Wall clock time and date at job start Tue Mar 31 2020 15:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35244 * 126.69471 * 2 1 4 4 C 1.42024 * 103.95806 * 180.02562 * 3 2 1 5 5 N 1.39504 * 126.89564 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99981 * 0.02562 * 5 4 3 7 7 O 1.21276 * 120.00228 * 359.71864 * 6 5 4 8 8 C 1.50702 * 119.99896 * 179.72001 * 6 5 4 9 9 S 1.81401 * 109.46789 * 179.97438 * 8 6 5 10 10 C 1.81406 * 102.99853 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47102 * 180.02562 * 10 9 8 12 12 O 1.20829 * 120.00105 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00000 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00194 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47015 * 29.99296 * 14 13 11 16 16 C 1.53004 * 109.46652 * 269.99849 * 14 13 11 17 17 C 1.50690 * 109.47316 * 150.00019 * 14 13 11 18 18 H 1.07998 * 120.00395 * 34.99573 * 17 14 13 19 19 C 1.37883 * 120.00015 * 214.99682 * 17 14 13 20 20 N 1.31515 * 119.99902 * 184.91738 * 19 17 14 21 21 Si 1.86803 * 119.99934 * 4.91102 * 19 17 14 22 22 H 1.48502 * 109.46688 * 84.83604 * 21 19 17 23 23 H 1.48495 * 109.47129 * 204.83403 * 21 19 17 24 24 H 1.48499 * 109.47105 * 324.83939 * 21 19 17 25 25 N 1.30714 * 106.21022 * 0.22711 * 4 3 2 26 26 O 1.20912 * 111.47652 * 359.59825 * 25 4 3 27 27 H 1.08995 * 109.46948 * 90.00136 * 1 2 3 28 28 H 1.09003 * 109.47057 * 209.99522 * 1 2 3 29 29 H 1.08996 * 109.46849 * 329.99755 * 1 2 3 30 30 H 1.08001 * 128.02341 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99915 * 179.72202 * 5 4 3 32 32 H 1.08990 * 109.47396 * 299.99847 * 8 6 5 33 33 H 1.08997 * 109.46779 * 60.00343 * 8 6 5 34 34 H 1.09003 * 109.46938 * 300.00106 * 10 9 8 35 35 H 1.08998 * 109.46726 * 60.00269 * 10 9 8 36 36 H 1.09006 * 109.47010 * 175.02996 * 16 14 13 37 37 H 1.08994 * 109.47360 * 295.03198 * 16 14 13 38 38 H 1.08994 * 109.46950 * 55.03409 * 16 14 13 39 39 H 0.97000 * 119.99804 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6250 0.5355 -0.0006 5 7 4.8287 1.2408 -0.0014 6 6 4.8200 2.5885 -0.0010 7 8 3.7659 3.1882 -0.0052 8 6 6.1203 3.3503 0.0045 9 16 5.7773 5.1316 0.0029 10 6 7.4358 5.8665 0.0092 11 6 7.3195 7.3690 0.0091 12 8 6.2296 7.8906 0.0056 13 8 8.4267 8.1279 0.0129 14 6 8.2390 9.5677 0.0131 15 1 7.3079 9.8127 0.5241 16 6 8.1776 10.0741 -1.4294 17 6 9.3920 10.2244 0.7273 18 1 10.3849 9.8070 0.6478 19 6 9.1794 11.3584 1.4823 20 7 10.1987 11.9869 2.0261 21 14 7.4438 12.0021 1.7326 22 1 6.8124 11.2921 2.8738 23 1 7.4925 13.4579 2.0212 24 1 6.6467 11.7678 0.5017 25 7 3.4765 -0.7631 -0.0059 26 8 2.3083 -1.0751 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.0305 2.1262 -0.0004 31 1 5.6718 0.7612 0.0023 32 1 6.6898 3.0905 0.8967 33 1 6.6971 3.0909 -0.8832 34 1 7.9727 5.5440 0.9014 35 1 7.9796 5.5437 -0.8786 36 1 7.9489 11.1399 -1.4309 37 1 9.1397 9.9083 -1.9141 38 1 7.4003 9.5350 -1.9709 39 1 10.0491 12.7845 2.5576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:18 Heat of formation + Delta-G solvation = -72.469392 kcal Electronic energy + Delta-G solvation = -23991.200786 eV Core-core repulsion = 20028.575746 eV Total energy + Delta-G solvation = -3962.625039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.96057 -41.37922 -41.19913 -37.70374 -36.81472 -35.20743 -34.63016 -33.45639 -32.85542 -31.28265 -30.65068 -28.69522 -27.47715 -24.93808 -23.82955 -22.81927 -21.91670 -21.52833 -19.52788 -18.79250 -18.58673 -18.55481 -18.37013 -17.86359 -17.46073 -17.30445 -16.89931 -16.78286 -16.00223 -15.38696 -14.98963 -14.77855 -14.74329 -14.48572 -14.39686 -14.25451 -14.03667 -13.93723 -13.82322 -13.34210 -13.33025 -13.05117 -12.91761 -12.86766 -12.60390 -12.27884 -11.99835 -11.60572 -11.44580 -11.39016 -11.20830 -11.00165 -10.89365 -10.44568 -10.02495 -8.78852 -8.48719 -6.58114 0.01666 0.30381 0.83447 1.20592 1.24809 1.28272 1.29049 1.38484 1.48143 1.63773 1.96321 2.15126 2.18156 2.88845 3.14906 3.40340 3.77479 3.88901 4.01970 4.02427 4.03810 4.19739 4.22097 4.28678 4.32661 4.56854 4.61186 4.71065 4.72205 4.85171 4.87446 5.12586 5.26435 5.29756 5.36930 5.61196 5.93703 6.13057 6.50718 6.71977 6.82345 7.09502 7.19911 8.66174 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.001929 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.953529 B =14511.229101 C =14929.958077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.257 4.257 4 C 0.237 3.763 5 N -0.616 5.616 6 C 0.543 3.457 7 O -0.528 6.528 8 C -0.123 4.123 9 S -0.179 6.179 10 C -0.099 4.099 11 C 0.461 3.539 12 O -0.539 6.539 13 O -0.353 6.353 14 C 0.183 3.817 15 H 0.036 0.964 16 C -0.147 4.147 17 C -0.529 4.529 18 H 0.052 0.948 19 C 0.037 3.963 20 N -0.920 5.920 21 Si 0.925 3.075 22 H -0.270 1.270 23 H -0.267 1.267 24 H -0.253 1.253 25 N -0.407 5.407 26 O 0.089 5.911 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.180 0.820 31 H 0.436 0.564 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.323 -27.448 -5.265 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.280 4.280 4 C -0.013 4.013 5 N -0.271 5.271 6 C 0.329 3.671 7 O -0.402 6.402 8 C -0.273 4.273 9 S 0.046 5.954 10 C -0.247 4.247 11 C 0.304 3.696 12 O -0.430 6.430 13 O -0.269 6.269 14 C 0.129 3.871 15 H 0.054 0.946 16 C -0.205 4.205 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.165 4.165 20 N -0.557 5.557 21 Si 0.748 3.252 22 H -0.196 1.196 23 H -0.191 1.191 24 H -0.176 1.176 25 N -0.125 5.125 26 O 0.030 5.970 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.197 0.803 31 H 0.277 0.723 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.427 -27.132 -5.175 31.638 hybrid contribution 0.957 0.759 0.401 1.286 sum -14.470 -26.373 -4.774 30.458 Atomic orbital electron populations 1.20623 0.80570 1.06234 1.05774 1.25115 0.97994 0.84582 0.99036 1.22777 0.89885 1.02392 1.12979 1.20768 0.89246 0.89071 1.02178 1.42301 1.06508 1.05729 1.72525 1.20238 0.91292 0.80844 0.74702 1.90738 1.33823 1.68299 1.47347 1.23496 0.97686 0.94315 1.11848 1.88644 1.07622 1.00693 1.98456 1.23214 1.00667 0.89246 1.11600 1.23390 0.82741 0.91383 0.72079 1.90642 1.29594 1.75745 1.46983 1.86602 1.35404 1.22706 1.82193 1.20851 0.96782 0.73603 0.95871 0.94620 1.22145 1.01384 1.01058 0.95930 1.20899 0.94242 1.10308 1.31195 0.92977 1.25624 1.00836 0.96370 0.93644 1.69946 1.32509 1.19669 1.33620 0.86069 0.80386 0.78598 0.80103 1.19552 1.19121 1.17648 1.74021 0.98403 1.13115 1.26959 1.84761 1.10358 1.32890 1.68953 0.87511 0.87808 0.87808 0.80296 0.72343 0.82546 0.82290 0.83159 0.82473 0.91798 0.91614 0.93396 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.45 71.24 0.74 0.32 16 2 C 0.00 -0.05 7.48 25.00 0.19 0.13 16 3 C -0.26 -5.15 9.79 22.52 0.22 -4.93 16 4 C 0.24 4.76 8.18 134.11 1.10 5.86 16 5 N -0.62 -8.98 5.42 -309.53 -1.68 -10.65 16 6 C 0.54 9.63 7.81 87.66 0.68 10.32 16 7 O -0.53 -14.13 13.15 -3.02 -0.04 -14.17 16 8 C -0.12 -1.42 6.42 71.24 0.46 -0.96 16 9 S -0.18 -4.43 20.01 -56.49 -1.13 -5.56 16 10 C -0.10 -2.26 6.54 71.24 0.47 -1.79 16 11 C 0.46 17.21 7.95 71.24 0.57 17.78 16 12 O -0.54 -23.92 15.08 21.95 0.33 -23.59 16 13 O -0.35 -15.34 9.86 -51.38 -0.51 -15.85 16 14 C 0.18 8.98 2.22 29.85 0.07 9.04 16 15 H 0.04 1.85 4.31 -2.39 -0.01 1.84 16 16 C -0.15 -6.31 9.53 71.98 0.69 -5.63 16 17 C -0.53 -30.01 9.25 25.60 0.24 -29.77 16 18 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 19 C 0.04 2.09 5.47 84.66 0.46 2.55 16 20 N -0.92 -54.83 13.96 21.45 0.30 -54.53 16 21 Si 0.93 43.97 26.99 68.60 1.85 45.83 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.25 -11.61 6.82 99.48 0.68 -10.93 16 25 N -0.41 -8.42 12.10 -56.33 -0.68 -9.10 16 26 O 0.09 1.63 11.19 71.22 0.80 2.43 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.18 4.03 6.22 -2.91 -0.02 4.01 16 31 H 0.44 3.14 8.82 -92.71 -0.82 2.32 16 32 H 0.16 0.78 8.14 -2.40 -0.02 0.76 16 33 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.59 357.01 5.37 -76.22 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.26 Total: 6.06 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.87 Total: 2.93 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.06 Total: -74.29 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: 0.58 Total: -51.19 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.85 Total: 45.83 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.13 Total: -5.56 kcal Total: -81.59 5.37 -76.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.752 kcal (2) G-P(sol) polarization free energy of solvation -81.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds