Wall clock time and date at job start Tue Mar 31 2020 15:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47150 * 2 1 4 4 C 1.33900 * 124.51865 * 89.99794 * 3 2 1 5 5 C 1.37416 * 115.10697 * 180.02562 * 4 3 2 6 6 C 1.36809 * 113.27568 * 359.97438 * 5 4 3 7 7 C 1.46652 * 125.45839 * 180.02562 * 6 5 4 8 8 O 1.21889 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.46493 * 119.99676 * 180.02562 * 7 6 5 10 10 C 1.34887 * 119.99311 * 179.97438 * 9 7 6 11 11 C 1.47184 * 119.99486 * 180.02562 * 10 9 7 12 12 C 1.39932 * 120.13989 * 359.97438 * 11 10 9 13 13 C 1.37920 * 119.96065 * 179.97438 * 12 11 10 14 14 C 1.38298 * 120.25288 * 359.97438 * 13 12 11 15 15 C 1.39007 * 120.27452 * 359.97438 * 14 13 12 16 16 O 1.35772 * 119.97926 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99912 * 174.47561 * 16 15 14 18 18 H 1.08005 * 119.99967 * 5.07833 * 17 16 15 19 19 C 1.38656 * 120.00066 * 185.07740 * 17 16 15 20 20 N 1.31555 * 120.00101 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99823 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47177 * 90.00166 * 21 19 17 23 23 H 1.48501 * 109.47152 * 210.00071 * 21 19 17 24 24 H 1.48500 * 109.47359 * 330.00212 * 21 19 17 25 25 C 1.38559 * 120.04091 * 359.78413 * 15 14 13 26 26 S 1.70615 * 124.51147 * 269.69676 * 3 2 1 27 27 H 1.09003 * 109.46655 * 60.00187 * 1 2 3 28 28 H 1.08994 * 109.47386 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47087 * 300.00831 * 1 2 3 30 30 H 1.09003 * 109.46648 * 119.99256 * 2 1 3 31 31 H 1.08993 * 109.47233 * 239.99444 * 2 1 3 32 32 H 1.08001 * 122.44585 * 359.97438 * 4 3 2 33 33 H 1.07997 * 123.35770 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.00055 * 359.97438 * 9 7 6 35 35 H 1.07997 * 120.00633 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.01473 * 359.95805 * 12 11 10 37 37 H 1.08001 * 119.87560 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.86359 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99913 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.12874 * 180.22785 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1362 1.1033 5 6 2.7367 3.4145 0.8785 6 6 2.8461 3.7235 -0.4497 7 6 3.3007 5.0091 -0.9894 8 8 3.6185 5.9099 -0.2322 9 6 3.3716 5.2111 -2.4386 10 6 3.7893 6.3937 -2.9350 11 6 3.8601 6.5969 -4.3910 12 6 3.4954 5.5650 -5.2629 13 6 3.5626 5.7595 -6.6267 14 6 3.9890 6.9720 -7.1374 15 6 4.3528 8.0043 -6.2805 16 8 4.7701 9.1923 -6.7883 17 6 4.9983 10.1879 -5.9082 18 1 4.9274 9.9977 -4.8474 19 6 5.3240 11.4559 -6.3649 20 7 5.5472 12.4272 -5.5062 21 14 5.4473 11.7846 -8.1996 22 1 4.1216 12.2096 -8.7166 23 1 6.4419 12.8600 -8.4441 24 1 5.8764 10.5457 -8.8968 25 6 4.2850 7.8234 -4.9084 26 16 2.3616 2.3297 -1.4059 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 2.1440 1.7379 2.0971 33 1 2.9814 4.1058 1.6713 34 1 3.0896 4.4131 -3.1095 35 1 4.0709 7.1918 -2.2641 36 1 3.1617 4.6167 -4.8682 37 1 3.2804 4.9623 -7.2984 38 1 4.0389 7.1176 -8.2063 39 1 5.7747 13.3144 -5.8258 40 1 4.5637 8.6257 -4.2414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730151946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:04 Heat of formation + Delta-G solvation = 0.741719 kcal Electronic energy + Delta-G solvation = -22968.748772 eV Core-core repulsion = 19420.147668 eV Total energy + Delta-G solvation = -3548.601104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.61730 -39.21199 -38.02008 -36.91617 -34.09064 -33.62338 -32.38799 -30.25098 -29.38661 -28.64958 -26.03730 -25.26754 -23.91787 -22.64939 -21.72098 -21.47852 -19.27208 -19.02430 -18.02431 -17.42408 -17.05045 -16.08538 -15.59025 -15.40465 -14.83821 -14.69786 -14.55605 -14.33885 -14.09594 -13.95769 -13.72077 -13.67341 -13.21267 -12.99703 -12.55284 -12.42323 -12.27900 -12.22252 -12.04006 -11.86432 -11.85961 -11.50690 -11.05777 -11.00586 -10.94381 -10.74626 -10.28595 -9.94276 -9.93526 -9.52417 -8.93553 -8.90647 -8.81841 -8.03108 -7.51806 -6.47428 -4.15561 0.07148 0.88216 1.25556 1.69694 2.04312 2.11820 2.54427 3.18058 3.21834 3.33931 3.36067 3.98355 4.18259 4.27453 4.40510 4.59068 4.72247 4.81772 4.98057 5.00815 5.02892 5.09299 5.14238 5.28339 5.35259 5.39289 5.48447 5.53181 5.64531 5.73599 5.76892 5.84213 5.91197 5.98093 6.11575 6.21534 6.38170 6.45539 6.60910 6.92325 7.00908 7.12039 7.42480 7.53472 7.68990 7.94522 8.86750 9.46049 10.59792 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.002155 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.694834 B =12987.287440 C =13959.193438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.200 4.200 4 C -0.156 4.156 5 C -0.060 4.060 6 C -0.282 4.282 7 C 0.454 3.546 8 O -0.460 6.460 9 C -0.264 4.264 10 C 0.022 3.978 11 C -0.053 4.053 12 C -0.177 4.177 13 C -0.084 4.084 14 C -0.172 4.172 15 C 0.152 3.848 16 O -0.214 6.214 17 C -0.394 4.394 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.186 4.186 26 S 0.224 5.776 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.281 0.719 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -24.150 8.372 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.319 4.319 4 C -0.187 4.187 5 C -0.093 4.093 6 C -0.400 4.400 7 C 0.336 3.664 8 O -0.340 6.340 9 C -0.283 4.283 10 C 0.004 3.996 11 C -0.053 4.053 12 C -0.196 4.196 13 C -0.102 4.102 14 C -0.192 4.192 15 C 0.099 3.901 16 O -0.119 6.119 17 C -0.469 4.469 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.512 5.512 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.205 4.205 26 S 0.493 5.507 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.094 -23.663 6.997 25.970 hybrid contribution 0.155 0.535 1.051 1.189 sum -7.939 -23.129 8.048 25.744 Atomic orbital electron populations 1.21808 0.94015 1.02184 1.02694 1.20154 0.96411 0.89414 1.03508 1.24408 1.06919 1.02185 0.98435 1.19943 1.04978 0.94269 0.99501 1.20860 0.96696 0.96258 0.95482 1.25205 1.15949 1.01076 0.97798 1.19333 0.73774 0.84216 0.89123 1.90709 1.39097 1.42485 1.61670 1.23182 1.10447 1.00126 0.94531 1.22714 0.86765 0.95947 0.94198 1.18717 1.00906 0.94303 0.91423 1.20902 1.06948 0.98514 0.93187 1.20599 0.98842 0.96030 0.94777 1.20425 1.06626 0.92946 0.99168 1.18994 0.92687 0.86923 0.91464 1.83596 1.73979 1.17474 1.36831 1.20758 1.48791 0.87227 0.90144 0.87576 1.24478 0.95543 0.93807 1.00100 1.69646 1.44708 1.02105 1.34774 0.86170 0.78459 0.78683 0.83517 1.19825 1.20709 1.18342 1.21553 1.05789 0.97616 0.95573 1.83021 1.58935 1.01867 1.06922 0.92268 0.91854 0.92182 0.89882 0.90558 0.84153 0.83207 0.85224 0.84904 0.86754 0.86314 0.86162 0.90920 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.90 37.16 0.37 -0.41 16 2 C -0.06 -0.32 6.37 -27.88 -0.18 -0.50 16 3 C -0.20 -1.64 5.53 -35.83 -0.20 -1.84 16 4 C -0.16 -1.37 10.00 -41.41 -0.41 -1.79 16 5 C -0.06 -0.66 10.02 -40.40 -0.40 -1.06 16 6 C -0.28 -3.41 6.42 -36.71 -0.24 -3.64 16 7 C 0.45 6.62 7.06 -32.86 -0.23 6.39 16 8 O -0.46 -8.01 16.74 5.02 0.08 -7.92 16 9 C -0.26 -3.70 9.08 -37.45 -0.34 -4.04 16 10 C 0.02 0.36 9.46 -37.14 -0.35 0.01 16 11 C -0.05 -0.94 5.87 -105.07 -0.62 -1.56 16 12 C -0.18 -2.76 9.41 -39.06 -0.37 -3.12 16 13 C -0.08 -1.31 10.02 -39.68 -0.40 -1.71 16 14 C -0.17 -3.19 9.99 -39.27 -0.39 -3.58 16 15 C 0.15 3.35 6.64 -39.18 -0.26 3.09 16 16 O -0.21 -5.47 8.58 -0.02 0.00 -5.47 16 17 C -0.39 -10.86 9.94 30.89 0.31 -10.55 16 18 H 0.11 2.99 5.43 -52.48 -0.28 2.70 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -24.98 13.96 55.48 0.77 -24.21 16 21 Si 0.91 21.25 28.62 -169.99 -4.86 16.39 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.19 -3.89 8.91 -38.90 -0.35 -4.23 16 26 S 0.22 2.06 22.04 -107.50 -2.37 -0.31 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.13 1.54 5.42 -52.49 -0.28 1.26 16 35 H 0.13 2.18 7.52 -52.49 -0.39 1.79 16 36 H 0.11 1.44 6.16 -52.49 -0.32 1.12 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 3.07 5.63 -52.49 -0.30 2.78 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -30.29 362.78 -9.59 -39.88 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.52 Total: 3.02 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -4.16 Total: -26.85 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.77 Total: -24.21 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.39 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.37 Total: -0.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.29 -9.59 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.620 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds