Wall clock time and date at job start Tue Mar 31 2020 15:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.47312 * 2 1 4 4 C 1.33937 * 124.48466 * 89.72386 * 3 2 1 5 5 C 1.37348 * 115.13595 * 179.78620 * 4 3 2 6 6 C 1.37201 * 113.20725 * 0.48952 * 5 4 3 7 7 C 1.41389 * 125.47847 * 179.71298 * 6 5 4 8 8 C 1.35931 * 119.99915 * 131.47491 * 7 6 5 9 9 C 1.41240 * 119.99664 * 345.68162 * 8 7 6 10 10 O 1.21882 * 120.00339 * 353.49285 * 9 8 7 11 11 C 1.47745 * 119.99968 * 173.49157 * 9 8 7 12 12 C 1.39766 * 120.07060 * 359.72304 * 11 9 8 13 13 C 1.37658 * 119.92187 * 179.76961 * 12 11 9 14 14 C 1.39146 * 120.07750 * 0.50637 * 13 12 11 15 15 O 1.35567 * 119.92799 * 179.72213 * 14 13 12 16 16 C 1.34783 * 117.00096 * 174.06886 * 15 14 13 17 17 H 1.08004 * 120.00242 * 5.12452 * 16 15 14 18 18 C 1.38731 * 120.00352 * 185.12088 * 16 15 14 19 19 N 1.31503 * 120.00475 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99913 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47334 * 89.99837 * 20 18 16 22 22 H 1.48500 * 109.47072 * 209.99930 * 20 18 16 23 23 H 1.48507 * 109.47048 * 329.99797 * 20 18 16 24 24 C 1.39142 * 120.14546 * 359.74314 * 14 13 12 25 25 C 1.37660 * 120.07851 * 0.02562 * 24 14 13 26 26 S 1.70598 * 124.48631 * 270.02004 * 3 2 1 27 27 H 1.09001 * 109.46986 * 59.99892 * 1 2 3 28 28 H 1.08997 * 109.47578 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47508 * 300.00405 * 1 2 3 30 30 H 1.09001 * 109.46986 * 120.00108 * 2 1 3 31 31 H 1.09001 * 109.47508 * 239.99595 * 2 1 3 32 32 H 1.08002 * 122.42898 * 359.97438 * 4 3 2 33 33 H 1.08006 * 123.39256 * 180.20446 * 5 4 3 34 34 H 1.07996 * 120.00381 * 311.47659 * 7 6 5 35 35 H 1.07994 * 120.00213 * 165.67858 * 8 7 6 36 36 H 1.08000 * 120.04108 * 359.97438 * 12 11 9 37 37 H 1.08007 * 119.96294 * 180.25077 * 13 12 11 38 38 H 0.96996 * 120.00512 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.96576 * 179.97438 * 24 14 13 40 40 H 1.07994 * 120.04602 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1376 1.1040 5 6 2.7373 3.4134 0.8809 6 6 2.8464 3.7234 -0.4511 7 6 3.2839 4.9629 -0.9721 8 6 4.2301 4.9942 -1.9475 9 6 4.9911 3.8385 -2.2304 10 8 4.8846 2.8507 -1.5244 11 6 5.9163 3.8270 -3.3823 12 6 6.0354 4.9569 -4.1963 13 6 6.9019 4.9444 -5.2659 14 6 7.6510 3.8051 -5.5432 15 8 8.4992 3.7942 -6.6007 16 6 9.2851 2.7085 -6.7436 17 1 9.1637 1.8631 -6.0825 18 6 10.2499 2.6768 -7.7400 19 7 11.0170 1.6178 -7.8791 20 14 10.4604 4.1392 -8.8831 21 1 11.4477 5.0839 -8.3017 22 1 10.9452 3.6681 -10.2053 23 1 9.1555 4.8281 -9.0511 24 6 7.5310 2.6767 -4.7379 25 6 6.6699 2.6840 -3.6639 26 16 2.3539 2.3317 -1.4062 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1340 1.7401 2.0975 33 1 2.9816 4.1045 1.6741 34 1 2.8665 5.8848 -0.5950 35 1 4.3998 5.9027 -2.5062 36 1 5.4507 5.8398 -3.9845 37 1 6.9974 5.8186 -5.8930 38 1 11.6913 1.5955 -8.5760 39 1 8.1135 1.7939 -4.9561 40 1 6.5769 1.8078 -3.0395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731157115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:45 Heat of formation + Delta-G solvation = 15.532799 kcal Electronic energy + Delta-G solvation = -23620.233174 eV Core-core repulsion = 20072.273459 eV Total energy + Delta-G solvation = -3547.959715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 5.12 seconds Orbital eigenvalues (eV) -39.86505 -38.95010 -38.01584 -36.39112 -34.68316 -32.84609 -32.59591 -30.45713 -30.01843 -27.99434 -25.81374 -25.18669 -23.43429 -22.40778 -22.07379 -21.20228 -19.69192 -18.74727 -17.96210 -17.57219 -16.57452 -16.44529 -15.55006 -15.01975 -14.66291 -14.46556 -14.26274 -14.14725 -13.98735 -13.92241 -13.57314 -13.47683 -13.04887 -12.94645 -12.55444 -12.43325 -12.36928 -12.26293 -11.90314 -11.74019 -11.62141 -11.39668 -11.24195 -10.87631 -10.80049 -10.71493 -10.27310 -9.73798 -9.55918 -9.33256 -9.03946 -8.43250 -8.34964 -7.85405 -7.50730 -6.59865 -4.24443 0.22022 1.32916 1.63959 1.96502 2.07302 2.21532 2.76097 3.11552 3.15770 3.29008 3.49537 4.09091 4.48188 4.56959 4.59645 4.67428 4.83516 4.88374 4.95204 5.06607 5.23574 5.28220 5.39039 5.50295 5.53914 5.55965 5.61641 5.67870 5.69080 5.87341 5.92863 5.99363 6.07091 6.16048 6.29787 6.36530 6.39866 6.53017 6.66264 6.86858 7.02258 7.17546 7.43015 7.64458 7.84743 8.05856 8.73260 9.33112 10.46371 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.002422 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.543145 B =11557.472545 C =12302.388600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.217 4.217 4 C -0.150 4.150 5 C -0.109 4.109 6 C -0.186 4.186 7 C -0.001 4.001 8 C -0.220 4.220 9 C 0.411 3.589 10 O -0.466 6.466 11 C -0.257 4.257 12 C -0.033 4.033 13 C -0.205 4.205 14 C 0.181 3.819 15 O -0.201 6.201 16 C -0.392 4.392 17 H 0.111 0.889 18 C 0.066 3.934 19 N -0.866 5.866 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.237 4.237 25 C -0.012 4.012 26 S 0.234 5.766 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.283 0.717 39 H 0.137 0.863 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 4.031 13.960 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.336 4.336 4 C -0.182 4.182 5 C -0.140 4.140 6 C -0.304 4.304 7 C -0.021 4.021 8 C -0.242 4.242 9 C 0.296 3.704 10 O -0.348 6.348 11 C -0.259 4.259 12 C -0.051 4.051 13 C -0.224 4.224 14 C 0.126 3.874 15 O -0.104 6.104 16 C -0.467 4.467 17 H 0.128 0.872 18 C -0.139 4.139 19 N -0.502 5.502 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.182 1.182 24 C -0.256 4.256 25 C -0.030 4.030 26 S 0.506 5.494 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.587 3.225 12.425 22.589 hybrid contribution 0.641 0.820 1.034 1.467 sum -17.946 4.045 13.459 22.794 Atomic orbital electron populations 1.21792 0.94529 1.01831 1.02305 1.20078 0.95935 0.90041 1.03227 1.24123 1.09122 1.01872 0.98507 1.19709 1.05149 0.94498 0.98806 1.20604 1.01643 0.97118 0.94605 1.22368 1.11601 0.99296 0.97127 1.20821 0.93585 0.95153 0.92549 1.22898 0.99055 1.01801 1.00491 1.19017 0.81403 0.86420 0.83559 1.90747 1.61399 1.35618 1.47033 1.19872 1.07082 0.97025 1.01872 1.20846 0.95134 0.96442 0.92728 1.20156 1.02751 0.97647 1.01886 1.19379 0.89095 0.93135 0.85788 1.83500 1.45073 1.42641 1.39154 1.20894 1.13204 0.93845 1.18755 0.87157 1.24547 0.94120 0.98074 0.97165 1.69612 1.19639 1.28128 1.32823 0.86158 0.79799 0.81564 0.79308 1.19617 1.20505 1.18173 1.21243 1.05107 1.00205 0.99019 1.20953 0.91401 0.96433 0.94236 1.82986 1.56541 1.02841 1.07004 0.92548 0.92153 0.92394 0.90264 0.90874 0.85151 0.84486 0.84527 0.84466 0.86123 0.86001 0.90637 0.84509 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.76 16 2 C -0.05 -0.50 6.36 -27.88 -0.18 -0.68 16 3 C -0.22 -2.55 5.53 -35.82 -0.20 -2.75 16 4 C -0.15 -1.72 9.99 -41.42 -0.41 -2.13 16 5 C -0.11 -1.28 10.25 -40.28 -0.41 -1.69 16 6 C -0.19 -2.35 4.32 -38.76 -0.17 -2.52 16 7 C 0.00 -0.01 9.86 -39.21 -0.39 -0.40 16 8 C -0.22 -2.70 9.32 -39.27 -0.37 -3.07 16 9 C 0.41 6.54 6.43 -34.56 -0.22 6.32 16 10 O -0.47 -8.30 12.35 5.03 0.06 -8.24 16 11 C -0.26 -4.47 5.88 -104.87 -0.62 -5.09 16 12 C -0.03 -0.53 9.42 -39.22 -0.37 -0.90 16 13 C -0.21 -3.81 9.97 -39.46 -0.39 -4.21 16 14 C 0.18 4.01 6.66 -38.91 -0.26 3.75 16 15 O -0.20 -5.06 8.57 0.74 0.01 -5.05 16 16 C -0.39 -10.61 9.94 30.91 0.31 -10.31 16 17 H 0.11 3.06 5.42 -52.48 -0.28 2.78 16 18 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 19 N -0.87 -24.09 13.96 55.48 0.77 -23.32 16 20 Si 0.91 20.66 28.62 -169.99 -4.86 15.79 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.26 -5.87 7.11 56.52 0.40 -5.46 16 24 C -0.24 -5.05 9.15 -39.46 -0.36 -5.41 16 25 C -0.01 -0.22 9.59 -39.22 -0.38 -0.60 16 26 S 0.23 3.04 20.13 -107.50 -2.16 0.88 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.14 1.32 6.25 -52.49 -0.33 0.99 16 36 H 0.12 1.46 6.21 -52.49 -0.33 1.14 16 37 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.14 3.04 5.62 -52.49 -0.30 2.75 16 40 H 0.12 2.21 7.64 -52.49 -0.40 1.81 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -29.87 355.41 -9.55 -39.42 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.57 Total: 3.90 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -4.14 Total: -28.74 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.77 Total: -23.32 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.86 Total: 15.79 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.16 Total: 0.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.87 -9.55 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731157115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.948 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds