Wall clock time and date at job start Tue Mar 31 2020 15:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32763 * 124.70036 * 2 1 4 4 C 1.44415 * 113.09069 * 180.19483 * 3 2 1 5 5 C 1.47296 * 123.47072 * 179.76639 * 4 3 2 6 6 O 1.21802 * 120.00470 * 179.70976 * 5 4 3 7 7 C 1.46415 * 120.00049 * 359.71123 * 5 4 3 8 8 C 1.34913 * 120.00371 * 173.36098 * 7 5 4 9 9 C 1.47177 * 119.99763 * 348.92050 * 8 7 5 10 10 C 1.39921 * 120.14159 * 131.96593 * 9 8 7 11 11 C 1.37921 * 119.96408 * 179.97438 * 10 9 8 12 12 C 1.38297 * 120.24767 * 0.02562 * 11 10 9 13 13 C 1.39007 * 120.28098 * 359.97438 * 12 11 10 14 14 O 1.35761 * 119.98400 * 180.02562 * 13 12 11 15 15 C 1.34834 * 116.99898 * 5.60053 * 14 13 12 16 16 H 1.08004 * 119.99781 * 354.91418 * 15 14 13 17 17 C 1.38657 * 120.00054 * 174.91694 * 15 14 13 18 18 N 1.31550 * 119.99882 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47409 * 89.99853 * 19 17 15 21 21 H 1.48501 * 109.47087 * 209.99653 * 19 17 15 22 22 H 1.48499 * 109.47226 * 329.99187 * 19 17 15 23 23 C 1.38568 * 120.03309 * 359.76788 * 13 12 11 24 24 C 1.36109 * 113.05799 * 359.50366 * 4 3 2 25 25 C 1.50707 * 124.59809 * 180.26644 * 24 4 3 26 26 S 1.70453 * 110.80693 * 0.26472 * 24 4 3 27 27 H 1.09004 * 109.46891 * 180.30172 * 1 2 3 28 28 H 1.09001 * 109.47279 * 300.29435 * 1 2 3 29 29 H 1.08997 * 109.47530 * 60.30140 * 1 2 3 30 30 H 1.07997 * 123.45717 * 0.02562 * 3 2 1 31 31 H 1.08008 * 119.99734 * 353.35272 * 7 5 4 32 32 H 1.08003 * 120.00332 * 169.19598 * 8 7 5 33 33 H 1.07997 * 120.02021 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.87850 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.85939 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00398 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.12394 * 180.25009 * 23 13 12 38 38 H 1.08992 * 109.46914 * 89.99851 * 25 24 4 39 39 H 1.08996 * 109.47143 * 209.99791 * 25 24 4 40 40 H 1.08997 * 109.46658 * 329.99663 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.0915 0.0000 4 6 3.6775 0.8009 -0.0045 5 6 4.7204 1.8410 -0.0104 6 8 5.8965 1.5242 -0.0087 7 6 4.3435 3.2557 -0.0184 8 6 5.2911 4.2072 0.1113 9 6 6.6599 3.8338 0.5026 10 6 7.7554 4.3318 -0.2114 11 6 9.0365 3.9800 0.1588 12 6 9.2438 3.1354 1.2341 13 6 8.1630 2.6347 1.9507 14 8 8.3735 1.8065 3.0056 15 6 9.6533 1.6019 3.3774 16 1 10.4590 2.0213 2.7930 17 6 9.9351 0.8532 4.5099 18 7 8.9537 0.3428 5.2219 19 14 11.7081 0.5705 5.0254 20 1 12.1370 1.6583 5.9408 21 1 11.8185 -0.7358 5.7230 22 1 12.5784 0.5641 3.8222 23 6 6.8711 2.9848 1.5921 24 6 3.9476 -0.5331 0.0030 25 6 5.3334 -1.1255 0.0064 26 16 2.5062 -1.4428 0.0081 27 1 -0.3633 -1.0277 0.0054 28 1 -0.3634 0.5184 0.8873 29 1 -0.3634 0.5091 -0.8926 30 1 1.8610 2.0939 0.0004 31 1 3.3066 3.5377 -0.1282 32 1 5.0443 5.2432 -0.0677 33 1 7.5978 4.9913 -1.0520 34 1 9.8810 4.3655 -0.3931 35 1 10.2497 2.8637 1.5183 36 1 9.1507 -0.1807 6.0144 37 1 6.0306 2.5999 2.1503 38 1 5.6674 -1.2625 1.0347 39 1 5.3176 -2.0896 -0.5020 40 1 6.0172 -0.4529 -0.5113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730150552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:29 Heat of formation + Delta-G solvation = -5.419090 kcal Electronic energy + Delta-G solvation = -24553.041095 eV Core-core repulsion = 21004.172838 eV Total energy + Delta-G solvation = -3548.868257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.17219 -40.36106 -38.48449 -37.78308 -34.75226 -34.23536 -33.87421 -31.31124 -30.71415 -29.90486 -27.42921 -26.87862 -25.43828 -23.87896 -22.94194 -22.15835 -20.92210 -19.84879 -19.11713 -18.55963 -17.69811 -17.24707 -16.78413 -16.29164 -16.20923 -15.78303 -15.71605 -15.44318 -14.91599 -14.82226 -14.55403 -14.43404 -14.21537 -14.14887 -14.14043 -13.83402 -13.56821 -13.55068 -13.05421 -12.86108 -12.65771 -12.52284 -12.48148 -12.35373 -12.26833 -12.14083 -11.80891 -11.24697 -10.86544 -10.66838 -10.53357 -9.54479 -9.40103 -9.12954 -8.92303 -8.46947 -6.15244 -0.54711 0.06869 0.51162 0.79005 0.82117 0.93940 1.31323 1.34755 1.43430 1.49520 2.16696 2.50732 2.85403 3.20093 3.32412 3.49243 3.69472 3.89622 3.99929 4.11252 4.20443 4.31276 4.35188 4.48330 4.50467 4.53216 4.60296 4.65782 4.71672 4.83479 4.88009 4.97909 5.07425 5.10474 5.14399 5.18996 5.19416 5.32072 5.45546 5.49711 5.68315 5.74761 5.75792 6.03134 6.23464 6.79380 6.97377 7.81520 8.76973 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003622 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.339016 B = 7728.757945 C = 9317.473724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.201 4.201 3 C -0.109 4.109 4 C -0.205 4.205 5 C 0.409 3.591 6 O -0.469 6.469 7 C -0.224 4.224 8 C -0.015 4.015 9 C -0.033 4.033 10 C -0.170 4.170 11 C -0.081 4.081 12 C -0.239 4.239 13 C 0.109 3.891 14 O -0.238 6.238 15 C -0.413 4.413 16 H 0.098 0.902 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.141 4.141 24 C -0.176 4.176 25 C -0.092 4.092 26 S 0.192 5.808 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.271 0.729 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 3.688 -14.150 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.318 4.318 3 C -0.136 4.136 4 C -0.219 4.219 5 C 0.290 3.710 6 O -0.348 6.348 7 C -0.242 4.242 8 C -0.033 4.033 9 C -0.033 4.033 10 C -0.188 4.188 11 C -0.099 4.099 12 C -0.258 4.258 13 C 0.059 3.941 14 O -0.146 6.146 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.221 4.221 18 N -0.562 5.562 19 Si 0.838 3.162 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.161 4.161 24 C -0.295 4.295 25 C -0.150 4.150 26 S 0.459 5.541 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.196 0.804 31 H 0.195 0.805 32 H 0.200 0.800 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.609 1.716 -13.830 21.682 hybrid contribution 1.489 0.790 0.780 1.857 sum -15.121 2.506 -13.050 20.130 Atomic orbital electron populations 1.20457 0.84790 1.03948 1.04485 1.24778 1.01842 0.95113 1.10089 1.21283 0.89150 1.01091 1.02099 1.21010 0.96035 0.93246 1.11659 1.20599 0.87298 0.90589 0.72526 1.90816 1.21578 1.85209 1.37238 1.23681 1.01943 0.91498 1.07086 1.22924 0.89337 1.01304 0.89742 1.18913 0.95052 0.95483 0.93828 1.21220 0.91007 1.04303 1.02289 1.21046 0.98314 0.95700 0.94865 1.21364 0.98254 1.05353 1.00873 1.19698 0.94977 0.90621 0.88791 1.83949 1.30001 1.57420 1.43198 1.21808 0.81296 1.34801 1.10978 0.88429 1.26597 1.05203 0.95597 0.94746 1.70201 1.34390 1.34468 1.17157 0.84591 0.74088 0.78458 0.79069 1.18559 1.19472 1.17791 1.20095 0.92822 1.02216 1.00950 1.24785 1.02311 0.98181 1.04273 1.20479 0.91005 1.01221 1.02327 1.82764 0.92202 1.09048 1.70108 0.90650 0.89296 0.88664 0.80372 0.80463 0.79966 0.82728 0.83577 0.86678 0.91970 0.89687 0.92519 0.89524 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.35 71.24 0.74 -0.10 16 2 C -0.20 -3.80 6.44 24.51 0.16 -3.64 16 3 C -0.11 -2.31 9.69 22.67 0.22 -2.09 16 4 C -0.20 -6.15 5.98 -19.82 -0.12 -6.27 16 5 C 0.41 13.90 6.29 26.79 0.17 14.07 16 6 O -0.47 -20.32 10.20 -4.67 -0.05 -20.37 16 7 C -0.22 -5.55 9.51 23.64 0.22 -5.32 16 8 C -0.02 -0.39 9.78 23.86 0.23 -0.15 16 9 C -0.03 -1.19 4.33 -20.16 -0.09 -1.28 16 10 C -0.17 -5.67 9.79 22.60 0.22 -5.45 16 11 C -0.08 -3.03 10.02 22.21 0.22 -2.81 16 12 C -0.24 -11.44 9.17 22.47 0.21 -11.23 16 13 C 0.11 5.97 6.64 22.53 0.15 6.12 16 14 O -0.24 -15.56 9.75 -22.90 -0.22 -15.79 16 15 C -0.41 -25.68 9.49 67.92 0.64 -25.03 16 16 H 0.10 5.61 5.19 -2.91 -0.02 5.60 16 17 C -0.02 -1.48 5.49 84.84 0.47 -1.01 16 18 N -0.92 -59.52 13.67 21.61 0.30 -59.23 16 19 Si 1.02 45.15 29.55 68.60 2.03 47.18 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.14 -6.78 6.72 22.71 0.15 -6.63 16 24 C -0.18 -5.45 6.35 25.19 0.16 -5.29 16 25 C -0.09 -3.17 9.61 71.24 0.68 -2.49 16 26 S 0.19 4.32 22.94 -56.49 -1.30 3.02 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.18 2.50 6.98 -2.91 -0.02 2.48 16 31 H 0.18 2.64 6.83 -2.91 -0.02 2.62 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.12 5.57 5.62 -2.91 -0.02 5.56 16 36 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.08 4.32 7.47 -2.91 -0.02 4.30 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 3.04 5.94 -2.39 -0.01 3.03 16 Total: -1.00 -84.61 354.29 6.27 -78.33 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 1.08 Total: 25.47 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 4.44 Total: -58.62 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.27 Total: -36.15 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.30 Total: 3.02 kcal Total: -84.61 6.27 -78.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.915 kcal (2) G-P(sol) polarization free energy of solvation -84.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds