Wall clock time and date at job start Tue Mar 31 2020 15:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50698 * 109.47208 * 2 1 4 4 C 1.33892 * 124.51324 * 90.00134 * 3 2 1 5 5 C 1.37421 * 115.10365 * 180.02562 * 4 3 2 6 6 C 1.36808 * 113.28090 * 359.97438 * 5 4 3 7 7 C 1.46640 * 125.46416 * 180.02562 * 6 5 4 8 8 O 1.21891 * 120.00008 * 0.02562 * 7 6 5 9 9 C 1.46489 * 120.00197 * 179.97438 * 7 6 5 10 10 C 1.34884 * 120.00405 * 173.48966 * 9 7 6 11 11 C 1.47183 * 119.99624 * 348.71184 * 10 9 7 12 12 C 1.39933 * 120.13549 * 136.98299 * 11 10 9 13 13 C 1.37929 * 119.95943 * 179.97438 * 12 11 10 14 14 C 1.38291 * 120.24698 * 359.97438 * 13 12 11 15 15 C 1.39010 * 120.28413 * 359.97438 * 14 13 12 16 16 O 1.35760 * 119.98373 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00220 * 354.39176 * 16 15 14 18 18 H 1.08004 * 119.99412 * 5.06159 * 17 16 15 19 19 C 1.38651 * 120.00426 * 185.06380 * 17 16 15 20 20 N 1.31562 * 119.99760 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00351 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47444 * 59.99552 * 21 19 17 23 23 H 1.48498 * 109.47389 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46772 * 299.99717 * 21 19 17 25 25 C 1.38563 * 120.03072 * 359.78277 * 15 14 13 26 26 S 1.70611 * 124.51589 * 269.70126 * 3 2 1 27 27 H 1.08995 * 109.47279 * 59.99680 * 1 2 3 28 28 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 299.99659 * 1 2 3 30 30 H 1.08997 * 109.46776 * 120.00442 * 2 1 3 31 31 H 1.09004 * 109.46707 * 240.00341 * 2 1 3 32 32 H 1.07999 * 122.45310 * 0.02562 * 4 3 2 33 33 H 1.08007 * 123.36213 * 179.97438 * 5 4 3 34 34 H 1.08007 * 119.99713 * 353.49172 * 9 7 6 35 35 H 1.07996 * 120.00443 * 168.71726 * 10 9 7 36 36 H 1.07997 * 120.01825 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.87087 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.85689 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99994 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.12274 * 180.23059 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1360 1.1033 5 6 2.7367 3.4144 0.8786 6 6 2.8461 3.7236 -0.4496 7 6 3.3007 5.0091 -0.9892 8 8 3.6195 5.9095 -0.2320 9 6 3.3727 5.2108 -2.4384 10 6 3.6634 6.4304 -2.9360 11 6 3.6636 7.6057 -2.0500 12 6 4.6835 8.5588 -2.1475 13 6 4.6798 9.6591 -1.3158 14 6 3.6708 9.8252 -0.3848 15 6 2.6520 8.8852 -0.2799 16 8 1.6642 9.0546 0.6359 17 6 1.7916 10.0909 1.4890 18 1 2.6076 10.7888 1.3728 19 6 0.8751 10.2605 2.5155 20 7 -0.1192 9.4106 2.6567 21 14 1.0511 11.6965 3.6971 22 1 0.9817 12.9721 2.9399 23 1 -0.0475 11.6538 4.6954 24 1 2.3587 11.6057 4.3951 25 6 2.6416 7.7781 -1.1130 26 16 2.3616 2.3298 -1.4058 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 2.1449 1.7375 2.0971 33 1 2.9808 4.1060 1.6714 34 1 3.1930 4.3830 -3.1084 35 1 3.8960 6.5445 -3.9844 36 1 5.4730 8.4329 -2.8735 37 1 5.4674 10.3941 -1.3926 38 1 3.6738 10.6893 0.2630 39 1 -0.7602 9.5290 3.3750 40 1 1.8488 7.0488 -1.0353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730151947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:10 Heat of formation + Delta-G solvation = 16.929836 kcal Electronic energy + Delta-G solvation = -24092.989865 eV Core-core repulsion = 20545.090730 eV Total energy + Delta-G solvation = -3547.899135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.67626 -38.62921 -37.78212 -36.32396 -33.87074 -33.26331 -32.17245 -29.90322 -29.04759 -28.31610 -25.77629 -25.18469 -23.58442 -22.40970 -21.67719 -21.16374 -19.41919 -18.75584 -17.74567 -17.19347 -16.46005 -16.04669 -15.11464 -15.05350 -14.62176 -14.49584 -14.29792 -14.16233 -14.00324 -13.83657 -13.38628 -13.27527 -13.02099 -12.82243 -12.40734 -12.27258 -12.22193 -11.91529 -11.66953 -11.63020 -11.33469 -11.30443 -10.90431 -10.89379 -10.75593 -10.61638 -10.42101 -9.57266 -9.48855 -9.24787 -8.76182 -8.61408 -8.56415 -7.55664 -7.13020 -6.35776 -3.94173 0.35626 1.18585 1.50055 1.92167 2.38439 2.47086 2.68326 3.17527 3.19315 3.21568 3.56846 4.03568 4.27291 4.48793 4.67036 4.77248 4.98316 5.00374 5.19179 5.21560 5.29358 5.40781 5.44817 5.51156 5.56711 5.62088 5.72579 5.72929 5.89346 5.93033 6.01545 6.11174 6.17420 6.32419 6.39785 6.40179 6.49418 6.76102 6.97465 7.12485 7.27384 7.40875 7.49934 7.85638 7.92127 8.08588 9.09635 9.81960 10.82550 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.003469 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.971061 B = 8068.965872 C =10025.503210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.203 4.203 4 C -0.151 4.151 5 C -0.060 4.060 6 C -0.272 4.272 7 C 0.432 3.568 8 O -0.408 6.408 9 C -0.250 4.250 10 C 0.007 3.993 11 C -0.053 4.053 12 C -0.183 4.183 13 C -0.087 4.087 14 C -0.217 4.217 15 C 0.147 3.853 16 O -0.180 6.180 17 C -0.389 4.389 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.865 5.865 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.116 4.116 26 S 0.200 5.800 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -16.358 -9.017 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.322 4.322 4 C -0.182 4.182 5 C -0.092 4.092 6 C -0.390 4.390 7 C 0.309 3.691 8 O -0.284 6.284 9 C -0.269 4.269 10 C -0.012 4.012 11 C -0.054 4.054 12 C -0.202 4.202 13 C -0.106 4.106 14 C -0.237 4.237 15 C 0.094 3.906 16 O -0.084 6.084 17 C -0.465 4.465 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.136 4.136 26 S 0.468 5.532 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.650 -16.342 -9.956 19.693 hybrid contribution 0.175 0.869 2.244 2.413 sum 4.825 -15.473 -7.712 17.949 Atomic orbital electron populations 1.21813 0.94105 1.01988 1.02838 1.20121 0.96359 0.89526 1.03227 1.24283 1.07648 1.02042 0.98211 1.19964 1.04469 0.94286 0.99463 1.20937 0.96349 0.96132 0.95791 1.25329 1.15188 1.00868 0.97650 1.19358 0.75935 0.84404 0.89438 1.90946 1.35644 1.40359 1.61407 1.23236 1.09684 0.98645 0.95349 1.22578 0.88223 0.91631 0.98735 1.18405 0.96162 0.94105 0.96703 1.20611 0.99970 0.96217 1.03367 1.20591 0.97512 0.96990 0.95476 1.21282 0.97394 1.01910 1.03084 1.19129 0.88306 0.92779 0.90362 1.83988 1.38179 1.47332 1.38938 1.21245 1.13564 1.03634 1.08105 0.89301 1.25249 0.95288 0.98756 0.97223 1.70040 1.13303 1.35300 1.31356 0.85816 0.78284 0.80058 0.79459 1.19580 1.20332 1.19565 1.20065 1.00021 0.96622 0.96854 1.82723 1.60234 1.02548 1.07655 0.92309 0.92013 0.92058 0.90007 0.90805 0.84203 0.82998 0.85411 0.85005 0.87542 0.87400 0.85628 0.92146 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.05 -0.42 6.36 -27.88 -0.18 -0.60 16 3 C -0.20 -2.20 5.53 -35.84 -0.20 -2.39 16 4 C -0.15 -1.85 10.00 -41.41 -0.41 -2.27 16 5 C -0.06 -0.90 10.02 -40.40 -0.40 -1.31 16 6 C -0.27 -4.12 6.42 -36.71 -0.24 -4.36 16 7 C 0.43 7.48 6.10 -32.87 -0.20 7.28 16 8 O -0.41 -8.82 12.65 5.02 0.06 -8.76 16 9 C -0.25 -3.55 9.57 -37.45 -0.36 -3.91 16 10 C 0.01 0.10 9.81 -37.14 -0.36 -0.27 16 11 C -0.05 -1.02 4.55 -105.08 -0.48 -1.50 16 12 C -0.18 -3.33 9.79 -39.06 -0.38 -3.71 16 13 C -0.09 -1.70 10.02 -39.67 -0.40 -2.10 16 14 C -0.22 -5.01 9.17 -39.28 -0.36 -5.37 16 15 C 0.15 3.79 6.64 -39.18 -0.26 3.53 16 16 O -0.18 -5.42 9.75 0.02 0.00 -5.42 16 17 C -0.39 -11.33 9.49 30.88 0.29 -11.04 16 18 H 0.09 2.39 5.19 -52.48 -0.27 2.12 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -26.18 13.67 55.48 0.76 -25.43 16 21 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C -0.12 -2.67 6.53 -38.91 -0.25 -2.93 16 26 S 0.20 2.24 22.06 -107.50 -2.37 -0.13 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 34 H 0.13 1.38 7.43 -52.48 -0.39 0.99 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.11 2.54 6.99 -52.48 -0.37 2.18 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -34.03 358.93 -9.77 -43.80 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.69 Total: 5.01 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -3.92 Total: -30.69 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.76 Total: -25.43 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.06 Total: -14.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.37 Total: -0.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.03 -9.77 -43.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.734 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds