Wall clock time and date at job start Tue Mar 31 2020 15:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47150 * 2 1 4 4 C 1.33900 * 124.51865 * 89.99794 * 3 2 1 5 5 C 1.37416 * 115.10697 * 180.02562 * 4 3 2 6 6 C 1.36809 * 113.27568 * 359.97438 * 5 4 3 7 7 C 1.46652 * 125.45839 * 180.02562 * 6 5 4 8 8 O 1.21889 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.46493 * 119.99676 * 180.02562 * 7 6 5 10 10 C 1.34887 * 119.99311 * 179.97438 * 9 7 6 11 11 C 1.47184 * 119.99486 * 180.02562 * 10 9 7 12 12 C 1.39932 * 120.13989 * 359.97438 * 11 10 9 13 13 C 1.37920 * 119.96065 * 179.97438 * 12 11 10 14 14 C 1.38298 * 120.25288 * 359.97438 * 13 12 11 15 15 C 1.39007 * 120.27452 * 359.97438 * 14 13 12 16 16 O 1.35772 * 119.97926 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99912 * 174.47561 * 16 15 14 18 18 H 1.08005 * 119.99967 * 5.07833 * 17 16 15 19 19 C 1.38656 * 120.00066 * 185.07740 * 17 16 15 20 20 N 1.31555 * 120.00101 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99823 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47177 * 90.00166 * 21 19 17 23 23 H 1.48501 * 109.47152 * 210.00071 * 21 19 17 24 24 H 1.48500 * 109.47359 * 330.00212 * 21 19 17 25 25 C 1.38559 * 120.04091 * 359.78413 * 15 14 13 26 26 S 1.70615 * 124.51147 * 269.69676 * 3 2 1 27 27 H 1.09003 * 109.46655 * 60.00187 * 1 2 3 28 28 H 1.08994 * 109.47386 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47087 * 300.00831 * 1 2 3 30 30 H 1.09003 * 109.46648 * 119.99256 * 2 1 3 31 31 H 1.08993 * 109.47233 * 239.99444 * 2 1 3 32 32 H 1.08001 * 122.44585 * 359.97438 * 4 3 2 33 33 H 1.07997 * 123.35770 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.00055 * 359.97438 * 9 7 6 35 35 H 1.07997 * 120.00633 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.01473 * 359.95805 * 12 11 10 37 37 H 1.08001 * 119.87560 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.86359 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99913 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.12874 * 180.22785 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1362 1.1033 5 6 2.7367 3.4145 0.8785 6 6 2.8461 3.7235 -0.4497 7 6 3.3007 5.0091 -0.9894 8 8 3.6185 5.9099 -0.2322 9 6 3.3716 5.2111 -2.4386 10 6 3.7893 6.3937 -2.9350 11 6 3.8601 6.5969 -4.3910 12 6 3.4954 5.5650 -5.2629 13 6 3.5626 5.7595 -6.6267 14 6 3.9890 6.9720 -7.1374 15 6 4.3528 8.0043 -6.2805 16 8 4.7701 9.1923 -6.7883 17 6 4.9983 10.1879 -5.9082 18 1 4.9274 9.9977 -4.8474 19 6 5.3240 11.4559 -6.3649 20 7 5.5472 12.4272 -5.5062 21 14 5.4473 11.7846 -8.1996 22 1 4.1216 12.2096 -8.7166 23 1 6.4419 12.8600 -8.4441 24 1 5.8764 10.5457 -8.8968 25 6 4.2850 7.8234 -4.9084 26 16 2.3616 2.3297 -1.4059 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 2.1440 1.7379 2.0971 33 1 2.9814 4.1058 1.6713 34 1 3.0896 4.4131 -3.1095 35 1 4.0709 7.1918 -2.2641 36 1 3.1617 4.6167 -4.8682 37 1 3.2804 4.9623 -7.2984 38 1 4.0389 7.1176 -8.2063 39 1 5.7747 13.3144 -5.8258 40 1 4.5637 8.6257 -4.2414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730151946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:03 Heat of formation + Delta-G solvation = -14.361519 kcal Electronic energy + Delta-G solvation = -22969.403698 eV Core-core repulsion = 19420.147668 eV Total energy + Delta-G solvation = -3549.256030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01503 -40.55412 -38.87988 -38.47164 -35.04704 -34.66454 -34.34571 -31.57497 -30.71147 -29.72962 -27.34906 -26.74300 -24.96674 -23.27227 -23.24327 -22.66711 -20.57993 -20.05573 -19.73245 -18.76639 -18.29194 -17.01070 -16.91103 -16.80634 -16.19476 -15.82176 -15.76312 -15.64117 -15.34268 -15.30138 -14.93718 -14.61253 -14.35842 -14.15625 -14.03731 -13.80887 -13.43120 -13.41348 -13.24114 -12.82493 -12.71942 -12.57503 -12.37514 -12.22401 -12.02286 -12.00246 -11.65714 -11.45613 -11.32570 -11.09201 -10.87444 -9.71176 -9.54424 -9.46415 -9.07369 -8.51829 -6.26185 -0.95301 -0.25531 0.49497 0.61039 0.92688 0.93602 1.31019 1.35504 1.51628 1.54899 2.19790 2.26710 2.77581 2.87611 3.02802 3.13920 3.70638 3.78645 3.83398 4.10597 4.14610 4.21010 4.32196 4.34438 4.39722 4.42372 4.47910 4.52271 4.80175 4.89219 4.89927 4.99487 5.01252 5.07423 5.13962 5.20365 5.25590 5.35278 5.37640 5.43386 5.53863 5.66389 5.73029 5.85322 6.15315 6.39884 6.81654 7.53643 8.59810 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.002155 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.694834 B =12987.287440 C =13959.193438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.184 4.184 4 C -0.168 4.168 5 C -0.058 4.058 6 C -0.326 4.326 7 C 0.451 3.549 8 O -0.502 6.502 9 C -0.230 4.230 10 C -0.007 4.007 11 C -0.052 4.052 12 C -0.154 4.154 13 C -0.068 4.068 14 C -0.171 4.171 15 C 0.114 3.886 16 O -0.241 6.241 17 C -0.402 4.402 18 H 0.077 0.923 19 C 0.007 3.993 20 N -0.924 5.924 21 Si 0.975 3.025 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.214 4.214 26 S 0.260 5.740 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.112 0.888 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.137 0.863 39 H 0.285 0.715 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 -29.531 7.040 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.304 4.304 4 C -0.197 4.197 5 C -0.092 4.092 6 C -0.443 4.443 7 C 0.335 3.665 8 O -0.384 6.384 9 C -0.248 4.248 10 C -0.026 4.026 11 C -0.052 4.052 12 C -0.172 4.172 13 C -0.086 4.086 14 C -0.190 4.190 15 C 0.065 3.935 16 O -0.149 6.149 17 C -0.478 4.478 18 H 0.094 0.906 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.234 4.234 26 S 0.529 5.471 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.911 -29.102 5.665 31.261 hybrid contribution 0.537 1.690 1.705 2.460 sum -9.375 -27.412 7.370 29.894 Atomic orbital electron populations 1.21818 0.93476 1.03157 1.02264 1.20329 0.96719 0.87658 1.04979 1.24873 1.04587 1.03159 0.97824 1.20109 1.05268 0.93399 1.00945 1.21052 0.95828 0.97167 0.95123 1.25021 1.18934 1.01319 0.99063 1.19698 0.72766 0.84915 0.89130 1.90697 1.41069 1.44182 1.62487 1.23431 1.07041 0.99470 0.94871 1.22512 0.89822 0.96844 0.93400 1.18870 1.00216 0.93631 0.92529 1.21489 1.03605 0.99000 0.93104 1.21201 0.96132 0.95759 0.95472 1.20836 1.05596 0.92860 0.99725 1.19596 0.94386 0.86917 0.92619 1.83529 1.76875 1.18278 1.36232 1.20661 1.49108 0.88511 0.89526 0.90586 1.25355 0.95426 0.93424 1.04892 1.69745 1.47157 1.02734 1.36813 0.85152 0.78937 0.78574 0.77633 1.18949 1.19335 1.18317 1.21471 1.08055 0.98645 0.95197 1.82746 1.57919 0.99896 1.06495 0.92762 0.90266 0.92599 0.88320 0.89251 0.81975 0.83834 0.82079 0.86997 0.82244 0.80932 0.84471 0.90541 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 71.98 0.71 -0.27 16 2 C -0.06 -0.41 6.37 29.85 0.19 -0.22 16 3 C -0.18 -2.37 5.53 24.70 0.14 -2.23 16 4 C -0.17 -2.50 10.00 21.09 0.21 -2.29 16 5 C -0.06 -1.19 10.02 21.74 0.22 -0.98 16 6 C -0.33 -7.41 6.42 24.13 0.15 -7.25 16 7 C 0.45 13.09 7.06 26.62 0.19 13.28 16 8 O -0.50 -18.36 16.74 -4.96 -0.08 -18.45 16 9 C -0.23 -6.10 9.08 23.65 0.21 -5.89 16 10 C -0.01 -0.23 9.46 23.85 0.23 0.00 16 11 C -0.05 -1.84 5.87 -20.16 -0.12 -1.96 16 12 C -0.15 -4.15 9.41 22.60 0.21 -3.94 16 13 C -0.07 -1.78 10.02 22.21 0.22 -1.56 16 14 C -0.17 -6.00 9.99 22.47 0.22 -5.78 16 15 C 0.11 5.21 6.64 22.53 0.15 5.36 16 16 O -0.24 -13.01 8.58 -22.97 -0.20 -13.20 16 17 C -0.40 -23.94 9.94 67.92 0.68 -23.26 16 18 H 0.08 4.81 5.43 -2.91 -0.02 4.80 16 19 C 0.01 0.43 5.49 84.83 0.47 0.90 16 20 N -0.92 -56.12 13.96 21.61 0.30 -55.82 16 21 Si 0.98 45.45 28.62 68.60 1.96 47.41 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 C -0.21 -9.57 8.91 22.71 0.20 -9.36 16 26 S 0.26 3.87 22.04 -56.49 -1.25 2.62 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 3.13 5.42 -2.91 -0.02 3.11 16 35 H 0.11 4.10 7.52 -2.91 -0.02 4.08 16 36 H 0.16 2.91 6.16 -2.91 -0.02 2.89 16 37 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.11 5.34 5.63 -2.91 -0.02 5.33 16 Total: -1.00 -73.34 362.78 6.10 -67.24 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.07 Total: 15.66 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 4.29 Total: -45.45 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.30 Total: -55.82 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.28 Total: -31.65 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.96 Total: 47.41 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.25 Total: 2.62 kcal Total: -73.34 6.10 -67.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.881 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds