Wall clock time and date at job start Tue Mar 31 2020 14:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48493 * 109.47131 * 240.00177 * 3 2 1 5 5 H 1.48501 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47346 * 120.00031 * 3 2 1 7 7 C 1.38652 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00304 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.35761 * 117.00278 * 185.05713 * 9 7 2 11 11 C 1.39062 * 119.98275 * 354.40750 * 10 9 7 12 12 C 1.38253 * 120.28649 * 180.02562 * 11 10 9 13 13 C 1.37959 * 120.25216 * 359.97438 * 12 11 10 14 14 C 1.39916 * 119.95702 * 359.97438 * 13 12 11 15 15 C 1.47132 * 120.13882 * 179.97438 * 14 13 12 16 16 C 1.35023 * 120.00038 * 137.01243 * 15 14 13 17 17 C 1.46280 * 119.99886 * 348.73579 * 16 15 14 18 18 O 1.21755 * 120.00191 * 353.48196 * 17 16 15 19 19 C 1.47683 * 119.99836 * 173.47531 * 17 16 15 20 20 C 1.39767 * 120.08123 * 180.02562 * 19 17 16 21 21 C 1.37708 * 119.95126 * 179.97438 * 20 19 17 22 22 C 1.38959 * 120.11733 * 0.27498 * 21 20 19 23 23 O 1.35763 * 119.91907 * 179.72495 * 22 21 20 24 24 C 1.39204 * 120.16114 * 359.44697 * 22 21 20 25 25 F 1.35097 * 119.97422 * 180.27315 * 24 22 21 26 26 C 1.37874 * 120.04723 * 0.55264 * 24 22 21 27 27 C 1.38512 * 119.98460 * 174.65918 * 10 9 7 28 28 H 0.96994 * 120.00618 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.85474 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.87118 * 179.97438 * 12 11 10 31 31 H 1.08001 * 120.01804 * 179.97438 * 13 12 11 32 32 H 1.08000 * 119.99944 * 317.01518 * 15 14 13 33 33 H 1.07997 * 119.99649 * 168.74094 * 16 15 14 34 34 H 1.08009 * 120.02349 * 359.95982 * 20 19 17 35 35 H 1.08002 * 119.94782 * 179.97438 * 21 20 19 36 36 H 0.96694 * 113.99929 * 90.00293 * 23 22 21 37 37 H 1.07999 * 120.05959 * 179.74355 * 26 24 22 38 38 H 1.07998 * 120.12550 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5047 0.1056 11 6 3.4591 -3.4375 0.0907 12 6 4.2141 -4.5907 0.1977 13 6 3.5954 -5.8176 0.3208 14 6 2.1986 -5.8971 0.3380 15 6 1.5346 -7.2036 0.4685 16 6 0.4721 -7.3418 1.2901 17 6 0.1313 -6.2748 2.2309 18 8 0.8709 -5.3160 2.3579 19 6 -1.1100 -6.3603 3.0264 20 6 -1.4375 -5.3415 3.9254 21 6 -2.5959 -5.4238 4.6655 22 6 -3.4371 -6.5208 4.5243 23 8 -4.5753 -6.6005 5.2601 24 6 -3.1184 -7.5355 3.6262 25 9 -3.9417 -8.5977 3.4880 26 6 -1.9603 -7.4600 2.8818 27 6 1.4367 -4.7308 0.2233 28 1 -0.4851 0.8399 0.0004 29 1 3.9501 -2.4802 -0.0050 30 1 5.2924 -4.5308 0.1850 31 1 4.1889 -6.7161 0.4038 32 1 1.8972 -8.0520 -0.0929 33 1 -0.1261 -8.2402 1.2527 34 1 -0.7825 -4.4904 4.0397 35 1 -2.8488 -4.6367 5.3604 36 1 -5.3471 -6.2025 4.8348 37 1 -1.7108 -8.2492 2.1879 38 1 0.3581 -4.7851 0.2305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730149066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:20 Heat of formation + Delta-G solvation = -62.299627 kcal Electronic energy + Delta-G solvation = -26261.596587 eV Core-core repulsion = 22144.048628 eV Total energy + Delta-G solvation = -4117.547958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.09016 -40.25635 -39.28009 -38.49596 -36.86991 -36.28216 -33.40061 -32.22339 -31.28159 -30.33605 -29.33118 -28.58784 -25.40169 -24.83334 -23.47478 -22.50092 -21.39289 -21.03628 -19.10407 -18.94686 -17.81124 -17.37389 -17.05212 -16.45948 -16.28550 -15.91325 -15.20401 -15.13886 -14.66450 -14.65425 -14.34932 -14.19601 -14.05668 -13.92600 -13.48855 -13.31448 -13.09384 -12.55803 -12.51107 -12.39614 -12.18365 -11.94206 -11.67485 -11.37122 -10.96552 -10.90301 -10.83055 -10.65833 -10.45609 -9.60820 -9.53903 -9.29545 -9.24114 -8.84851 -8.78311 -7.61199 -7.18310 -6.40239 -3.98704 0.25007 0.92113 1.11783 2.38799 2.41986 2.90314 3.14889 3.16661 3.18715 3.59071 3.70581 3.97927 3.99944 4.12985 4.44095 4.61925 4.85539 4.91897 4.99504 5.14902 5.19206 5.35330 5.40795 5.58028 5.60013 5.67853 5.75862 5.84791 5.92400 6.04686 6.08391 6.27530 6.33637 6.39684 6.43694 6.70614 6.92200 7.07931 7.21915 7.23296 7.36434 7.44972 7.78631 7.82639 8.04156 9.05415 9.76921 10.78035 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.003435 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.772052 B = 8149.121067 C =10101.173020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.147 3.853 11 C -0.216 4.216 12 C -0.087 4.087 13 C -0.182 4.182 14 C -0.054 4.054 15 C 0.008 3.992 16 C -0.254 4.254 17 C 0.403 3.597 18 O -0.405 6.405 19 C -0.128 4.128 20 C -0.055 4.055 21 C -0.126 4.126 22 C 0.095 3.905 23 O -0.489 6.489 24 C 0.059 3.941 25 F -0.133 7.133 26 C -0.099 4.099 27 C -0.119 4.119 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.395 0.605 37 H 0.149 0.851 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -14.349 5.452 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.084 6.084 10 C 0.094 3.906 11 C -0.236 4.236 12 C -0.105 4.105 13 C -0.201 4.201 14 C -0.055 4.055 15 C -0.011 4.011 16 C -0.272 4.272 17 C 0.281 3.719 18 O -0.280 6.280 19 C -0.129 4.129 20 C -0.073 4.073 21 C -0.145 4.145 22 C 0.049 3.951 23 O -0.300 6.300 24 C 0.039 3.961 25 F -0.112 7.112 26 C -0.118 4.118 27 C -0.138 4.138 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.252 0.748 37 H 0.166 0.834 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.627 -13.934 5.904 15.562 hybrid contribution -0.155 0.723 -0.275 0.789 sum -3.783 -13.211 5.629 14.850 Atomic orbital electron populations 1.70026 1.05906 1.27579 1.46506 1.25242 0.95810 0.98683 0.96715 0.85818 0.78717 0.79963 0.79143 1.19558 1.20321 1.19553 1.21248 0.91689 0.80924 1.52743 0.89283 1.83984 1.34068 1.11266 1.79115 1.19132 0.90170 0.87998 0.93285 1.21299 0.93819 0.98985 1.09475 1.20600 0.98412 0.92284 0.99240 1.20625 0.92772 0.97098 1.09628 1.18422 0.93223 0.91415 1.02391 1.22642 0.90893 0.95617 0.91905 1.23245 1.01230 1.01435 1.01306 1.20266 0.84037 0.85586 0.81979 1.90913 1.47680 1.30155 1.59214 1.20549 0.97467 0.95181 0.99693 1.21456 0.95547 0.98093 0.92244 1.21355 0.95046 0.97323 1.00764 1.18698 0.90167 0.93668 0.92568 1.84794 1.17936 1.82309 1.44934 1.17944 0.91701 0.87003 0.99442 1.91502 1.71010 1.53752 1.94911 1.21333 0.92286 0.99120 0.99044 1.20054 0.98424 0.89487 1.05863 0.92114 0.85612 0.87384 0.87527 0.85030 0.84971 0.83302 0.83716 0.74752 0.83375 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 8 H 0.09 2.34 5.19 -52.48 -0.27 2.06 16 9 O -0.18 -5.25 9.75 0.01 0.00 -5.25 16 10 C 0.15 3.65 6.64 -39.17 -0.26 3.39 16 11 C -0.22 -4.82 9.17 -39.27 -0.36 -5.18 16 12 C -0.09 -1.63 10.02 -39.68 -0.40 -2.03 16 13 C -0.18 -3.17 9.79 -39.06 -0.38 -3.55 16 14 C -0.05 -0.98 4.55 -105.08 -0.48 -1.46 16 15 C 0.01 0.11 9.81 -37.12 -0.36 -0.26 16 16 C -0.25 -3.19 9.37 -37.49 -0.35 -3.54 16 17 C 0.40 6.22 6.10 -32.50 -0.20 6.02 16 18 O -0.41 -7.98 12.13 5.14 0.06 -7.92 16 19 C -0.13 -1.70 5.88 -104.90 -0.62 -2.32 16 20 C -0.06 -0.73 9.59 -39.20 -0.38 -1.10 16 21 C -0.13 -1.41 9.97 -39.51 -0.39 -1.81 16 22 C 0.09 1.06 6.72 -38.96 -0.26 0.80 16 23 O -0.49 -4.79 13.35 -19.00 -0.25 -5.04 16 24 C 0.06 0.68 7.30 -39.36 -0.29 0.39 16 25 F -0.13 -1.58 17.10 2.25 0.04 -1.54 16 26 C -0.10 -1.10 9.42 -39.14 -0.37 -1.47 16 27 C -0.12 -2.59 6.54 -38.90 -0.25 -2.85 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.78 5.62 -52.48 -0.29 2.49 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.16 6.35 -52.49 -0.33 0.82 16 34 H 0.15 2.09 7.64 -52.48 -0.40 1.69 16 35 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.40 1.99 9.06 45.56 0.41 2.41 16 37 H 0.15 1.28 6.23 -52.49 -0.33 0.95 16 38 H 0.11 2.39 6.99 -52.49 -0.37 2.03 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -34.38 340.36 -6.85 -41.23 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.41 Total: 7.19 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -5.15 Total: -24.72 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.76 Total: -24.78 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.19 Total: -18.20 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.38 -6.85 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730149066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.066 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds