Wall clock time and date at job start Tue Mar 31 2020 15:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41599 * 113.99989 * 2 1 4 4 C 1.46497 * 120.00313 * 275.45890 * 3 2 1 5 5 C 1.34777 * 119.99452 * 95.46121 * 3 2 1 6 6 O 1.21553 * 119.99938 * 186.57415 * 5 3 2 7 7 C 1.47842 * 120.00424 * 6.56996 * 5 3 2 8 8 C 1.39599 * 120.14998 * 188.72629 * 7 5 3 9 9 C 1.37929 * 119.85435 * 180.29976 * 8 7 5 10 10 C 1.38380 * 120.14751 * 359.45328 * 9 8 7 11 11 C 1.50699 * 119.85418 * 180.25850 * 10 9 8 12 12 C 1.38335 * 120.28976 * 0.55093 * 10 9 8 13 13 S 1.76199 * 119.92614 * 179.70421 * 12 10 9 14 14 O 1.42101 * 106.40230 * 177.02765 * 13 12 10 15 15 O 1.42100 * 106.40340 * 309.94708 * 13 12 10 16 16 N 1.65600 * 107.22059 * 63.49080 * 13 12 10 17 17 C 1.36937 * 120.00275 * 63.73653 * 16 13 12 18 18 H 1.08004 * 119.99576 * 5.10364 * 17 16 13 19 19 C 1.38809 * 119.99951 * 185.10191 * 17 16 13 20 20 N 1.31613 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47313 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47066 * 209.99477 * 21 19 17 24 24 H 1.48500 * 109.47168 * 329.99825 * 21 19 17 25 25 C 1.37982 * 120.14642 * 359.72710 * 12 10 9 26 26 H 1.08994 * 109.47851 * 59.99769 * 1 2 3 27 27 H 1.09009 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47105 * 299.99245 * 1 2 3 29 29 H 1.08999 * 109.47345 * 269.99818 * 4 3 2 30 30 H 1.09000 * 109.46882 * 30.00167 * 4 3 2 31 31 H 1.08996 * 109.47066 * 149.99643 * 4 3 2 32 32 H 1.08005 * 120.06951 * 0.03178 * 8 7 5 33 33 H 1.08012 * 119.92336 * 179.72544 * 9 8 7 34 34 H 1.09002 * 109.46769 * 272.93087 * 11 10 9 35 35 H 1.08998 * 109.47391 * 32.93366 * 11 10 9 36 36 H 1.08999 * 109.46889 * 152.93372 * 11 10 9 37 37 H 0.97003 * 119.99436 * 243.74906 * 16 13 12 38 38 H 0.97001 * 120.00319 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07549 * 180.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1926 2.0119 -1.2629 5 6 2.3804 1.8639 1.1620 6 8 2.7631 3.0175 1.1770 7 6 2.3269 1.0865 2.4184 8 6 2.5384 1.7199 3.6443 9 6 2.4932 0.9875 4.8123 10 6 2.2276 -0.3699 4.7716 11 6 2.1740 -1.1625 6.0522 12 6 2.0171 -1.0037 3.5601 13 16 1.6875 -2.7341 3.5189 14 8 1.4507 -3.0651 2.1574 15 8 2.6959 -3.3536 4.3053 16 7 0.2565 -2.9796 4.3154 17 6 -0.9027 -2.4431 3.8219 18 1 -0.8985 -1.9302 2.8714 19 6 -2.0830 -2.5583 4.5432 20 7 -2.0882 -3.1838 5.7013 21 14 -3.6644 -1.8270 3.8696 22 1 -4.3640 -2.8400 3.0392 23 1 -4.5412 -1.4202 4.9970 24 1 -3.3453 -0.6394 3.0371 25 6 2.0653 -0.2839 2.3839 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.1737 1.7740 -1.6739 30 1 1.4197 1.7112 -1.9702 31 1 2.1240 3.0849 -1.0842 32 1 2.7413 2.7801 3.6778 33 1 2.6611 1.4756 5.7611 34 1 3.1765 -1.5042 6.3101 35 1 1.7874 -0.5328 6.8534 36 1 1.5195 -2.0239 5.9191 37 1 0.2395 -3.5034 5.1317 38 1 -2.9129 -3.2640 6.2055 39 1 1.9003 -0.7798 1.4388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726884219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:44 Heat of formation + Delta-G solvation = -56.781905 kcal Electronic energy + Delta-G solvation = -27222.791211 eV Core-core repulsion = 23260.846432 eV Total energy + Delta-G solvation = -3961.944779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.25220 -38.41257 -37.47170 -36.16322 -34.80132 -34.74858 -33.09126 -32.66926 -31.05576 -30.89021 -28.28501 -26.92529 -25.66695 -24.61219 -22.82747 -22.02207 -20.62269 -18.81522 -18.30191 -17.91372 -17.00050 -16.50317 -16.25809 -15.91214 -15.60129 -15.04978 -14.73992 -14.61546 -14.34137 -14.16558 -13.97761 -13.57098 -13.46968 -13.29337 -13.08257 -12.66492 -12.17941 -11.96434 -11.93460 -11.73759 -11.69557 -11.38328 -11.34115 -11.15108 -11.05405 -10.90179 -10.67887 -10.65750 -10.39765 -10.02973 -9.83034 -9.72054 -9.18193 -8.96117 -8.50348 -8.37175 -6.58681 -4.01024 0.93418 1.36167 1.57691 1.77752 2.73767 3.09926 3.14774 3.15603 3.81231 3.91437 4.00142 4.40762 4.69728 4.87012 4.98819 5.02905 5.11220 5.18220 5.23906 5.28223 5.31952 5.36344 5.50099 5.54356 5.66002 5.74865 5.85546 5.97104 6.01429 6.12534 6.24793 6.40726 6.45301 6.49079 6.67368 6.95036 7.10303 7.30319 7.37806 7.95690 8.55370 8.68419 9.12544 10.56800 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.005740 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.611040 B = 4876.538194 C = 5704.019317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 O -0.132 6.132 3 N -0.485 5.485 4 C 0.085 3.915 5 C 0.580 3.420 6 O -0.530 6.530 7 C -0.184 4.184 8 C -0.018 4.018 9 C -0.162 4.162 10 C 0.053 3.947 11 C -0.144 4.144 12 C -0.675 4.675 13 S 2.609 3.391 14 O -0.972 6.972 15 O -1.000 7.000 16 N -0.948 5.948 17 C -0.270 4.270 18 H 0.103 0.897 19 C 0.034 3.966 20 N -0.872 5.872 21 Si 0.920 3.080 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.008 3.992 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.276 0.724 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 8.041 -5.911 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.135 6.135 3 N -0.264 5.264 4 C -0.055 4.055 5 C 0.373 3.627 6 O -0.409 6.409 7 C -0.188 4.188 8 C -0.037 4.037 9 C -0.181 4.181 10 C 0.052 3.948 11 C -0.200 4.200 12 C -0.755 4.755 13 S 2.700 3.300 14 O -0.962 6.962 15 O -0.988 6.988 16 N -0.700 5.700 17 C -0.411 4.411 18 H 0.120 0.880 19 C -0.174 4.174 20 N -0.514 5.514 21 Si 0.746 3.254 22 H -0.200 1.200 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.011 4.011 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.086 0.914 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.282 7.955 -6.381 11.060 hybrid contribution -1.345 1.011 0.295 1.708 sum 2.937 8.966 -6.085 11.227 Atomic orbital electron populations 1.23541 0.80703 1.05404 1.01531 1.90574 1.21091 1.06117 1.95731 1.49866 1.58895 1.10484 1.07161 1.21902 1.02331 0.97222 0.84080 1.18429 0.76257 0.85412 0.82602 1.90770 1.48605 1.16280 1.85196 1.19762 1.11490 0.94775 0.92759 1.21307 0.91567 0.99861 0.90991 1.21052 1.04888 0.93917 0.98204 1.19778 0.87356 0.93717 0.93997 1.21267 1.03984 1.00641 0.94133 1.31975 1.14856 1.31126 0.97559 1.06764 0.73353 0.75157 0.74717 1.93445 1.85599 1.82574 1.34621 1.93436 1.59094 1.76043 1.70271 1.51757 1.18274 1.58180 1.41778 1.19281 0.84885 1.34225 1.02740 0.87974 1.25262 0.99736 0.97155 0.95295 1.69674 1.29129 1.39777 1.12782 0.86032 0.81325 0.79430 0.78615 1.19968 1.20623 1.19346 1.22331 0.86831 0.92668 0.99292 0.92663 0.86008 0.92255 0.91564 0.90451 0.89368 0.84900 0.85101 0.89164 0.90392 0.90035 0.75167 0.91437 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 10.97 101.05 1.11 0.92 16 2 O -0.13 -2.00 7.56 -11.47 -0.09 -2.09 16 3 N -0.48 -7.05 3.36 -68.05 -0.23 -7.28 16 4 C 0.08 0.89 10.84 59.85 0.65 1.54 16 5 C 0.58 9.70 7.70 -12.33 -0.09 9.61 16 6 O -0.53 -9.45 15.93 5.32 0.08 -9.36 16 7 C -0.18 -3.23 5.86 -104.97 -0.62 -3.85 16 8 C -0.02 -0.29 9.59 -39.19 -0.38 -0.67 16 9 C -0.16 -2.54 9.69 -39.64 -0.38 -2.93 16 10 C 0.05 0.95 5.88 -104.53 -0.61 0.34 16 11 C -0.14 -2.40 8.84 36.01 0.32 -2.09 16 12 C -0.68 -13.42 5.79 -39.64 -0.23 -13.64 16 13 S 2.61 56.93 4.88 -107.50 -0.52 56.40 16 14 O -0.97 -22.75 16.69 -57.17 -0.95 -23.71 16 15 O -1.00 -22.98 16.53 -57.17 -0.94 -23.92 16 16 N -0.95 -21.58 4.52 31.50 0.14 -21.43 16 17 C -0.27 -6.40 9.63 -15.06 -0.15 -6.55 16 18 H 0.10 2.30 7.82 -52.48 -0.41 1.89 16 19 C 0.03 0.81 5.50 -17.43 -0.10 0.71 16 20 N -0.87 -21.66 13.06 55.49 0.72 -20.94 16 21 Si 0.92 18.51 29.55 -169.99 -5.02 13.49 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 C 0.01 0.15 8.34 -39.18 -0.33 -0.18 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.12 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.91 7.34 -51.93 -0.38 0.53 16 32 H 0.13 1.88 7.68 -52.48 -0.40 1.48 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.08 1.52 4.83 -51.93 -0.25 1.27 16 37 H 0.41 9.44 7.60 -34.47 -0.26 9.18 16 38 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 39 H 0.17 3.27 3.75 -54.49 -0.20 3.06 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -30.32 344.39 -6.85 -37.17 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.43 Total: 13.25 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.81 Total: -16.78 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.64 Total: -49.65 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -1.90 Total: -59.07 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 56.93 SS G_CDS: -0.52 Total: 56.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.32 -6.85 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726884219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.609 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds