Wall clock time and date at job start Tue Mar 31 2020 15:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35244 * 126.69471 * 2 1 4 4 C 1.42024 * 103.95806 * 180.02562 * 3 2 1 5 5 N 1.39504 * 126.89564 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99981 * 0.02562 * 5 4 3 7 7 O 1.21276 * 120.00228 * 359.71864 * 6 5 4 8 8 C 1.50702 * 119.99896 * 179.72001 * 6 5 4 9 9 S 1.81401 * 109.46789 * 179.97438 * 8 6 5 10 10 C 1.81406 * 102.99853 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47102 * 180.02562 * 10 9 8 12 12 O 1.20829 * 120.00105 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00000 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00194 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47015 * 29.99296 * 14 13 11 16 16 C 1.53004 * 109.46652 * 269.99849 * 14 13 11 17 17 C 1.50690 * 109.47316 * 150.00019 * 14 13 11 18 18 H 1.07998 * 120.00395 * 34.99573 * 17 14 13 19 19 C 1.37883 * 120.00015 * 214.99682 * 17 14 13 20 20 N 1.31515 * 119.99902 * 184.91738 * 19 17 14 21 21 Si 1.86803 * 119.99934 * 4.91102 * 19 17 14 22 22 H 1.48502 * 109.46688 * 84.83604 * 21 19 17 23 23 H 1.48495 * 109.47129 * 204.83403 * 21 19 17 24 24 H 1.48499 * 109.47105 * 324.83939 * 21 19 17 25 25 N 1.30714 * 106.21022 * 0.22711 * 4 3 2 26 26 O 1.20912 * 111.47652 * 359.59825 * 25 4 3 27 27 H 1.08995 * 109.46948 * 90.00136 * 1 2 3 28 28 H 1.09003 * 109.47057 * 209.99522 * 1 2 3 29 29 H 1.08996 * 109.46849 * 329.99755 * 1 2 3 30 30 H 1.08001 * 128.02341 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99915 * 179.72202 * 5 4 3 32 32 H 1.08990 * 109.47396 * 299.99847 * 8 6 5 33 33 H 1.08997 * 109.46779 * 60.00343 * 8 6 5 34 34 H 1.09003 * 109.46938 * 300.00106 * 10 9 8 35 35 H 1.08998 * 109.46726 * 60.00269 * 10 9 8 36 36 H 1.09006 * 109.47010 * 175.02996 * 16 14 13 37 37 H 1.08994 * 109.47360 * 295.03198 * 16 14 13 38 38 H 1.08994 * 109.46950 * 55.03409 * 16 14 13 39 39 H 0.97000 * 119.99804 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6250 0.5355 -0.0006 5 7 4.8287 1.2408 -0.0014 6 6 4.8200 2.5885 -0.0010 7 8 3.7659 3.1882 -0.0052 8 6 6.1203 3.3503 0.0045 9 16 5.7773 5.1316 0.0029 10 6 7.4358 5.8665 0.0092 11 6 7.3195 7.3690 0.0091 12 8 6.2296 7.8906 0.0056 13 8 8.4267 8.1279 0.0129 14 6 8.2390 9.5677 0.0131 15 1 7.3079 9.8127 0.5241 16 6 8.1776 10.0741 -1.4294 17 6 9.3920 10.2244 0.7273 18 1 10.3849 9.8070 0.6478 19 6 9.1794 11.3584 1.4823 20 7 10.1987 11.9869 2.0261 21 14 7.4438 12.0021 1.7326 22 1 6.8124 11.2921 2.8738 23 1 7.4925 13.4579 2.0212 24 1 6.6467 11.7678 0.5017 25 7 3.4765 -0.7631 -0.0059 26 8 2.3083 -1.0751 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.0305 2.1262 -0.0004 31 1 5.6718 0.7612 0.0023 32 1 6.6898 3.0905 0.8967 33 1 6.6971 3.0909 -0.8832 34 1 7.9727 5.5440 0.9014 35 1 7.9796 5.5437 -0.8786 36 1 7.9489 11.1399 -1.4309 37 1 9.1397 9.9083 -1.9141 38 1 7.4003 9.5350 -1.9709 39 1 10.0491 12.7845 2.5576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:19 Heat of formation + Delta-G solvation = -48.606455 kcal Electronic energy + Delta-G solvation = -23990.166011 eV Core-core repulsion = 20028.575746 eV Total energy + Delta-G solvation = -3961.590265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.24194 -40.47897 -39.69646 -36.07139 -35.95780 -34.03518 -33.17000 -32.74208 -31.10278 -30.32396 -29.57690 -28.20761 -25.46030 -24.19804 -22.36110 -21.87000 -21.17579 -19.83023 -18.06672 -17.89039 -17.83588 -17.37147 -17.07270 -16.80738 -16.25275 -16.21462 -15.75600 -15.39193 -14.64381 -14.19501 -14.04191 -13.93121 -13.84946 -13.66697 -13.26186 -13.04051 -12.86678 -12.85277 -12.49551 -12.41203 -12.09716 -11.68823 -11.63068 -11.15686 -11.03058 -10.76008 -10.61629 -10.15018 -10.13023 -9.84911 -9.78919 -9.57691 -9.29898 -9.20455 -8.77395 -7.80763 -6.33309 -4.37800 0.92052 0.99654 1.54579 2.10996 2.20492 2.35961 2.70841 2.75794 3.17937 3.26837 3.32794 3.41931 3.77219 4.09390 4.22074 4.47624 4.48139 4.64945 4.71541 4.84182 4.93575 4.95847 4.96854 5.14010 5.14648 5.39119 5.43369 5.55114 5.95080 6.11229 6.36850 6.44225 6.52634 6.62232 7.08645 7.26872 7.39156 7.43951 7.90287 8.13819 8.50176 8.75864 9.25287 10.77614 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.001929 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.953529 B =14511.229101 C =14929.958077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 C -0.227 4.227 4 C 0.249 3.751 5 N -0.631 5.631 6 C 0.544 3.456 7 O -0.485 6.485 8 C -0.150 4.150 9 S -0.098 6.098 10 C -0.122 4.122 11 C 0.469 3.531 12 O -0.505 6.505 13 O -0.343 6.343 14 C 0.182 3.818 15 H 0.049 0.951 16 C -0.153 4.153 17 C -0.519 4.519 18 H 0.086 0.914 19 C 0.083 3.917 20 N -0.879 5.879 21 Si 0.870 3.130 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.260 1.260 25 N -0.391 5.391 26 O 0.096 5.904 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.421 0.579 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -25.434 -4.723 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.250 4.250 4 C 0.000 4.000 5 N -0.284 5.284 6 C 0.329 3.671 7 O -0.356 6.356 8 C -0.301 4.301 9 S 0.127 5.873 10 C -0.271 4.271 11 C 0.310 3.690 12 O -0.395 6.395 13 O -0.259 6.259 14 C 0.129 3.871 15 H 0.067 0.933 16 C -0.211 4.211 17 C -0.556 4.556 18 H 0.104 0.896 19 C -0.122 4.122 20 N -0.515 5.515 21 Si 0.695 3.305 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.184 1.184 25 N -0.107 5.107 26 O 0.035 5.965 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.209 0.791 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.665 -25.076 -4.624 29.415 hybrid contribution 0.751 0.312 0.253 0.852 sum -13.914 -24.764 -4.371 28.739 Atomic orbital electron populations 1.20371 0.83588 1.04870 1.04339 1.24470 0.96565 0.85703 1.01834 1.22762 0.89207 1.02311 1.10682 1.20489 0.88376 0.88889 1.02279 1.42410 1.06342 1.06158 1.73442 1.19822 0.91026 0.80575 0.75640 1.90737 1.32143 1.67416 1.45298 1.23515 0.98538 0.99851 1.08182 1.88292 1.06051 0.94897 1.98094 1.23293 1.00669 0.94691 1.08448 1.22261 0.84178 0.88963 0.73641 1.90654 1.28588 1.74543 1.45679 1.86668 1.33877 1.23905 1.81487 1.21084 0.99048 0.72097 0.94855 0.93327 1.22239 1.00374 1.00945 0.97529 1.20779 0.94478 1.09746 1.30638 0.89615 1.24924 0.97304 0.96165 0.93846 1.69850 1.30513 1.18805 1.32370 0.86954 0.84882 0.78532 0.80094 1.19455 1.20625 1.18427 1.74038 0.97753 1.13023 1.25866 1.84793 1.10374 1.32396 1.68897 0.89179 0.89682 0.88723 0.79131 0.74233 0.86139 0.86196 0.86072 0.86229 0.91837 0.92333 0.95018 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.02 -0.18 7.48 -35.37 -0.26 -0.44 16 3 C -0.23 -2.28 9.79 -39.20 -0.38 -2.66 16 4 C 0.25 2.60 8.18 -154.83 -1.27 1.33 16 5 N -0.63 -5.16 5.42 -11.44 -0.06 -5.22 16 6 C 0.54 5.32 7.81 -10.99 -0.09 5.23 16 7 O -0.49 -6.52 13.15 5.56 0.07 -6.45 16 8 C -0.15 -1.14 6.42 36.01 0.23 -0.91 16 9 S -0.10 -1.31 20.01 -107.50 -2.15 -3.46 16 10 C -0.12 -1.58 6.54 36.01 0.24 -1.35 16 11 C 0.47 9.09 7.95 36.01 0.29 9.37 16 12 O -0.51 -11.34 15.08 -18.75 -0.28 -11.63 16 13 O -0.34 -7.61 9.86 -39.25 -0.39 -8.00 16 14 C 0.18 4.49 2.22 -27.89 -0.06 4.43 16 15 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 16 C -0.15 -3.35 9.53 37.16 0.35 -3.00 16 17 C -0.52 -14.48 9.25 -34.44 -0.32 -14.80 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 20 N -0.88 -25.79 13.96 55.43 0.77 -25.01 16 21 Si 0.87 21.31 26.99 -169.99 -4.59 16.72 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.24 6.82 56.52 0.39 -5.85 16 25 N -0.39 -4.20 12.10 31.19 0.38 -3.82 16 26 O 0.10 0.92 11.19 17.06 0.19 1.11 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.19 2.06 6.22 -52.49 -0.33 1.73 16 31 H 0.42 2.07 8.82 -40.82 -0.36 1.71 16 32 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -35.72 357.01 -6.38 -42.10 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.71 Total: -1.26 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.99 Total: -0.47 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 1.09 Total: -34.06 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.41 Total: -24.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.59 Total: 16.72 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.15 Total: -3.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.72 -6.38 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.503 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds