Wall clock time and date at job start Tue Mar 31 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48510 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 299.99541 * 3 2 1 6 6 H 1.48492 * 109.47392 * 60.00283 * 3 2 1 7 7 C 1.37880 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38265 * 119.98138 * 269.72316 * 15 14 13 17 17 C 1.38204 * 120.03535 * 179.73084 * 16 15 14 18 18 C 1.38344 * 120.00259 * 0.54291 * 17 16 15 19 19 Cl 1.73600 * 120.02078 * 179.75017 * 18 17 16 20 20 C 1.38442 * 119.96014 * 359.73508 * 18 17 16 21 21 Cl 1.73601 * 120.02169 * 180.02562 * 20 18 17 22 22 C 1.38205 * 119.97655 * 90.00008 * 15 14 13 23 23 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 24 24 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 25 25 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 27 27 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 28 28 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 29 29 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 30 30 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 31 31 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 32 32 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 33 33 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 34 34 H 1.07999 * 119.97560 * 359.97438 * 16 15 14 35 35 H 1.08005 * 119.99762 * 180.25793 * 17 16 15 36 36 H 1.07995 * 120.00392 * 0.02562 * 22 15 14 37 37 H 1.09000 * 109.48724 * 60.65076 * 23 13 12 38 38 H 1.09001 * 109.48623 * 180.70590 * 23 13 12 39 39 H 1.08996 * 109.48806 * 296.77717 * 24 10 9 40 40 H 1.08994 * 109.49073 * 56.82039 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5211 -4.8939 0.2408 12 6 2.5567 -6.0186 0.3122 13 7 3.3188 -6.0597 -0.9437 14 6 4.2734 -7.1763 -0.9439 15 6 4.8563 -7.3384 -2.3241 16 6 4.2425 -8.1731 -3.2397 17 6 4.7731 -8.3184 -4.5076 18 6 5.9251 -7.6371 -4.8576 19 17 6.5955 -7.8243 -6.4480 20 6 6.5429 -6.8058 -3.9390 21 17 7.9883 -5.9497 -4.3768 22 6 6.0074 -6.6571 -2.6720 23 6 4.0032 -4.7815 -1.1830 24 6 2.9678 -3.6568 -1.2543 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 0.8249 -5.0918 -0.5743 29 1 0.9742 -4.8428 1.1823 30 1 2.0489 -6.9716 0.4607 31 1 3.2364 -5.8348 1.1442 32 1 3.7595 -8.0935 -0.6564 33 1 5.0738 -6.9701 -0.2333 34 1 3.3459 -8.7088 -2.9651 35 1 4.2908 -8.9673 -5.2236 36 1 6.4890 -6.0091 -1.9548 37 1 4.6995 -4.5837 -0.3680 38 1 4.5502 -4.8326 -2.1245 39 1 2.2880 -3.8406 -2.0863 40 1 3.4752 -2.7037 -1.4031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:58 Heat of formation + Delta-G solvation = 3.291289 kcal Electronic energy + Delta-G solvation = -22977.352476 eV Core-core repulsion = 19456.678124 eV Total energy + Delta-G solvation = -3520.674351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91681 -39.78565 -37.71469 -37.53908 -36.56312 -34.63428 -32.59502 -32.00360 -31.67052 -29.81313 -27.52525 -25.37018 -24.59616 -23.83699 -23.27705 -22.19183 -20.61076 -18.49820 -18.28652 -17.33640 -17.06832 -16.73426 -16.45730 -15.83665 -15.74566 -15.57340 -15.23182 -15.15717 -14.82881 -14.74160 -14.35481 -13.96097 -13.48865 -13.25790 -13.02867 -12.91102 -12.80635 -12.70699 -12.63234 -12.34756 -12.30079 -12.21862 -12.11510 -12.00620 -11.89988 -11.79165 -11.45111 -11.16335 -10.63155 -9.96317 -9.67361 -9.30215 -9.02094 -8.21620 -6.31744 -0.08509 0.09293 0.81917 1.20327 1.40352 1.40611 1.54272 2.35412 2.39467 3.09114 3.11051 3.31275 3.60797 3.67042 4.00304 4.04863 4.16642 4.22389 4.24668 4.32501 4.41392 4.49491 4.58406 4.69231 4.70089 4.82869 4.88056 4.91605 4.99015 5.04388 5.05794 5.07590 5.22583 5.28816 5.43014 5.61532 5.63518 5.99624 6.05991 6.08529 6.34210 6.63590 6.84535 7.38153 8.89824 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002867 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.946151 B = 9762.730078 C =10891.690195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.545 5.545 11 C 0.052 3.948 12 C 0.072 3.928 13 N -0.541 5.541 14 C 0.094 3.906 15 C -0.061 4.061 16 C -0.078 4.078 17 C -0.099 4.099 18 C -0.045 4.045 19 Cl -0.057 7.057 20 C -0.044 4.044 21 Cl -0.060 7.060 22 C -0.100 4.100 23 C 0.070 3.930 24 C 0.071 3.929 25 H 0.265 0.735 26 H -0.042 1.042 27 H 0.005 0.995 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.012 0.988 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -21.543 -7.231 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.270 5.270 11 C -0.076 4.076 12 C -0.055 4.055 13 N -0.266 5.266 14 C -0.032 4.032 15 C -0.062 4.062 16 C -0.097 4.097 17 C -0.117 4.117 18 C -0.072 4.072 19 Cl -0.028 7.028 20 C -0.072 4.072 21 Cl -0.031 7.031 22 C -0.119 4.119 23 C -0.059 4.059 24 C -0.058 4.058 25 H 0.073 0.927 26 H -0.024 1.024 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.030 0.970 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.820 -21.375 -7.393 25.998 hybrid contribution 0.158 1.468 -0.322 1.512 sum 12.978 -19.906 -7.715 24.984 Atomic orbital electron populations 1.70090 1.07730 1.27851 1.51839 1.25917 0.95745 1.03204 0.94804 0.85345 0.78993 0.78601 0.77755 1.18704 1.20465 1.20266 1.21478 0.93556 0.91087 1.49932 0.91981 1.19340 0.90071 0.89042 0.93268 1.62226 1.27333 1.03257 1.34138 1.22199 0.95896 0.89511 1.00040 1.22111 0.95231 0.98444 0.89757 1.62160 1.26243 1.03024 1.35156 1.21131 0.94695 0.95500 0.91898 1.19929 0.93521 0.95681 0.97054 1.21397 0.99618 0.97153 0.91504 1.21326 0.93304 0.99133 0.97971 1.20973 0.97655 1.01207 0.87410 1.98384 1.85026 1.96546 1.22879 1.20857 0.92042 0.98932 0.95322 1.98388 1.35837 1.75779 1.93050 1.21106 0.96558 0.99954 0.94270 1.22107 0.94692 0.88094 1.00960 1.21926 0.95696 0.98353 0.89811 0.92667 1.02439 0.97688 0.96114 0.90957 0.87415 0.93949 0.86795 0.92745 0.82002 0.81999 0.83947 0.94190 0.89819 0.97005 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -29.96 8.47 25.60 0.22 -29.74 16 8 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 9 C 0.21 11.36 4.72 85.55 0.40 11.76 16 10 N -0.54 -23.73 4.70 -900.31 -4.23 -27.96 16 11 C 0.05 1.82 5.61 86.31 0.48 2.30 16 12 C 0.07 1.80 5.61 86.31 0.48 2.28 16 13 N -0.54 -13.10 4.70 -900.27 -4.23 -17.33 16 14 C 0.09 1.56 5.12 85.56 0.44 2.00 16 15 C -0.06 -1.04 4.89 -19.86 -0.10 -1.13 16 16 C -0.08 -1.13 9.70 22.27 0.22 -0.92 16 17 C -0.10 -1.50 9.83 22.29 0.22 -1.28 16 18 C -0.04 -0.85 6.32 22.34 0.14 -0.71 16 19 Cl -0.06 -1.07 27.96 -2.72 -0.08 -1.15 16 20 C -0.04 -0.90 6.32 22.35 0.14 -0.76 16 21 Cl -0.06 -1.25 27.96 -2.72 -0.08 -1.32 16 22 C -0.10 -1.89 7.70 22.29 0.17 -1.71 16 23 C 0.07 2.03 5.25 86.31 0.45 2.49 16 24 C 0.07 2.80 5.43 86.31 0.47 3.27 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 27 H 0.01 0.29 8.03 -2.39 -0.02 0.27 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 30 H 0.11 1.98 8.07 -2.39 -0.02 1.96 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.32 7.97 -2.39 -0.02 1.31 16 33 H 0.05 0.86 8.06 -2.39 -0.02 0.84 16 34 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.14 2.57 7.99 -2.91 -0.02 2.54 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 2.26 5.95 -2.39 -0.01 2.24 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 2.75 6.79 -2.39 -0.02 2.74 16 Total: -1.00 -66.33 353.08 -1.07 -67.39 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.04 Total: 1.82 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.20 Total: -11.61 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -8.18 Total: -101.79 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.15 Total: -2.47 kcal Total: -66.33 -1.07 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.686 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds