16 20 C -0.03 -0.32 6.32 -39.46 -0.25 -0.57 16 21 Cl -0.05 -0.56 27.96 -51.86 -1.45 -2.01 16 22 C -0.09 -0.96 7.70 -39.55 -0.30 -1.26 16 23 C 0.05 0.82 5.25 -3.77 -0.02 0.80 16 24 C 0.07 1.34 5.43 -3.77 -0.02 1.31 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 27 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.73 7.97 -51.93 -0.41 0.31 16 33 H 0.05 0.46 8.06 -51.93 -0.42 0.04 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.14 1.37 7.99 -52.49 -0.42 0.95 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.02 5.95 -51.93 -0.31 0.71 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -29.94 353.08 -12.33 -42.26 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.64 Total: -4.28 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.61 Total: -9.05 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -1.48 Total: -46.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.90 Total: -4.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.94 -12.33 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.634 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds