Wall clock time and date at job start Tue Mar 31 2020 15:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41599 * 113.99989 * 2 1 4 4 C 1.46497 * 120.00313 * 275.45890 * 3 2 1 5 5 C 1.34777 * 119.99452 * 95.46121 * 3 2 1 6 6 O 1.21553 * 119.99938 * 186.57415 * 5 3 2 7 7 C 1.47842 * 120.00424 * 6.56996 * 5 3 2 8 8 C 1.39599 * 120.14998 * 188.72629 * 7 5 3 9 9 C 1.37929 * 119.85435 * 180.29976 * 8 7 5 10 10 C 1.38380 * 120.14751 * 359.45328 * 9 8 7 11 11 C 1.50699 * 119.85418 * 180.25850 * 10 9 8 12 12 C 1.38335 * 120.28976 * 0.55093 * 10 9 8 13 13 S 1.76199 * 119.92614 * 179.70421 * 12 10 9 14 14 O 1.42101 * 106.40230 * 177.02765 * 13 12 10 15 15 O 1.42100 * 106.40340 * 309.94708 * 13 12 10 16 16 N 1.65600 * 107.22059 * 63.49080 * 13 12 10 17 17 C 1.36937 * 120.00275 * 63.73653 * 16 13 12 18 18 H 1.08004 * 119.99576 * 5.10364 * 17 16 13 19 19 C 1.38809 * 119.99951 * 185.10191 * 17 16 13 20 20 N 1.31613 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47313 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47066 * 209.99477 * 21 19 17 24 24 H 1.48500 * 109.47168 * 329.99825 * 21 19 17 25 25 C 1.37982 * 120.14642 * 359.72710 * 12 10 9 26 26 H 1.08994 * 109.47851 * 59.99769 * 1 2 3 27 27 H 1.09009 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47105 * 299.99245 * 1 2 3 29 29 H 1.08999 * 109.47345 * 269.99818 * 4 3 2 30 30 H 1.09000 * 109.46882 * 30.00167 * 4 3 2 31 31 H 1.08996 * 109.47066 * 149.99643 * 4 3 2 32 32 H 1.08005 * 120.06951 * 0.03178 * 8 7 5 33 33 H 1.08012 * 119.92336 * 179.72544 * 9 8 7 34 34 H 1.09002 * 109.46769 * 272.93087 * 11 10 9 35 35 H 1.08998 * 109.47391 * 32.93366 * 11 10 9 36 36 H 1.08999 * 109.46889 * 152.93372 * 11 10 9 37 37 H 0.97003 * 119.99436 * 243.74906 * 16 13 12 38 38 H 0.97001 * 120.00319 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07549 * 180.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1926 2.0119 -1.2629 5 6 2.3804 1.8639 1.1620 6 8 2.7631 3.0175 1.1770 7 6 2.3269 1.0865 2.4184 8 6 2.5384 1.7199 3.6443 9 6 2.4932 0.9875 4.8123 10 6 2.2276 -0.3699 4.7716 11 6 2.1740 -1.1625 6.0522 12 6 2.0171 -1.0037 3.5601 13 16 1.6875 -2.7341 3.5189 14 8 1.4507 -3.0651 2.1574 15 8 2.6959 -3.3536 4.3053 16 7 0.2565 -2.9796 4.3154 17 6 -0.9027 -2.4431 3.8219 18 1 -0.8985 -1.9302 2.8714 19 6 -2.0830 -2.5583 4.5432 20 7 -2.0882 -3.1838 5.7013 21 14 -3.6644 -1.8270 3.8696 22 1 -4.3640 -2.8400 3.0392 23 1 -4.5412 -1.4202 4.9970 24 1 -3.3453 -0.6394 3.0371 25 6 2.0653 -0.2839 2.3839 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.1737 1.7740 -1.6739 30 1 1.4197 1.7112 -1.9702 31 1 2.1240 3.0849 -1.0842 32 1 2.7413 2.7801 3.6778 33 1 2.6611 1.4756 5.7611 34 1 3.1765 -1.5042 6.3101 35 1 1.7874 -0.5328 6.8534 36 1 1.5195 -2.0239 5.9191 37 1 0.2395 -3.5034 5.1317 38 1 -2.9129 -3.2640 6.2055 39 1 1.9003 -0.7798 1.4388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726884219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:43 Heat of formation + Delta-G solvation = -77.833540 kcal Electronic energy + Delta-G solvation = -27223.704078 eV Core-core repulsion = 23260.846432 eV Total energy + Delta-G solvation = -3962.857646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.51450 -39.73583 -38.65212 -38.04241 -36.65255 -36.53137 -34.17759 -34.04185 -32.80153 -32.29185 -29.44777 -28.02523 -26.79577 -26.38240 -24.26433 -23.32075 -21.88808 -20.32059 -20.05915 -19.45780 -18.34347 -18.13189 -17.38627 -17.35024 -16.94527 -16.61860 -16.27777 -16.07846 -15.71141 -15.48220 -15.33636 -15.16386 -14.79630 -14.50994 -14.06590 -13.83030 -13.53832 -13.39491 -13.23262 -13.07283 -13.04336 -12.95581 -12.93777 -12.89541 -12.74018 -12.60989 -12.35584 -12.07893 -11.91178 -11.75499 -11.35649 -10.96849 -10.42987 -10.26789 -10.13563 -9.82945 -8.31550 -5.85731 -0.44271 -0.24214 0.03033 0.67540 1.44243 1.49331 1.51364 1.58793 2.27555 2.49034 2.68155 2.73346 2.95822 3.24150 3.56145 3.73379 3.81181 3.99915 4.04975 4.27412 4.29477 4.30992 4.35114 4.45608 4.50100 4.64008 4.71363 4.73180 4.78509 4.84682 4.97118 5.08827 5.15331 5.16524 5.20871 5.30907 5.62938 5.75199 6.13242 6.73463 6.76537 6.95571 7.34598 8.85902 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.005740 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.611040 B = 4876.538194 C = 5704.019317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 O -0.150 6.150 3 N -0.481 5.481 4 C 0.078 3.922 5 C 0.577 3.423 6 O -0.545 6.545 7 C -0.193 4.193 8 C -0.011 4.011 9 C -0.151 4.151 10 C 0.042 3.958 11 C -0.149 4.149 12 C -0.695 4.695 13 S 2.654 3.346 14 O -0.993 6.993 15 O -1.009 7.009 16 N -0.965 5.965 17 C -0.301 4.301 18 H 0.105 0.895 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.973 3.027 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.257 1.257 25 C -0.001 4.001 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.408 0.592 38 H 0.273 0.727 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 10.330 -6.650 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 O -0.152 6.152 3 N -0.260 5.260 4 C -0.060 4.060 5 C 0.369 3.631 6 O -0.425 6.425 7 C -0.197 4.197 8 C -0.030 4.030 9 C -0.169 4.169 10 C 0.040 3.960 11 C -0.206 4.206 12 C -0.780 4.780 13 S 2.747 3.253 14 O -0.983 6.983 15 O -0.999 6.999 16 N -0.718 5.718 17 C -0.437 4.437 18 H 0.123 0.877 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.797 3.203 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.021 4.021 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.082 0.918 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.883 10.189 -7.146 13.369 hybrid contribution -1.255 0.388 0.404 1.374 sum 3.628 10.577 -6.742 13.057 Atomic orbital electron populations 1.23663 0.79632 1.05725 1.02541 1.90529 1.22273 1.06651 1.95796 1.49973 1.57979 1.10189 1.07873 1.22203 1.04011 0.96965 0.82860 1.18315 0.76571 0.85240 0.83017 1.90759 1.49578 1.16594 1.85575 1.19996 1.11250 0.94237 0.94209 1.21692 0.89778 1.01059 0.90468 1.21444 1.02919 0.92666 0.99909 1.20065 0.87276 0.95146 0.93512 1.21367 1.04311 1.00296 0.94597 1.31329 1.18432 1.28832 0.99379 1.03911 0.72514 0.75266 0.73571 1.93431 1.85850 1.83388 1.35629 1.93439 1.59048 1.76706 1.70710 1.51356 1.18641 1.60675 1.41130 1.19413 0.85725 1.34869 1.03716 0.87739 1.25907 1.02020 0.97614 0.95611 1.69768 1.29492 1.42471 1.14151 0.85219 0.78064 0.79031 0.77987 1.19954 1.20804 1.18131 1.22357 0.87347 0.93571 0.98786 0.89482 0.86080 0.93400 0.90443 0.87803 0.89048 0.82504 0.81069 0.87971 0.87538 0.92401 0.75595 0.91752 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.46 10.97 113.37 1.24 0.78 16 2 O -0.15 -4.32 7.56 -38.78 -0.29 -4.62 16 3 N -0.48 -13.06 3.36 -487.49 -1.64 -14.70 16 4 C 0.08 1.44 10.84 127.77 1.38 2.82 16 5 C 0.58 18.16 7.70 86.79 0.67 18.83 16 6 O -0.55 -18.19 15.93 -3.88 -0.06 -18.25 16 7 C -0.19 -6.42 5.86 -20.09 -0.12 -6.53 16 8 C -0.01 -0.32 9.59 22.53 0.22 -0.11 16 9 C -0.15 -4.22 9.69 22.23 0.22 -4.00 16 10 C 0.04 1.42 5.88 -19.81 -0.12 1.30 16 11 C -0.15 -4.76 8.84 71.24 0.63 -4.13 16 12 C -0.69 -27.07 5.79 22.23 0.13 -26.94 16 13 S 2.65 116.71 4.88 -56.49 -0.28 116.43 16 14 O -0.99 -46.93 16.69 -128.00 -2.14 -49.06 16 15 O -1.01 -46.43 16.53 -128.00 -2.12 -48.55 16 16 N -0.96 -45.17 4.52 -54.27 -0.25 -45.41 16 17 C -0.30 -14.62 9.63 84.03 0.81 -13.81 16 18 H 0.10 4.83 7.82 -2.91 -0.02 4.81 16 19 C -0.01 -0.41 5.50 84.86 0.47 0.06 16 20 N -0.92 -47.18 13.06 21.65 0.28 -46.89 16 21 Si 0.97 38.43 29.55 68.60 2.03 40.46 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 C 0.00 -0.05 8.34 22.53 0.19 0.13 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 28 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.66 7.34 -2.39 -0.02 1.64 16 32 H 0.16 3.82 7.68 -2.91 -0.02 3.79 16 33 H 0.17 3.37 8.06 -2.90 -0.02 3.35 16 34 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 35 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 36 H 0.06 2.15 4.83 -2.39 -0.01 2.14 16 37 H 0.41 19.54 7.60 -96.75 -0.74 18.80 16 38 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 39 H 0.17 6.36 3.75 -34.57 -0.13 6.23 16 Total: -1.00 -65.59 344.39 1.51 -64.08 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: 0.25 Total: 38.10 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 5.72 Total: -31.59 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -1.60 Total: -107.00 kcal Atomic # 8 Polarization: -115.87 SS G_CDS: -4.61 Total: -120.48 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: 116.71 SS G_CDS: -0.28 Total: 116.43 kcal Total: -65.59 1.51 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726884219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.754 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds