Wall clock time and date at job start Tue Mar 31 2020 15:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.32768 * 124.70681 * 2 1 4 4 C 1.44407 * 113.09679 * 179.97438 * 3 2 1 5 5 C 1.47302 * 123.47154 * 180.02562 * 4 3 2 6 6 O 1.21802 * 120.00571 * 180.02562 * 5 4 3 7 7 C 1.46423 * 119.99671 * 359.75082 * 5 4 3 8 8 C 1.34919 * 119.99528 * 180.27462 * 7 5 4 9 9 C 1.47172 * 119.99230 * 179.97438 * 8 7 5 10 10 C 1.39921 * 120.14495 * 0.02562 * 9 8 7 11 11 C 1.37922 * 119.96758 * 180.02562 * 10 9 8 12 12 C 1.38300 * 120.24600 * 359.97438 * 11 10 9 13 13 C 1.39009 * 120.28096 * 359.97438 * 12 11 10 14 14 O 1.35758 * 119.98533 * 180.02562 * 13 12 11 15 15 C 1.34830 * 117.00310 * 174.47861 * 14 13 12 16 16 H 1.08001 * 119.99596 * 5.08462 * 15 14 13 17 17 C 1.38647 * 120.00160 * 185.08062 * 15 14 13 18 18 N 1.31554 * 120.00345 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47344 * 89.99839 * 19 17 15 21 21 H 1.48506 * 109.47307 * 210.00042 * 19 17 15 22 22 H 1.48503 * 109.47185 * 329.99507 * 19 17 15 23 23 C 1.38572 * 120.03301 * 359.76708 * 13 12 11 24 24 C 1.36108 * 113.05993 * 0.26834 * 4 3 2 25 25 C 1.50706 * 124.59792 * 179.70584 * 24 4 3 26 26 S 1.70446 * 110.80496 * 359.59517 * 24 4 3 27 27 H 1.09001 * 109.47233 * 89.99747 * 1 2 3 28 28 H 1.08995 * 109.47349 * 209.99584 * 1 2 3 29 29 H 1.09003 * 109.47412 * 330.00122 * 1 2 3 30 30 H 1.08007 * 123.45120 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99919 * 0.27861 * 7 5 4 32 32 H 1.07999 * 120.00019 * 359.97438 * 8 7 5 33 33 H 1.08003 * 120.01713 * 0.02857 * 10 9 8 34 34 H 1.07999 * 119.88305 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.86201 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00862 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.12171 * 180.25760 * 23 13 12 38 38 H 1.09006 * 109.46629 * 90.00597 * 25 24 4 39 39 H 1.09003 * 109.46938 * 209.99952 * 25 24 4 40 40 H 1.08992 * 109.47416 * 330.00197 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2629 1.0915 0.0000 4 6 3.6774 0.8008 0.0006 5 6 4.7205 1.8409 0.0013 6 8 5.8966 1.5241 0.0013 7 6 4.3434 3.2558 -0.0042 8 6 5.2988 4.2084 -0.0092 9 6 4.9198 5.6305 -0.0152 10 6 3.5697 5.9978 -0.0152 11 6 3.2186 7.3316 -0.0214 12 6 4.1967 8.3094 -0.0271 13 6 5.5411 7.9560 -0.0260 14 8 6.4962 8.9208 -0.0311 15 6 7.7767 8.5152 0.0859 16 1 8.0103 7.4608 0.0952 17 6 8.7934 9.4516 0.1939 18 7 8.5089 10.7359 0.1819 19 14 10.5676 8.8895 0.3552 20 1 11.1699 8.7579 -0.9957 21 1 11.3335 9.8882 1.1435 22 1 10.6098 7.5758 1.0462 23 6 5.9069 6.6195 -0.0144 24 6 3.9476 -0.5331 -0.0048 25 6 5.3333 -1.1255 -0.0120 26 16 2.5062 -1.4428 0.0006 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.8610 2.0940 -0.0004 31 1 3.3006 3.5367 -0.0041 32 1 6.3416 3.9274 -0.0087 33 1 2.8028 5.2373 -0.0103 34 1 2.1761 7.6136 -0.0210 35 1 3.9148 9.3519 -0.0323 36 1 9.2202 11.3911 0.2571 37 1 6.9509 6.3434 -0.0094 38 1 5.6711 -1.2718 1.0141 39 1 5.3156 -2.0850 -0.5289 40 1 6.0153 -0.4484 -0.5260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730150556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:40 Heat of formation + Delta-G solvation = -17.492635 kcal Electronic energy + Delta-G solvation = -23310.220657 eV Core-core repulsion = 19760.828852 eV Total energy + Delta-G solvation = -3549.391805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.98674 -40.63493 -38.47459 -38.06362 -35.02317 -34.18996 -33.91610 -31.53390 -30.62855 -29.91407 -27.52309 -26.93150 -25.47528 -23.83304 -23.35807 -21.79585 -20.83552 -19.93058 -19.17266 -18.71669 -17.98246 -17.08073 -16.80461 -16.50450 -16.11702 -15.91337 -15.73883 -15.56684 -15.16774 -14.78640 -14.68353 -14.43831 -14.23999 -14.12718 -13.98935 -13.83437 -13.61664 -13.31510 -13.27215 -12.83000 -12.71350 -12.60542 -12.47591 -12.44125 -12.20583 -12.08310 -11.80042 -11.34261 -11.24323 -10.76469 -10.67522 -9.54944 -9.49135 -9.33751 -8.96998 -8.49920 -6.18536 -0.75228 -0.07405 0.51203 0.66450 0.79355 0.93012 1.32849 1.38566 1.46064 1.49683 2.14980 2.38967 2.84564 3.09439 3.16761 3.47719 3.69434 3.82257 3.89554 4.06854 4.15540 4.23971 4.35301 4.37291 4.45378 4.56339 4.58970 4.60153 4.68564 4.82720 4.87075 4.97965 5.07610 5.10253 5.12075 5.15244 5.20665 5.21652 5.38526 5.45709 5.59898 5.64037 5.74559 5.98792 6.13058 6.56581 6.94952 7.74042 8.72936 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002370 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.852619 B =11813.503576 C =13333.452836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.205 4.205 3 C -0.111 4.111 4 C -0.209 4.209 5 C 0.439 3.561 6 O -0.497 6.497 7 C -0.219 4.219 8 C -0.016 4.016 9 C -0.045 4.045 10 C -0.163 4.163 11 C -0.068 4.068 12 C -0.188 4.188 13 C 0.108 3.892 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.097 0.903 17 C -0.019 4.019 18 N -0.917 5.917 19 Si 1.014 2.986 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.222 4.222 24 C -0.165 4.165 25 C -0.097 4.097 26 S 0.210 5.790 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.459 -25.302 -0.154 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.322 4.322 3 C -0.138 4.138 4 C -0.224 4.224 5 C 0.323 3.677 6 O -0.380 6.380 7 C -0.237 4.237 8 C -0.035 4.035 9 C -0.045 4.045 10 C -0.181 4.181 11 C -0.086 4.086 12 C -0.207 4.207 13 C 0.058 3.942 14 O -0.136 6.136 15 C -0.491 4.491 16 H 0.115 0.885 17 C -0.217 4.217 18 N -0.555 5.555 19 Si 0.833 3.167 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.241 4.241 24 C -0.285 4.285 25 C -0.155 4.155 26 S 0.477 5.523 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.187 0.813 31 H 0.181 0.819 32 H 0.133 0.867 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.130 -26.579 -0.154 31.621 hybrid contribution 1.797 1.976 0.045 2.672 sum -15.332 -24.602 -0.109 28.989 Atomic orbital electron populations 1.20468 0.85260 1.04447 1.03931 1.24722 1.01816 0.95543 1.10121 1.21320 0.89694 1.00918 1.01879 1.20669 0.95267 0.93147 1.13348 1.20171 0.87257 0.89287 0.71035 1.90598 1.21944 1.85262 1.40159 1.23516 1.01721 0.91916 1.06583 1.22483 0.99944 0.91048 0.90054 1.18896 0.93867 0.91532 1.00224 1.21434 0.94381 0.96925 1.05320 1.21131 0.99484 0.91627 0.96313 1.20750 0.89644 1.01049 1.09243 1.19843 0.90653 0.88745 0.94971 1.83953 1.15552 1.32548 1.81576 1.21744 0.79994 0.94547 1.52804 0.88536 1.26502 1.04589 0.94749 0.95870 1.70161 1.35244 1.01576 1.48554 0.84655 0.74246 0.78564 0.79209 1.18773 1.19260 1.18076 1.21429 0.99929 0.92353 1.10382 1.24941 1.03132 0.97538 1.02848 1.20629 0.89937 1.01277 1.03673 1.82821 0.91873 1.08100 1.69490 0.89596 0.90256 0.89135 0.81284 0.81850 0.86705 0.82086 0.81660 0.86203 0.91750 0.86669 0.89968 0.89378 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.34 71.23 0.74 0.16 16 2 C -0.21 -2.74 6.44 24.51 0.16 -2.58 16 3 C -0.11 -1.80 9.70 22.66 0.22 -1.58 16 4 C -0.21 -4.64 5.98 -19.82 -0.12 -4.76 16 5 C 0.44 11.90 7.07 26.79 0.19 12.09 16 6 O -0.50 -16.37 13.96 -4.68 -0.07 -16.43 16 7 C -0.22 -5.47 9.01 23.64 0.21 -5.25 16 8 C -0.02 -0.51 9.46 23.86 0.23 -0.28 16 9 C -0.05 -1.58 5.87 -20.16 -0.12 -1.70 16 10 C -0.16 -4.61 9.41 22.60 0.21 -4.40 16 11 C -0.07 -2.02 10.02 22.21 0.22 -1.80 16 12 C -0.19 -7.58 9.99 22.47 0.22 -7.36 16 13 C 0.11 5.33 6.64 22.53 0.15 5.48 16 14 O -0.23 -13.82 9.76 -22.82 -0.22 -14.04 16 15 C -0.41 -24.50 9.48 67.92 0.64 -23.85 16 16 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.10 5.49 84.83 0.47 -0.64 16 18 N -0.92 -56.50 13.67 21.61 0.30 -56.20 16 19 Si 1.01 43.84 29.55 68.60 2.03 45.86 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.22 -9.85 8.91 22.71 0.20 -9.65 16 24 C -0.16 -3.33 6.35 25.19 0.16 -3.17 16 25 C -0.10 -1.87 9.60 71.24 0.68 -1.19 16 26 S 0.21 2.92 22.94 -56.49 -1.30 1.63 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.17 1.96 6.95 -2.91 -0.02 1.94 16 31 H 0.16 2.92 4.80 -2.91 -0.01 2.91 16 32 H 0.11 3.86 7.52 -2.91 -0.02 3.83 16 33 H 0.16 3.05 6.16 -2.91 -0.02 3.03 16 34 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.12 5.37 5.63 -2.91 -0.02 5.35 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.92 5.95 -2.39 -0.01 1.91 16 Total: -1.00 -75.25 358.31 6.30 -68.95 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.09 Total: 20.72 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 4.47 Total: -50.49 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.30 Total: -56.20 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.29 Total: -30.47 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.30 Total: 1.63 kcal Total: -75.25 6.30 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.462 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds