Wall clock time and date at job start Tue Mar 31 2020 15:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.32768 * 124.70681 * 2 1 4 4 C 1.44407 * 113.09679 * 179.97438 * 3 2 1 5 5 C 1.47302 * 123.47154 * 180.02562 * 4 3 2 6 6 O 1.21802 * 120.00571 * 180.02562 * 5 4 3 7 7 C 1.46423 * 119.99671 * 359.75082 * 5 4 3 8 8 C 1.34919 * 119.99528 * 180.27462 * 7 5 4 9 9 C 1.47172 * 119.99230 * 179.97438 * 8 7 5 10 10 C 1.39921 * 120.14495 * 0.02562 * 9 8 7 11 11 C 1.37922 * 119.96758 * 180.02562 * 10 9 8 12 12 C 1.38300 * 120.24600 * 359.97438 * 11 10 9 13 13 C 1.39009 * 120.28096 * 359.97438 * 12 11 10 14 14 O 1.35758 * 119.98533 * 180.02562 * 13 12 11 15 15 C 1.34830 * 117.00310 * 174.47861 * 14 13 12 16 16 H 1.08001 * 119.99596 * 5.08462 * 15 14 13 17 17 C 1.38647 * 120.00160 * 185.08062 * 15 14 13 18 18 N 1.31554 * 120.00345 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47344 * 89.99839 * 19 17 15 21 21 H 1.48506 * 109.47307 * 210.00042 * 19 17 15 22 22 H 1.48503 * 109.47185 * 329.99507 * 19 17 15 23 23 C 1.38572 * 120.03301 * 359.76708 * 13 12 11 24 24 C 1.36108 * 113.05993 * 0.26834 * 4 3 2 25 25 C 1.50706 * 124.59792 * 179.70584 * 24 4 3 26 26 S 1.70446 * 110.80496 * 359.59517 * 24 4 3 27 27 H 1.09001 * 109.47233 * 89.99747 * 1 2 3 28 28 H 1.08995 * 109.47349 * 209.99584 * 1 2 3 29 29 H 1.09003 * 109.47412 * 330.00122 * 1 2 3 30 30 H 1.08007 * 123.45120 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99919 * 0.27861 * 7 5 4 32 32 H 1.07999 * 120.00019 * 359.97438 * 8 7 5 33 33 H 1.08003 * 120.01713 * 0.02857 * 10 9 8 34 34 H 1.07999 * 119.88305 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.86201 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00862 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.12171 * 180.25760 * 23 13 12 38 38 H 1.09006 * 109.46629 * 90.00597 * 25 24 4 39 39 H 1.09003 * 109.46938 * 209.99952 * 25 24 4 40 40 H 1.08992 * 109.47416 * 330.00197 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2629 1.0915 0.0000 4 6 3.6774 0.8008 0.0006 5 6 4.7205 1.8409 0.0013 6 8 5.8966 1.5241 0.0013 7 6 4.3434 3.2558 -0.0042 8 6 5.2988 4.2084 -0.0092 9 6 4.9198 5.6305 -0.0152 10 6 3.5697 5.9978 -0.0152 11 6 3.2186 7.3316 -0.0214 12 6 4.1967 8.3094 -0.0271 13 6 5.5411 7.9560 -0.0260 14 8 6.4962 8.9208 -0.0311 15 6 7.7767 8.5152 0.0859 16 1 8.0103 7.4608 0.0952 17 6 8.7934 9.4516 0.1939 18 7 8.5089 10.7359 0.1819 19 14 10.5676 8.8895 0.3552 20 1 11.1699 8.7579 -0.9957 21 1 11.3335 9.8882 1.1435 22 1 10.6098 7.5758 1.0462 23 6 5.9069 6.6195 -0.0144 24 6 3.9476 -0.5331 -0.0048 25 6 5.3333 -1.1255 -0.0120 26 16 2.5062 -1.4428 0.0006 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.8610 2.0940 -0.0004 31 1 3.3006 3.5367 -0.0041 32 1 6.3416 3.9274 -0.0087 33 1 2.8028 5.2373 -0.0103 34 1 2.1761 7.6136 -0.0210 35 1 3.9148 9.3519 -0.0323 36 1 9.2202 11.3911 0.2571 37 1 6.9509 6.3434 -0.0094 38 1 5.6711 -1.2718 1.0141 39 1 5.3156 -2.0850 -0.5289 40 1 6.0153 -0.4484 -0.5260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730150556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:43 Heat of formation + Delta-G solvation = -1.456264 kcal Electronic energy + Delta-G solvation = -23309.525268 eV Core-core repulsion = 19760.828852 eV Total energy + Delta-G solvation = -3548.696416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.81547 -39.08528 -37.30102 -36.71912 -33.67103 -33.17827 -32.25528 -30.28815 -29.45794 -28.61818 -26.22627 -25.34428 -24.57786 -22.66798 -21.76616 -20.79678 -19.62934 -18.51951 -17.78854 -17.19345 -17.05725 -15.91777 -15.28858 -15.21519 -14.96344 -14.45671 -14.22359 -14.08853 -13.93960 -13.75819 -13.70043 -13.44172 -13.29355 -13.18067 -12.94236 -12.46259 -12.32024 -11.97852 -11.84009 -11.81395 -11.71858 -11.64990 -11.17089 -11.04413 -10.85967 -10.68945 -10.46120 -9.83821 -9.64860 -9.44977 -8.88057 -8.85136 -8.66119 -7.92206 -7.34813 -6.50116 -4.10129 0.33927 0.93766 1.21869 1.65156 1.81445 2.20586 2.64074 3.11226 3.12571 3.17137 3.49325 3.93012 4.17399 4.41295 4.51416 4.66678 4.91595 4.99219 5.02501 5.11384 5.14486 5.18185 5.23228 5.34839 5.41038 5.43245 5.54836 5.63625 5.70931 5.77323 5.82351 5.98326 6.03551 6.07501 6.13301 6.32584 6.47985 6.62709 6.71564 6.97979 7.09890 7.22359 7.30983 7.63254 7.66612 7.93253 8.95218 9.62242 10.67480 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002370 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.852619 B =11813.503576 C =13333.452836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C -0.097 4.097 4 C -0.185 4.185 5 C 0.445 3.555 6 O -0.468 6.468 7 C -0.256 4.256 8 C 0.014 3.986 9 C -0.050 4.050 10 C -0.185 4.185 11 C -0.083 4.083 12 C -0.174 4.174 13 C 0.146 3.854 14 O -0.175 6.175 15 C -0.395 4.395 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.861 5.861 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.266 1.266 23 C -0.200 4.200 24 C -0.146 4.146 25 C -0.096 4.096 26 S 0.165 5.835 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.271 0.729 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.882 -21.845 -0.242 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.324 4.324 3 C -0.125 4.125 4 C -0.200 4.200 5 C 0.327 3.673 6 O -0.349 6.349 7 C -0.275 4.275 8 C -0.005 4.005 9 C -0.051 4.051 10 C -0.204 4.204 11 C -0.101 4.101 12 C -0.193 4.193 13 C 0.092 3.908 14 O -0.078 6.078 15 C -0.471 4.471 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.495 5.495 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.220 4.220 24 C -0.265 4.265 25 C -0.155 4.155 26 S 0.431 5.569 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.494 -23.075 -0.239 26.732 hybrid contribution 1.090 1.317 0.088 1.712 sum -12.405 -21.758 -0.151 25.046 Atomic orbital electron populations 1.20330 0.87492 1.03260 1.02864 1.24272 1.00312 0.95930 1.11861 1.21184 0.90910 0.99509 1.00916 1.20685 0.94698 0.93359 1.11227 1.19803 0.87098 0.88538 0.71861 1.90593 1.20508 1.84799 1.38990 1.23214 1.00843 0.92534 1.10902 1.22701 0.99754 0.91653 0.86362 1.18689 0.93484 0.91312 1.01579 1.20825 0.94460 0.95822 1.09252 1.20597 0.98052 0.92371 0.99119 1.20424 0.90235 0.99717 1.08925 1.19264 0.89915 0.88308 0.93292 1.83999 1.14955 1.30552 1.78339 1.21319 0.79230 0.93984 1.52564 0.89033 1.25285 0.99947 0.94776 0.96344 1.70029 1.33719 1.00197 1.45582 0.85720 0.80348 0.78689 0.78777 1.19789 1.20179 1.19073 1.21429 0.99647 0.92171 1.08706 1.24661 1.01645 0.97032 1.03168 1.20648 0.90419 1.00818 1.03576 1.82952 0.93817 1.08925 1.71207 0.90710 0.91370 0.90325 0.83108 0.85061 0.85340 0.86967 0.86563 0.86209 0.91920 0.84946 0.90155 0.91528 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.34 36.00 0.37 -0.10 16 2 C -0.21 -1.81 6.44 -36.19 -0.23 -2.05 16 3 C -0.10 -0.98 9.70 -39.03 -0.38 -1.36 16 4 C -0.19 -2.27 5.98 -104.55 -0.63 -2.90 16 5 C 0.45 6.35 7.07 -32.60 -0.23 6.12 16 6 O -0.47 -7.66 13.96 5.10 0.07 -7.59 16 7 C -0.26 -3.55 9.01 -37.47 -0.34 -3.89 16 8 C 0.01 0.22 9.46 -37.13 -0.35 -0.13 16 9 C -0.05 -0.91 5.87 -105.08 -0.62 -1.53 16 10 C -0.18 -3.01 9.41 -39.07 -0.37 -3.38 16 11 C -0.08 -1.39 10.02 -39.67 -0.40 -1.79 16 12 C -0.17 -3.50 9.99 -39.27 -0.39 -3.89 16 13 C 0.15 3.42 6.64 -39.17 -0.26 3.16 16 14 O -0.18 -4.89 9.76 0.03 0.00 -4.89 16 15 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 19 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.20 -4.26 8.91 -38.90 -0.35 -4.60 16 24 C -0.15 -1.62 6.35 -35.07 -0.22 -1.84 16 25 C -0.10 -0.98 9.60 36.01 0.35 -0.63 16 26 S 0.16 1.42 22.94 -107.50 -2.47 -1.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.15 1.28 6.95 -52.48 -0.36 0.91 16 31 H 0.13 1.54 4.80 -52.49 -0.25 1.29 16 32 H 0.13 2.07 7.52 -52.49 -0.39 1.67 16 33 H 0.11 1.47 6.16 -52.48 -0.32 1.15 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 1.23 5.95 -51.93 -0.31 0.92 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -31.18 358.31 -9.41 -40.59 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.31 Total: 4.66 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -3.84 Total: -28.36 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.18 -9.41 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.138 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds