Wall clock time and date at job start Tue Mar 31 2020 14:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47307 * 270.00867 * 3 2 1 5 5 H 1.48509 * 109.46583 * 30.00523 * 3 2 1 6 6 H 1.48501 * 109.47077 * 150.00260 * 3 2 1 7 7 C 1.37877 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47556 * 180.02562 * 10 9 7 12 12 O 1.45192 * 109.47508 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00088 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00047 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99932 * 180.02562 * 13 12 11 16 16 F 1.39900 * 109.47515 * 60.00084 * 15 13 12 17 17 F 1.39897 * 109.47274 * 299.99990 * 15 13 12 18 18 O 1.42905 * 109.47264 * 180.02562 * 15 13 12 19 19 C 1.35651 * 117.00043 * 179.97438 * 18 15 13 20 20 C 1.39087 * 119.88940 * 359.72889 * 19 18 15 21 21 C 1.37117 * 120.11837 * 179.71941 * 20 19 18 22 22 C 1.40038 * 119.87860 * 0.57369 * 21 20 19 23 23 C 1.46863 * 120.11121 * 179.68011 * 22 21 20 24 24 O 1.21291 * 120.00253 * 180.02562 * 23 22 21 25 25 C 1.40038 * 119.77736 * 359.70142 * 22 21 20 26 26 C 1.37120 * 119.88081 * 359.97438 * 25 22 21 27 27 H 0.96994 * 120.00093 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47409 * 60.00217 * 9 7 2 29 29 H 1.08996 * 109.47695 * 300.00088 * 9 7 2 30 30 H 1.08998 * 109.47380 * 59.99514 * 10 9 7 31 31 H 1.09009 * 109.46743 * 300.00179 * 10 9 7 32 32 H 1.09004 * 109.46701 * 59.99293 * 11 10 9 33 33 H 1.09001 * 109.46610 * 300.00192 * 11 10 9 34 34 H 1.08001 * 119.93864 * 359.97438 * 20 19 18 35 35 H 1.07999 * 120.06055 * 180.26911 * 21 20 19 36 36 H 1.07995 * 119.99929 * 0.02562 * 23 22 21 37 37 H 1.08004 * 120.05943 * 179.97438 * 25 22 21 38 38 H 1.07995 * 119.94082 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 8 6.0356 -4.0054 -0.0027 13 6 7.3663 -4.1813 -0.0033 14 8 8.1023 -3.2230 -0.0029 15 6 7.9423 -5.5739 -0.0044 16 9 7.5108 -6.2562 -1.1470 17 9 7.5116 -6.2576 1.1375 18 8 9.3694 -5.4991 -0.0042 19 6 10.0477 -6.6739 -0.0046 20 6 9.3499 -7.8770 0.0006 21 6 10.0307 -9.0673 -0.0056 22 6 11.4311 -9.0699 -0.0050 23 6 12.1654 -10.3418 -0.0045 24 8 13.3783 -10.3418 -0.0035 25 6 12.1289 -7.8558 -0.0044 26 6 11.4385 -6.6711 -0.0049 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1498 -0.8924 31 1 3.6586 -3.1509 0.8876 32 1 5.9149 -2.1233 0.8882 33 1 5.9149 -2.1219 -0.8918 34 1 8.2699 -7.8738 0.0053 35 1 9.4879 -10.0009 -0.0060 36 1 11.6254 -11.2771 -0.0050 37 1 13.2089 -7.8526 -0.0035 38 1 11.9756 -5.7342 -0.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730869024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:05 Heat of formation + Delta-G solvation = -244.319307 kcal Electronic energy + Delta-G solvation = -26617.207051 eV Core-core repulsion = 22060.996902 eV Total energy + Delta-G solvation = -4556.210149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.02344 -49.01225 -42.04217 -41.46811 -40.13842 -38.61364 -38.07340 -36.03346 -33.94479 -32.51799 -31.95872 -30.21598 -28.83896 -25.85573 -24.95303 -24.30157 -22.95264 -22.20612 -22.04594 -20.81989 -19.93949 -19.81745 -19.09996 -18.61207 -17.98657 -17.85312 -17.71617 -16.72906 -16.41274 -16.22962 -16.12479 -15.78162 -15.62397 -15.52570 -15.34652 -15.28430 -15.16003 -14.84483 -14.75371 -14.45212 -14.32576 -14.13966 -13.84614 -13.67742 -13.08706 -12.93829 -12.71882 -12.50439 -12.21865 -12.16055 -11.83117 -11.76582 -11.49590 -11.38224 -10.82612 -10.77207 -10.30295 -9.74034 -8.29708 -6.35126 -0.53991 -0.10633 0.15605 0.18235 1.36767 1.38167 1.39771 1.45903 1.50821 1.80317 2.36045 2.61229 2.64820 3.01484 3.05798 3.33047 3.47409 3.60820 3.82809 3.92232 3.93497 4.16822 4.25262 4.27686 4.46186 4.50111 4.69469 4.78312 4.83631 4.88704 4.96300 5.01025 5.19944 5.25484 5.41057 5.47301 5.61167 5.71721 5.86565 6.25687 6.48312 6.73226 7.29492 8.86715 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.045772 B = 0.001926 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.578333 B =14535.259168 C =14956.442778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.095 4.095 11 C 0.070 3.930 12 O -0.331 6.331 13 C 0.462 3.538 14 O -0.458 6.458 15 C 0.476 3.524 16 F -0.158 7.158 17 F -0.159 7.159 18 O -0.297 6.297 19 C 0.112 3.888 20 C -0.218 4.218 21 C -0.012 4.012 22 C -0.224 4.224 23 C 0.397 3.603 24 O -0.506 6.506 25 C -0.031 4.031 26 C -0.148 4.148 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.183 0.817 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.583 -19.987 0.002 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.133 4.133 11 C -0.002 4.002 12 O -0.246 6.246 13 C 0.298 3.702 14 O -0.342 6.342 15 C 0.400 3.600 16 F -0.140 7.140 17 F -0.140 7.140 18 O -0.214 6.214 19 C 0.069 3.931 20 C -0.237 4.237 21 C -0.030 4.030 22 C -0.226 4.226 23 C 0.258 3.742 24 O -0.382 6.382 25 C -0.049 4.049 26 C -0.167 4.167 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.201 0.799 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 25.313 -19.392 0.007 31.888 hybrid contribution -0.702 0.970 -0.021 1.197 sum 24.612 -18.422 -0.014 30.743 Atomic orbital electron populations 1.70060 1.08360 1.28245 1.52342 1.26012 0.95618 1.03569 0.94049 0.85671 0.79648 0.78150 0.79274 1.19134 1.21203 1.16536 1.21405 0.91781 0.93342 1.50793 0.94616 1.19459 0.94223 0.93395 0.97620 1.21389 0.89960 0.98783 1.03177 1.23673 0.95640 0.76524 1.04318 1.86515 1.20257 1.35944 1.81917 1.22237 0.83125 0.89119 0.75728 1.90793 1.60732 1.40831 1.41870 1.20270 0.80721 0.84274 0.74710 1.93234 1.89560 1.80774 1.50404 1.93231 1.89592 1.80693 1.50462 1.86575 1.15007 1.31653 1.88212 1.19649 0.92632 0.83426 0.97367 1.21666 1.01613 0.92288 1.08116 1.21467 0.92452 0.98818 0.90217 1.21318 0.95191 0.96798 1.09260 1.24612 0.88449 0.93325 0.67779 1.90551 1.19442 1.91051 1.37171 1.21346 1.01199 0.90565 0.91830 1.20481 0.89492 1.00856 1.05842 0.92444 0.95201 0.95321 0.91397 0.91422 0.89334 0.89257 0.83970 0.79950 0.82542 0.83269 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 42.55 27.47 68.60 1.88 44.44 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 7 C -0.54 -29.70 9.66 25.60 0.25 -29.46 16 8 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.10 -3.38 5.53 30.59 0.17 -3.21 16 11 C 0.07 2.03 5.47 71.98 0.39 2.43 16 12 O -0.33 -9.15 10.22 -51.37 -0.52 -9.68 16 13 C 0.46 12.16 7.47 71.24 0.53 12.70 16 14 O -0.46 -13.67 16.25 28.40 0.46 -13.21 16 15 C 0.48 10.64 2.16 71.24 0.15 10.80 16 16 F -0.16 -3.32 15.30 44.97 0.69 -2.63 16 17 F -0.16 -3.32 15.25 44.97 0.69 -2.63 16 18 O -0.30 -6.67 9.59 -70.59 -0.68 -7.35 16 19 C 0.11 2.08 6.50 22.68 0.15 2.23 16 20 C -0.22 -3.19 8.21 22.21 0.18 -3.01 16 21 C -0.01 -0.10 9.77 22.44 0.22 0.12 16 22 C -0.22 -2.39 5.87 -20.15 -0.12 -2.51 16 23 C 0.40 3.38 11.44 70.08 0.80 4.18 16 24 O -0.51 -9.00 17.16 -3.06 -0.05 -9.06 16 25 C -0.03 -0.42 9.57 22.44 0.21 -0.21 16 26 C -0.15 -2.33 9.95 22.21 0.22 -2.11 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 29 H 0.03 1.17 7.57 -2.39 -0.02 1.16 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 33 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 34 H 0.14 2.05 5.07 -2.91 -0.01 2.03 16 35 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 36 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.15 1.84 7.64 -2.91 -0.02 1.82 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -71.17 347.54 7.56 -63.61 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.05 Total: 2.29 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.75 Total: -7.63 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.79 Total: -39.29 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.37 Total: -5.26 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Total: -71.17 7.56 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730869024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.708 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds