Wall clock time and date at job start Tue Mar 31 2020 15:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50698 * 109.47208 * 2 1 4 4 C 1.33892 * 124.51324 * 90.00134 * 3 2 1 5 5 C 1.37421 * 115.10365 * 180.02562 * 4 3 2 6 6 C 1.36808 * 113.28090 * 359.97438 * 5 4 3 7 7 C 1.46640 * 125.46416 * 180.02562 * 6 5 4 8 8 O 1.21891 * 120.00008 * 0.02562 * 7 6 5 9 9 C 1.46489 * 120.00197 * 179.97438 * 7 6 5 10 10 C 1.34884 * 120.00405 * 173.48966 * 9 7 6 11 11 C 1.47183 * 119.99624 * 348.71184 * 10 9 7 12 12 C 1.39933 * 120.13549 * 136.98299 * 11 10 9 13 13 C 1.37929 * 119.95943 * 179.97438 * 12 11 10 14 14 C 1.38291 * 120.24698 * 359.97438 * 13 12 11 15 15 C 1.39010 * 120.28413 * 359.97438 * 14 13 12 16 16 O 1.35760 * 119.98373 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00220 * 354.39176 * 16 15 14 18 18 H 1.08004 * 119.99412 * 5.06159 * 17 16 15 19 19 C 1.38651 * 120.00426 * 185.06380 * 17 16 15 20 20 N 1.31562 * 119.99760 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00351 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47444 * 59.99552 * 21 19 17 23 23 H 1.48498 * 109.47389 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46772 * 299.99717 * 21 19 17 25 25 C 1.38563 * 120.03072 * 359.78277 * 15 14 13 26 26 S 1.70611 * 124.51589 * 269.70126 * 3 2 1 27 27 H 1.08995 * 109.47279 * 59.99680 * 1 2 3 28 28 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 299.99659 * 1 2 3 30 30 H 1.08997 * 109.46776 * 120.00442 * 2 1 3 31 31 H 1.09004 * 109.46707 * 240.00341 * 2 1 3 32 32 H 1.07999 * 122.45310 * 0.02562 * 4 3 2 33 33 H 1.08007 * 123.36213 * 179.97438 * 5 4 3 34 34 H 1.08007 * 119.99713 * 353.49172 * 9 7 6 35 35 H 1.07996 * 120.00443 * 168.71726 * 10 9 7 36 36 H 1.07997 * 120.01825 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.87087 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.85689 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99994 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.12274 * 180.23059 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1360 1.1033 5 6 2.7367 3.4144 0.8786 6 6 2.8461 3.7236 -0.4496 7 6 3.3007 5.0091 -0.9892 8 8 3.6195 5.9095 -0.2320 9 6 3.3727 5.2108 -2.4384 10 6 3.6634 6.4304 -2.9360 11 6 3.6636 7.6057 -2.0500 12 6 4.6835 8.5588 -2.1475 13 6 4.6798 9.6591 -1.3158 14 6 3.6708 9.8252 -0.3848 15 6 2.6520 8.8852 -0.2799 16 8 1.6642 9.0546 0.6359 17 6 1.7916 10.0909 1.4890 18 1 2.6076 10.7888 1.3728 19 6 0.8751 10.2605 2.5155 20 7 -0.1192 9.4106 2.6567 21 14 1.0511 11.6965 3.6971 22 1 0.9817 12.9721 2.9399 23 1 -0.0475 11.6538 4.6954 24 1 2.3587 11.6057 4.3951 25 6 2.6416 7.7781 -1.1130 26 16 2.3616 2.3298 -1.4058 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 2.1449 1.7375 2.0971 33 1 2.9808 4.1060 1.6714 34 1 3.1930 4.3830 -3.1084 35 1 3.8960 6.5445 -3.9844 36 1 5.4730 8.4329 -2.8735 37 1 5.4674 10.3941 -1.3926 38 1 3.6738 10.6893 0.2630 39 1 -0.7602 9.5290 3.3750 40 1 1.8488 7.0488 -1.0353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730151947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:09 Heat of formation + Delta-G solvation = -2.705151 kcal Electronic energy + Delta-G solvation = -24093.841302 eV Core-core repulsion = 20545.090730 eV Total energy + Delta-G solvation = -3548.750572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16467 -40.26100 -38.92824 -38.04140 -34.71241 -34.67228 -34.21348 -31.35756 -30.65243 -29.56743 -27.38133 -26.72414 -24.81684 -23.34251 -23.11120 -22.82082 -20.78880 -19.98018 -19.33880 -18.99203 -17.80887 -17.11129 -16.85139 -16.47142 -16.24442 -15.91949 -15.66764 -15.45231 -15.37418 -14.98802 -14.90496 -14.54502 -14.32198 -14.13400 -13.81836 -13.71736 -13.57326 -13.24558 -13.04837 -12.81016 -12.61114 -12.46731 -12.37601 -12.30694 -12.17491 -12.06523 -11.70721 -11.25615 -10.97655 -10.85028 -10.70668 -9.67284 -9.51039 -9.11943 -8.95042 -8.47173 -6.15611 -0.82528 -0.06807 0.50262 0.78514 0.89857 0.93952 1.30678 1.42418 1.47912 1.51789 2.16436 2.31414 2.84627 3.11117 3.18657 3.48034 3.69324 3.87063 4.09146 4.11971 4.22128 4.30127 4.33173 4.39083 4.44642 4.47525 4.49598 4.69531 4.77465 4.85755 4.90994 5.02490 5.04009 5.10498 5.13207 5.18833 5.28358 5.31833 5.37317 5.43462 5.65799 5.72073 5.72896 6.02049 6.21076 6.63694 6.96710 7.80748 8.76687 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.003469 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.971061 B = 8068.965872 C =10025.503210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.170 4.170 5 C -0.078 4.078 6 C -0.320 4.320 7 C 0.421 3.579 8 O -0.471 6.471 9 C -0.240 4.240 10 C 0.003 3.997 11 C -0.048 4.048 12 C -0.163 4.163 13 C -0.085 4.085 14 C -0.234 4.234 15 C 0.102 3.898 16 O -0.239 6.239 17 C -0.414 4.414 18 H 0.099 0.901 19 C -0.026 4.026 20 N -0.924 5.924 21 Si 1.020 2.980 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.260 1.260 25 C -0.130 4.130 26 S 0.277 5.723 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.172 0.828 35 H 0.190 0.810 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.117 0.883 39 H 0.271 0.729 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -18.130 -12.185 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.310 4.310 4 C -0.200 4.200 5 C -0.111 4.111 6 C -0.438 4.438 7 C 0.302 3.698 8 O -0.351 6.351 9 C -0.258 4.258 10 C -0.014 4.014 11 C -0.048 4.048 12 C -0.181 4.181 13 C -0.103 4.103 14 C -0.254 4.254 15 C 0.052 3.948 16 O -0.147 6.147 17 C -0.490 4.490 18 H 0.116 0.884 19 C -0.223 4.223 20 N -0.563 5.563 21 Si 0.839 3.161 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.150 4.150 26 S 0.546 5.454 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.189 0.811 35 H 0.207 0.793 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.675 -18.140 -13.193 23.403 hybrid contribution -0.292 1.120 2.973 3.190 sum 6.383 -17.020 -10.220 20.854 Atomic orbital electron populations 1.21832 0.93718 1.03229 1.02051 1.20318 0.96503 0.87370 1.05123 1.24837 1.05033 1.03350 0.97757 1.20023 1.05584 0.93356 1.01004 1.20971 0.97360 0.97162 0.95634 1.25385 1.17357 1.02293 0.98722 1.20147 0.74243 0.84438 0.90952 1.90924 1.38853 1.42339 1.62987 1.23554 1.08213 1.00273 0.93796 1.22966 0.88404 0.89624 1.00439 1.18930 0.94511 0.95877 0.95478 1.21282 0.99816 0.94384 1.02655 1.21076 0.96941 0.98350 0.93933 1.21408 0.98141 1.01310 1.04511 1.19719 0.89211 0.94940 0.90909 1.83943 1.40939 1.48732 1.41052 1.21783 1.14322 1.04087 1.08800 0.88355 1.26634 0.94535 1.02168 0.98929 1.70206 1.14940 1.38263 1.32867 0.84644 0.78753 0.76068 0.76669 1.17810 1.19377 1.18410 1.20134 1.01169 0.95485 0.98174 1.82259 1.58046 0.99174 1.05958 0.92684 0.89817 0.93332 0.88499 0.88570 0.82796 0.86021 0.81088 0.79296 0.82247 0.83278 0.86501 0.91965 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.90 71.99 0.71 -1.17 16 2 C -0.05 -0.68 6.36 29.85 0.19 -0.49 16 3 C -0.19 -3.78 5.53 24.70 0.14 -3.64 16 4 C -0.17 -4.24 10.00 21.09 0.21 -4.03 16 5 C -0.08 -2.54 10.02 21.74 0.22 -2.32 16 6 C -0.32 -9.99 6.42 24.13 0.15 -9.83 16 7 C 0.42 15.06 6.10 26.62 0.16 15.22 16 8 O -0.47 -21.94 12.65 -4.96 -0.06 -22.01 16 9 C -0.24 -6.26 9.57 23.65 0.23 -6.03 16 10 C 0.00 0.09 9.81 23.85 0.23 0.32 16 11 C -0.05 -1.77 4.55 -20.16 -0.09 -1.86 16 12 C -0.16 -5.39 9.79 22.61 0.22 -5.17 16 13 C -0.09 -3.15 10.02 22.21 0.22 -2.93 16 14 C -0.23 -11.25 9.17 22.47 0.21 -11.05 16 15 C 0.10 5.66 6.64 22.53 0.15 5.80 16 16 O -0.24 -15.82 9.75 -22.86 -0.22 -16.05 16 17 C -0.41 -26.03 9.49 67.92 0.64 -25.38 16 18 H 0.10 5.68 5.19 -2.91 -0.02 5.67 16 19 C -0.03 -1.58 5.49 84.83 0.47 -1.11 16 20 N -0.92 -60.24 13.67 21.61 0.30 -59.95 16 21 Si 1.02 45.55 29.55 68.60 2.03 47.58 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 C -0.13 -6.35 6.53 22.71 0.15 -6.20 16 26 S 0.28 5.56 22.06 -56.49 -1.25 4.31 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 32 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.17 2.90 7.43 -2.91 -0.02 2.88 16 35 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 5.65 5.62 -2.91 -0.02 5.63 16 39 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 40 H 0.08 4.38 6.99 -2.91 -0.02 4.36 16 Total: -1.00 -86.61 358.93 6.07 -80.54 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.06 Total: 25.43 kcal Atomic # 6 Polarization: -64.08 SS G_CDS: 4.21 Total: -59.87 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.95 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.29 Total: -38.05 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.25 Total: 4.31 kcal Total: -86.61 6.07 -80.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.839 kcal (2) G-P(sol) polarization free energy of solvation -86.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds