Wall clock time and date at job start Tue Mar 31 2020 15:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.47312 * 2 1 4 4 C 1.33937 * 124.48466 * 89.72386 * 3 2 1 5 5 C 1.37348 * 115.13595 * 179.78620 * 4 3 2 6 6 C 1.37201 * 113.20725 * 0.48952 * 5 4 3 7 7 C 1.41389 * 125.47847 * 179.71298 * 6 5 4 8 8 C 1.35931 * 119.99915 * 131.47491 * 7 6 5 9 9 C 1.41240 * 119.99664 * 345.68162 * 8 7 6 10 10 O 1.21882 * 120.00339 * 353.49285 * 9 8 7 11 11 C 1.47745 * 119.99968 * 173.49157 * 9 8 7 12 12 C 1.39766 * 120.07060 * 359.72304 * 11 9 8 13 13 C 1.37658 * 119.92187 * 179.76961 * 12 11 9 14 14 C 1.39146 * 120.07750 * 0.50637 * 13 12 11 15 15 O 1.35567 * 119.92799 * 179.72213 * 14 13 12 16 16 C 1.34783 * 117.00096 * 174.06886 * 15 14 13 17 17 H 1.08004 * 120.00242 * 5.12452 * 16 15 14 18 18 C 1.38731 * 120.00352 * 185.12088 * 16 15 14 19 19 N 1.31503 * 120.00475 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99913 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47334 * 89.99837 * 20 18 16 22 22 H 1.48500 * 109.47072 * 209.99930 * 20 18 16 23 23 H 1.48507 * 109.47048 * 329.99797 * 20 18 16 24 24 C 1.39142 * 120.14546 * 359.74314 * 14 13 12 25 25 C 1.37660 * 120.07851 * 0.02562 * 24 14 13 26 26 S 1.70598 * 124.48631 * 270.02004 * 3 2 1 27 27 H 1.09001 * 109.46986 * 59.99892 * 1 2 3 28 28 H 1.08997 * 109.47578 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47508 * 300.00405 * 1 2 3 30 30 H 1.09001 * 109.46986 * 120.00108 * 2 1 3 31 31 H 1.09001 * 109.47508 * 239.99595 * 2 1 3 32 32 H 1.08002 * 122.42898 * 359.97438 * 4 3 2 33 33 H 1.08006 * 123.39256 * 180.20446 * 5 4 3 34 34 H 1.07996 * 120.00381 * 311.47659 * 7 6 5 35 35 H 1.07994 * 120.00213 * 165.67858 * 8 7 6 36 36 H 1.08000 * 120.04108 * 359.97438 * 12 11 9 37 37 H 1.08007 * 119.96294 * 180.25077 * 13 12 11 38 38 H 0.96996 * 120.00512 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.96576 * 179.97438 * 24 14 13 40 40 H 1.07994 * 120.04602 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1376 1.1040 5 6 2.7373 3.4134 0.8809 6 6 2.8464 3.7234 -0.4511 7 6 3.2839 4.9629 -0.9721 8 6 4.2301 4.9942 -1.9475 9 6 4.9911 3.8385 -2.2304 10 8 4.8846 2.8507 -1.5244 11 6 5.9163 3.8270 -3.3823 12 6 6.0354 4.9569 -4.1963 13 6 6.9019 4.9444 -5.2659 14 6 7.6510 3.8051 -5.5432 15 8 8.4992 3.7942 -6.6007 16 6 9.2851 2.7085 -6.7436 17 1 9.1637 1.8631 -6.0825 18 6 10.2499 2.6768 -7.7400 19 7 11.0170 1.6178 -7.8791 20 14 10.4604 4.1392 -8.8831 21 1 11.4477 5.0839 -8.3017 22 1 10.9452 3.6681 -10.2053 23 1 9.1555 4.8281 -9.0511 24 6 7.5310 2.6767 -4.7379 25 6 6.6699 2.6840 -3.6639 26 16 2.3539 2.3317 -1.4062 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1340 1.7401 2.0975 33 1 2.9816 4.1045 1.6741 34 1 2.8665 5.8848 -0.5950 35 1 4.3998 5.9027 -2.5062 36 1 5.4507 5.8398 -3.9845 37 1 6.9974 5.8186 -5.8930 38 1 11.6913 1.5955 -8.5760 39 1 8.1135 1.7939 -4.9561 40 1 6.5769 1.8078 -3.0395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731157115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:39 Heat of formation + Delta-G solvation = 1.118960 kcal Electronic energy + Delta-G solvation = -23620.858205 eV Core-core repulsion = 20072.273459 eV Total energy + Delta-G solvation = -3548.584746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.28980 -40.42807 -38.97361 -37.95315 -35.58083 -34.55428 -33.71727 -31.97015 -31.49682 -28.98600 -27.53405 -26.29348 -24.60093 -23.65325 -23.20296 -22.50810 -20.76582 -20.10295 -19.52890 -19.15435 -17.78132 -17.53851 -16.72491 -16.51641 -15.95761 -15.89039 -15.64769 -15.45490 -15.33937 -15.00043 -14.76051 -14.54188 -14.48322 -14.10412 -14.10247 -13.82246 -13.39973 -13.26060 -13.15106 -13.05779 -12.79235 -12.53424 -12.43037 -12.34888 -12.00879 -11.96432 -11.59684 -11.38084 -10.96779 -10.71237 -10.50370 -9.95577 -9.38939 -9.08101 -8.81990 -8.56365 -6.30046 -0.77755 0.11574 0.51447 0.60852 0.97599 1.24171 1.32037 1.36241 1.52130 1.82800 2.24657 2.25425 2.80157 2.95080 3.14100 3.44081 3.82420 3.93162 3.98808 4.10006 4.14890 4.38084 4.38195 4.42748 4.49363 4.56272 4.63473 4.66719 4.82939 4.84655 4.92368 4.97842 5.03303 5.12112 5.21206 5.28938 5.29496 5.38570 5.39635 5.48016 5.61159 5.67480 5.71851 5.79344 6.09469 6.75938 6.80811 7.44689 8.54532 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.002422 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.543145 B =11557.472545 C =12302.388600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.218 4.218 4 C -0.161 4.161 5 C -0.108 4.108 6 C -0.207 4.207 7 C 0.027 3.973 8 C -0.242 4.242 9 C 0.412 3.588 10 O -0.489 6.489 11 C -0.243 4.243 12 C -0.014 4.014 13 C -0.198 4.198 14 C 0.151 3.849 15 O -0.227 6.227 16 C -0.407 4.407 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.251 4.251 25 C -0.025 4.025 26 S 0.185 5.815 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.148 0.852 38 H 0.288 0.712 39 H 0.111 0.889 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 7.453 16.022 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.337 4.337 4 C -0.191 4.191 5 C -0.138 4.138 6 C -0.324 4.324 7 C 0.007 3.993 8 C -0.264 4.264 9 C 0.298 3.702 10 O -0.372 6.372 11 C -0.245 4.245 12 C -0.032 4.032 13 C -0.217 4.217 14 C 0.099 3.901 15 O -0.133 6.133 16 C -0.483 4.483 17 H 0.098 0.902 18 C -0.187 4.187 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.270 4.270 25 C -0.043 4.043 26 S 0.456 5.544 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.180 0.820 34 H 0.198 0.802 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.468 6.652 14.527 26.761 hybrid contribution 1.125 -0.295 0.880 1.459 sum -20.343 6.356 15.407 26.298 Atomic orbital electron populations 1.21756 0.93116 1.02834 1.02229 1.20185 0.97157 0.88866 1.03408 1.24421 1.08741 1.02685 0.97868 1.20052 1.04802 0.94688 0.99603 1.20983 1.00372 0.97561 0.94911 1.22688 1.12695 0.99667 0.97391 1.21323 0.91631 0.95928 0.90431 1.22873 0.99950 1.01146 1.02438 1.19332 0.81115 0.87459 0.82315 1.90761 1.61929 1.36957 1.47555 1.20401 1.05541 0.96382 1.02179 1.21400 0.93843 0.97514 0.90445 1.20596 1.01652 0.96933 1.02539 1.19954 0.89574 0.94666 0.85874 1.83461 1.46732 1.41827 1.41231 1.20752 1.14491 0.94102 1.18972 0.90167 1.25386 0.93711 1.00896 0.98685 1.69702 1.21170 1.30257 1.34440 0.85172 0.79673 0.78066 0.77562 1.18799 1.19196 1.18078 1.21181 1.05867 0.99728 1.00260 1.21033 0.91776 0.97772 0.93752 1.83142 1.57858 1.04548 1.08827 0.93139 0.90650 0.91905 0.89182 0.91567 0.83181 0.82048 0.80158 0.81004 0.80450 0.83466 0.90251 0.87136 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 71.98 0.71 -1.24 16 2 C -0.06 -1.00 6.36 29.85 0.19 -0.81 16 3 C -0.22 -4.82 5.53 24.71 0.14 -4.68 16 4 C -0.16 -3.27 9.99 21.08 0.21 -3.06 16 5 C -0.11 -2.16 10.25 21.82 0.22 -1.94 16 6 C -0.21 -4.57 4.32 22.80 0.10 -4.47 16 7 C 0.03 0.45 9.86 22.51 0.22 0.67 16 8 C -0.24 -4.76 9.32 22.47 0.21 -4.55 16 9 C 0.41 11.97 6.43 25.52 0.16 12.14 16 10 O -0.49 -16.74 12.35 -4.93 -0.06 -16.80 16 11 C -0.24 -7.97 5.88 -20.02 -0.12 -8.09 16 12 C -0.01 -0.40 9.42 22.50 0.21 -0.19 16 13 C -0.20 -6.91 9.97 22.35 0.22 -6.69 16 14 C 0.15 6.83 6.66 22.71 0.15 6.98 16 15 O -0.23 -11.88 8.57 -20.25 -0.17 -12.05 16 16 C -0.41 -23.60 9.94 67.94 0.68 -22.92 16 17 H 0.08 4.94 5.42 -2.91 -0.02 4.92 16 18 C 0.01 0.74 5.49 84.86 0.47 1.20 16 19 N -0.92 -53.97 13.96 21.63 0.30 -53.67 16 20 Si 0.97 43.74 28.62 68.60 1.96 45.71 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 C -0.25 -11.37 9.15 22.35 0.20 -11.17 16 25 C -0.02 -0.98 9.59 22.50 0.22 -0.76 16 26 S 0.18 4.59 20.13 -56.49 -1.14 3.45 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.17 2.09 6.25 -2.91 -0.02 2.07 16 36 H 0.18 3.03 6.21 -2.91 -0.02 3.01 16 37 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.29 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.11 5.51 5.62 -2.91 -0.02 5.50 16 40 H 0.12 4.60 7.64 -2.91 -0.02 4.58 16 Total: -1.00 -70.69 355.41 6.16 -64.53 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.07 Total: 18.41 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.20 Total: -49.58 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.30 Total: -53.67 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.23 Total: -28.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.96 Total: 45.71 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.14 Total: 3.45 kcal Total: -70.69 6.16 -64.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731157115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.650 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds