Wall clock time and date at job start Tue Mar 31 2020 14:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47307 * 270.00867 * 3 2 1 5 5 H 1.48509 * 109.46583 * 30.00523 * 3 2 1 6 6 H 1.48501 * 109.47077 * 150.00260 * 3 2 1 7 7 C 1.37877 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47556 * 180.02562 * 10 9 7 12 12 O 1.45192 * 109.47508 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00088 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00047 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99932 * 180.02562 * 13 12 11 16 16 F 1.39900 * 109.47515 * 60.00084 * 15 13 12 17 17 F 1.39897 * 109.47274 * 299.99990 * 15 13 12 18 18 O 1.42905 * 109.47264 * 180.02562 * 15 13 12 19 19 C 1.35651 * 117.00043 * 179.97438 * 18 15 13 20 20 C 1.39087 * 119.88940 * 359.72889 * 19 18 15 21 21 C 1.37117 * 120.11837 * 179.71941 * 20 19 18 22 22 C 1.40038 * 119.87860 * 0.57369 * 21 20 19 23 23 C 1.46863 * 120.11121 * 179.68011 * 22 21 20 24 24 O 1.21291 * 120.00253 * 180.02562 * 23 22 21 25 25 C 1.40038 * 119.77736 * 359.70142 * 22 21 20 26 26 C 1.37120 * 119.88081 * 359.97438 * 25 22 21 27 27 H 0.96994 * 120.00093 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47409 * 60.00217 * 9 7 2 29 29 H 1.08996 * 109.47695 * 300.00088 * 9 7 2 30 30 H 1.08998 * 109.47380 * 59.99514 * 10 9 7 31 31 H 1.09009 * 109.46743 * 300.00179 * 10 9 7 32 32 H 1.09004 * 109.46701 * 59.99293 * 11 10 9 33 33 H 1.09001 * 109.46610 * 300.00192 * 11 10 9 34 34 H 1.08001 * 119.93864 * 359.97438 * 20 19 18 35 35 H 1.07999 * 120.06055 * 180.26911 * 21 20 19 36 36 H 1.07995 * 119.99929 * 0.02562 * 23 22 21 37 37 H 1.08004 * 120.05943 * 179.97438 * 25 22 21 38 38 H 1.07995 * 119.94082 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 8 6.0356 -4.0054 -0.0027 13 6 7.3663 -4.1813 -0.0033 14 8 8.1023 -3.2230 -0.0029 15 6 7.9423 -5.5739 -0.0044 16 9 7.5108 -6.2562 -1.1470 17 9 7.5116 -6.2576 1.1375 18 8 9.3694 -5.4991 -0.0042 19 6 10.0477 -6.6739 -0.0046 20 6 9.3499 -7.8770 0.0006 21 6 10.0307 -9.0673 -0.0056 22 6 11.4311 -9.0699 -0.0050 23 6 12.1654 -10.3418 -0.0045 24 8 13.3783 -10.3418 -0.0035 25 6 12.1289 -7.8558 -0.0044 26 6 11.4385 -6.6711 -0.0049 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1498 -0.8924 31 1 3.6586 -3.1509 0.8876 32 1 5.9149 -2.1233 0.8882 33 1 5.9149 -2.1219 -0.8918 34 1 8.2699 -7.8738 0.0053 35 1 9.4879 -10.0009 -0.0060 36 1 11.6254 -11.2771 -0.0050 37 1 13.2089 -7.8526 -0.0035 38 1 11.9756 -5.7342 -0.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730869024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:06 Heat of formation + Delta-G solvation = -226.131741 kcal Electronic energy + Delta-G solvation = -26616.418379 eV Core-core repulsion = 22060.996902 eV Total energy + Delta-G solvation = -4555.421477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.13833 -48.13016 -40.99000 -40.74448 -39.51376 -37.81658 -37.05731 -34.29574 -32.03550 -31.95661 -31.32343 -28.99712 -27.43540 -25.08762 -23.93493 -23.24828 -22.03161 -21.43530 -20.49269 -20.00480 -19.03220 -18.84466 -17.82262 -17.41658 -17.08103 -16.70356 -16.68165 -16.10441 -15.41223 -15.33694 -14.97619 -14.78992 -14.77515 -14.55889 -14.39371 -14.35687 -14.30363 -14.00206 -13.72163 -13.42672 -13.01359 -12.84997 -12.70471 -12.47610 -12.11751 -11.67357 -11.28171 -11.21958 -11.17545 -10.73058 -10.33365 -10.18646 -9.99303 -9.84668 -9.76482 -9.34914 -9.12689 -8.64323 -6.14174 -4.14253 0.01560 0.71504 0.85419 1.23874 1.86434 2.33658 2.72794 3.14658 3.24007 3.32285 3.33913 3.70471 3.73717 3.90764 4.04020 4.17800 4.35806 4.46356 4.63937 4.79398 4.92843 5.09114 5.14943 5.21136 5.32136 5.37667 5.54636 5.56649 5.71889 5.76165 5.83635 6.20142 6.29263 6.31618 6.60382 6.90081 6.97464 7.08428 7.18749 7.64018 8.40947 8.89500 9.46517 10.98795 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.045772 B = 0.001926 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.578333 B =14535.259168 C =14956.442778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.103 4.103 11 C 0.064 3.936 12 O -0.328 6.328 13 C 0.459 3.541 14 O -0.440 6.440 15 C 0.466 3.534 16 F -0.162 7.162 17 F -0.162 7.162 18 O -0.285 6.285 19 C 0.141 3.859 20 C -0.208 4.208 21 C -0.025 4.025 22 C -0.221 4.221 23 C 0.387 3.613 24 O -0.463 6.463 25 C -0.023 4.023 26 C -0.142 4.142 27 H 0.265 0.735 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.686 -19.080 0.009 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.140 4.140 11 C -0.008 4.008 12 O -0.243 6.243 13 C 0.294 3.706 14 O -0.324 6.324 15 C 0.391 3.609 16 F -0.144 7.144 17 F -0.144 7.144 18 O -0.202 6.202 19 C 0.097 3.903 20 C -0.226 4.226 21 C -0.043 4.043 22 C -0.223 4.223 23 C 0.245 3.755 24 O -0.336 6.336 25 C -0.041 4.041 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.404 -18.454 0.013 29.804 hybrid contribution -0.090 0.843 -0.021 0.848 sum 23.313 -17.611 -0.008 29.217 Atomic orbital electron populations 1.69898 1.06287 1.27086 1.50453 1.25010 0.94766 0.99182 0.94362 0.86789 0.80348 0.83590 0.78629 1.20161 1.21200 1.18998 1.21013 0.88844 0.94766 1.51657 0.90700 1.19531 0.97731 0.90552 0.96875 1.21650 0.87639 1.01324 1.03434 1.23928 0.97775 0.75888 1.03169 1.86552 1.19488 1.36537 1.81764 1.21952 0.83774 0.88298 0.76590 1.90804 1.60515 1.39949 1.41088 1.20676 0.80335 0.85498 0.74420 1.93226 1.89514 1.81051 1.50576 1.93223 1.89546 1.80970 1.50634 1.86607 1.15505 1.30381 1.87706 1.19340 0.92146 0.83454 0.95352 1.21515 1.01471 0.91960 1.07673 1.21086 0.92741 0.98089 0.92401 1.20999 0.94633 0.96486 1.10138 1.23946 0.89157 0.92318 0.70032 1.90547 1.17431 1.90644 1.35011 1.21172 1.00835 0.90255 0.91882 1.20361 0.89843 1.00156 1.05700 0.92543 0.96101 0.96541 0.91047 0.91030 0.90382 0.90381 0.83947 0.83904 0.87621 0.83639 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.10 -1.87 5.53 -26.73 -0.15 -2.02 16 11 C 0.06 0.99 5.47 37.16 0.20 1.19 16 12 O -0.33 -4.76 10.22 -39.24 -0.40 -5.16 16 13 C 0.46 6.30 7.47 36.01 0.27 6.57 16 14 O -0.44 -6.81 16.25 -25.48 -0.41 -7.23 16 15 C 0.47 5.43 2.16 36.01 0.08 5.51 16 16 F -0.16 -1.79 15.30 2.25 0.03 -1.75 16 17 F -0.16 -1.79 15.25 2.25 0.03 -1.75 16 18 O -0.29 -3.27 9.59 -38.60 -0.37 -3.64 16 19 C 0.14 1.36 6.50 -38.95 -0.25 1.10 16 20 C -0.21 -1.69 8.21 -39.67 -0.33 -2.02 16 21 C -0.02 -0.15 9.77 -39.31 -0.38 -0.53 16 22 C -0.22 -1.44 5.87 -105.06 -0.62 -2.05 16 23 C 0.39 2.21 11.44 34.22 0.39 2.60 16 24 O -0.46 -4.47 17.16 5.55 0.10 -4.37 16 25 C -0.02 -0.17 9.57 -39.31 -0.38 -0.54 16 26 C -0.14 -1.15 9.95 -39.67 -0.39 -1.54 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 29 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.08 1.15 8.13 -51.93 -0.42 0.72 16 33 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.14 1.14 5.07 -52.49 -0.27 0.88 16 35 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.11 0.19 8.06 -52.49 -0.42 -0.24 16 37 H 0.15 0.92 7.64 -52.48 -0.40 0.52 16 38 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -32.13 347.54 -5.76 -37.89 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -3.98 Total: -4.36 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.10 Total: -4.92 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.23 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.09 Total: -20.40 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.07 Total: -3.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.13 -5.76 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730869024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.246 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds