Wall clock time and date at job start Tue Mar 31 2020 14:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48493 * 109.47131 * 240.00177 * 3 2 1 5 5 H 1.48501 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47346 * 120.00031 * 3 2 1 7 7 C 1.38652 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00304 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.35761 * 117.00278 * 185.05713 * 9 7 2 11 11 C 1.39062 * 119.98275 * 354.40750 * 10 9 7 12 12 C 1.38253 * 120.28649 * 180.02562 * 11 10 9 13 13 C 1.37959 * 120.25216 * 359.97438 * 12 11 10 14 14 C 1.39916 * 119.95702 * 359.97438 * 13 12 11 15 15 C 1.47132 * 120.13882 * 179.97438 * 14 13 12 16 16 C 1.35023 * 120.00038 * 137.01243 * 15 14 13 17 17 C 1.46280 * 119.99886 * 348.73579 * 16 15 14 18 18 O 1.21755 * 120.00191 * 353.48196 * 17 16 15 19 19 C 1.47683 * 119.99836 * 173.47531 * 17 16 15 20 20 C 1.39767 * 120.08123 * 180.02562 * 19 17 16 21 21 C 1.37708 * 119.95126 * 179.97438 * 20 19 17 22 22 C 1.38959 * 120.11733 * 0.27498 * 21 20 19 23 23 O 1.35763 * 119.91907 * 179.72495 * 22 21 20 24 24 C 1.39204 * 120.16114 * 359.44697 * 22 21 20 25 25 F 1.35097 * 119.97422 * 180.27315 * 24 22 21 26 26 C 1.37874 * 120.04723 * 0.55264 * 24 22 21 27 27 C 1.38512 * 119.98460 * 174.65918 * 10 9 7 28 28 H 0.96994 * 120.00618 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.85474 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.87118 * 179.97438 * 12 11 10 31 31 H 1.08001 * 120.01804 * 179.97438 * 13 12 11 32 32 H 1.08000 * 119.99944 * 317.01518 * 15 14 13 33 33 H 1.07997 * 119.99649 * 168.74094 * 16 15 14 34 34 H 1.08009 * 120.02349 * 359.95982 * 20 19 17 35 35 H 1.08002 * 119.94782 * 179.97438 * 21 20 19 36 36 H 0.96694 * 113.99929 * 90.00293 * 23 22 21 37 37 H 1.07999 * 120.05959 * 179.74355 * 26 24 22 38 38 H 1.07998 * 120.12550 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5047 0.1056 11 6 3.4591 -3.4375 0.0907 12 6 4.2141 -4.5907 0.1977 13 6 3.5954 -5.8176 0.3208 14 6 2.1986 -5.8971 0.3380 15 6 1.5346 -7.2036 0.4685 16 6 0.4721 -7.3418 1.2901 17 6 0.1313 -6.2748 2.2309 18 8 0.8709 -5.3160 2.3579 19 6 -1.1100 -6.3603 3.0264 20 6 -1.4375 -5.3415 3.9254 21 6 -2.5959 -5.4238 4.6655 22 6 -3.4371 -6.5208 4.5243 23 8 -4.5753 -6.6005 5.2601 24 6 -3.1184 -7.5355 3.6262 25 9 -3.9417 -8.5977 3.4880 26 6 -1.9603 -7.4600 2.8818 27 6 1.4367 -4.7308 0.2233 28 1 -0.4851 0.8399 0.0004 29 1 3.9501 -2.4802 -0.0050 30 1 5.2924 -4.5308 0.1850 31 1 4.1889 -6.7161 0.4038 32 1 1.8972 -8.0520 -0.0929 33 1 -0.1261 -8.2402 1.2527 34 1 -0.7825 -4.4904 4.0397 35 1 -2.8488 -4.6367 5.3604 36 1 -5.3471 -6.2025 4.8348 37 1 -1.7108 -8.2492 2.1879 38 1 0.3581 -4.7851 0.2305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730149066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:19 Heat of formation + Delta-G solvation = -85.313488 kcal Electronic energy + Delta-G solvation = -26262.594543 eV Core-core repulsion = 22144.048628 eV Total energy + Delta-G solvation = -4118.545914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.00257 -41.41644 -40.63297 -39.86451 -38.19734 -37.56428 -34.71146 -34.20140 -32.31660 -31.38875 -30.87850 -30.01752 -27.34168 -26.06559 -24.49660 -23.72143 -22.96096 -22.35784 -20.47409 -19.80265 -19.27328 -18.98986 -18.30966 -17.53607 -17.23372 -17.00616 -16.80554 -16.29580 -16.21192 -15.99057 -15.73594 -15.58249 -15.30861 -15.23215 -14.90545 -14.54287 -14.39837 -14.08558 -13.72623 -13.57479 -13.51407 -13.32486 -13.02898 -12.93181 -12.58381 -12.37273 -12.27645 -12.15506 -11.78755 -11.22794 -10.89763 -10.79767 -10.65213 -10.15803 -9.80173 -9.07954 -8.92414 -8.45384 -6.13284 -0.80495 -0.03858 -0.00148 0.80907 0.97398 1.32823 1.44224 1.49292 1.86724 2.18199 2.59725 2.75277 2.87066 3.03157 3.19170 3.21271 3.50255 3.56369 3.90371 3.93291 4.03262 4.12182 4.27656 4.33526 4.47434 4.50778 4.58136 4.67840 4.72934 4.83941 4.92207 4.96856 5.08490 5.12711 5.20002 5.32478 5.43461 5.53002 5.68907 5.75605 5.75996 6.04256 6.23694 6.58507 6.65688 6.99043 7.82691 8.78209 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.003435 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.772052 B = 8149.121067 C =10101.173020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.098 0.902 9 O -0.237 6.237 10 C 0.103 3.897 11 C -0.236 4.236 12 C -0.086 4.086 13 C -0.165 4.165 14 C -0.047 4.047 15 C -0.002 4.002 16 C -0.238 4.238 17 C 0.396 3.604 18 O -0.464 6.464 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.127 4.127 22 C 0.107 3.893 23 O -0.495 6.495 24 C 0.051 3.949 25 F -0.132 7.132 26 C -0.081 4.081 27 C -0.131 4.131 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.186 0.814 33 H 0.183 0.817 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.418 0.582 37 H 0.181 0.819 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -17.819 5.540 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.115 0.885 9 O -0.145 6.145 10 C 0.053 3.947 11 C -0.255 4.255 12 C -0.104 4.104 13 C -0.183 4.183 14 C -0.047 4.047 15 C -0.020 4.020 16 C -0.256 4.256 17 C 0.277 3.723 18 O -0.342 6.342 19 C -0.150 4.150 20 C -0.090 4.090 21 C -0.145 4.145 22 C 0.060 3.940 23 O -0.309 6.309 24 C 0.032 3.968 25 F -0.111 7.111 26 C -0.100 4.100 27 C -0.151 4.151 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.203 0.797 33 H 0.200 0.800 34 H 0.143 0.857 35 H 0.179 0.821 36 H 0.279 0.721 37 H 0.198 0.802 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.601 -17.471 5.987 18.650 hybrid contribution -0.523 1.428 -0.177 1.531 sum -3.125 -16.043 5.810 17.346 Atomic orbital electron populations 1.70183 1.07987 1.28666 1.49287 1.26562 0.96862 1.02616 0.96004 0.84677 0.77432 0.74383 0.79876 1.18000 1.19442 1.18436 1.21757 0.92388 0.81642 1.53146 0.88466 1.83937 1.35816 1.12494 1.82242 1.19722 0.91616 0.87892 0.95457 1.21408 0.93085 1.00274 1.10730 1.21057 1.00199 0.91477 0.97664 1.21279 0.92820 0.98331 1.05891 1.18959 0.93900 0.92388 0.99431 1.22990 0.90940 0.94610 0.93428 1.23656 1.00725 1.01699 0.99484 1.21017 0.83932 0.85332 0.81969 1.90907 1.49653 1.32433 1.61239 1.20475 0.97761 0.96411 1.00402 1.21422 0.96260 0.97888 0.93455 1.21445 0.94278 0.98070 1.00755 1.18732 0.90415 0.93096 0.91729 1.84736 1.18343 1.82586 1.45233 1.18015 0.91950 0.87122 0.99747 1.91509 1.70964 1.53664 1.94927 1.21501 0.91171 0.98609 0.98673 1.20159 0.97972 0.90173 1.06750 0.91969 0.86672 0.83583 0.82489 0.79682 0.79987 0.85693 0.82136 0.72137 0.80205 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.37 13.67 21.61 0.30 -58.08 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.41 -25.22 9.49 67.92 0.64 -24.58 16 8 H 0.10 5.47 5.19 -2.91 -0.02 5.46 16 9 O -0.24 -15.12 9.75 -22.87 -0.22 -15.34 16 10 C 0.10 5.45 6.64 22.53 0.15 5.60 16 11 C -0.24 -10.91 9.17 22.47 0.21 -10.70 16 12 C -0.09 -3.07 10.02 22.21 0.22 -2.84 16 13 C -0.17 -5.17 9.79 22.61 0.22 -4.95 16 14 C -0.05 -1.60 4.55 -20.16 -0.09 -1.69 16 15 C 0.00 -0.04 9.81 23.87 0.23 0.19 16 16 C -0.24 -5.14 9.37 23.62 0.22 -4.92 16 17 C 0.40 12.14 6.10 26.86 0.16 12.30 16 18 O -0.46 -19.24 12.13 -4.52 -0.05 -19.29 16 19 C -0.15 -3.95 5.88 -20.04 -0.12 -4.06 16 20 C -0.07 -1.99 9.59 22.51 0.22 -1.78 16 21 C -0.13 -2.84 9.97 22.32 0.22 -2.62 16 22 C 0.11 2.22 6.72 22.67 0.15 2.37 16 23 O -0.49 -8.65 13.35 -90.89 -1.21 -9.87 16 24 C 0.05 1.07 7.30 22.42 0.16 1.24 16 25 F -0.13 -2.76 17.10 44.97 0.77 -1.99 16 26 C -0.08 -1.61 9.42 22.55 0.21 -1.40 16 27 C -0.13 -5.99 6.54 22.71 0.15 -5.84 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.12 5.41 5.62 -2.91 -0.02 5.39 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.18 2.07 6.35 -2.91 -0.02 2.06 16 34 H 0.13 4.00 7.64 -2.91 -0.02 3.98 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.42 3.28 9.06 -74.06 -0.67 2.61 16 37 H 0.18 2.27 6.23 -2.91 -0.02 2.25 16 38 H 0.09 4.31 6.99 -2.91 -0.02 4.29 16 Total: -1.00 -84.93 340.36 5.51 -79.42 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.47 Total: 23.38 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 3.43 Total: -44.60 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.30 Total: -58.08 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.49 Total: -44.50 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.77 Total: -1.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -84.93 5.51 -79.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730149066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.889 kcal (2) G-P(sol) polarization free energy of solvation -84.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds