Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00231 * 2 1 4 4 H 1.48498 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47113 * 300.00219 * 3 2 1 6 6 H 1.48503 * 109.46711 * 60.00316 * 3 2 1 7 7 C 1.37875 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00519 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47579 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47516 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47389 * 180.02562 * 11 10 9 13 13 C 1.38825 * 120.00138 * 179.97438 * 12 11 10 14 14 C 1.38970 * 120.17889 * 354.22679 * 13 12 11 15 15 C 1.37950 * 120.06713 * 179.71983 * 14 13 12 16 16 C 1.38628 * 120.43458 * 0.56296 * 15 14 13 17 17 S 1.76197 * 119.81843 * 179.69984 * 16 15 14 18 18 N 1.65601 * 107.21855 * 270.02118 * 17 16 15 19 19 O 1.42103 * 106.40313 * 23.55719 * 17 16 15 20 20 O 1.42096 * 106.40606 * 156.48006 * 17 16 15 21 21 C 1.37723 * 120.36508 * 359.71699 * 16 15 14 22 22 C 1.39803 * 119.91749 * 0.02562 * 21 16 15 23 23 C 1.47291 * 120.21240 * 179.97438 * 22 21 16 24 24 O 1.21527 * 119.99957 * 185.79079 * 23 22 21 25 25 O 1.34766 * 119.99716 * 5.78303 * 23 22 21 26 26 H 0.97000 * 119.99812 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47132 * 60.00076 * 9 7 2 28 28 H 1.09003 * 109.47181 * 300.00250 * 9 7 2 29 29 H 1.09003 * 109.46882 * 59.99855 * 10 9 7 30 30 H 1.09003 * 109.47013 * 300.00285 * 10 9 7 31 31 H 1.08999 * 109.46486 * 300.00015 * 11 10 9 32 32 H 1.08999 * 109.46901 * 59.99891 * 11 10 9 33 33 H 0.96997 * 119.99607 * 359.97438 * 12 11 10 34 34 H 1.07999 * 119.96371 * 0.02562 * 14 13 12 35 35 H 1.07998 * 119.77728 * 180.28400 * 15 14 13 36 36 H 0.97007 * 119.99959 * 359.97438 * 18 17 16 37 37 H 0.96999 * 120.00605 * 179.97438 * 18 17 16 38 38 H 1.07995 * 120.04125 * 180.02562 * 21 16 15 39 39 H 0.96708 * 116.99388 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9694 -7.4095 -0.0004 14 6 0.6096 -7.6697 0.1199 15 6 0.1517 -8.9710 0.1140 16 6 1.0414 -10.0280 0.0000 17 16 0.4395 -11.6840 0.0021 18 7 0.4141 -12.1943 1.5773 19 8 -0.9157 -11.6189 -0.4205 20 8 1.4227 -12.4692 -0.6582 21 6 2.3932 -9.7908 -0.1145 22 6 2.8732 -8.4778 -0.1155 23 6 4.3176 -8.2167 -0.2371 24 8 4.7411 -7.0824 -0.1321 25 8 5.1697 -9.2357 -0.4646 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6043 0.8895 30 1 2.8718 -3.6043 -0.8905 31 1 0.8532 -5.0450 0.8886 32 1 0.8538 -5.0446 -0.8914 33 1 3.3857 -5.9234 -0.0002 34 1 -0.0899 -6.8522 0.2133 35 1 -0.9065 -9.1677 0.2032 36 1 0.7034 -11.5975 2.2852 37 1 0.1099 -13.0899 1.7922 38 1 3.0816 -10.6182 -0.2034 39 1 6.1085 -9.0151 -0.5372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739068215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = -150.635970 kcal Electronic energy + Delta-G solvation = -24918.009114 eV Core-core repulsion = 20951.994518 eV Total energy + Delta-G solvation = -3966.014597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93009 -39.14147 -37.29564 -36.84299 -36.06995 -35.97095 -33.80590 -33.43290 -32.00949 -31.62994 -29.57022 -26.64973 -24.92148 -23.81126 -22.25157 -21.86327 -20.38795 -19.71432 -18.79703 -18.23838 -17.60283 -17.40777 -16.90661 -16.55522 -16.04709 -15.92374 -15.70319 -15.37499 -15.07126 -14.61631 -14.43313 -14.10849 -13.53198 -13.44021 -13.28570 -12.44448 -12.36802 -12.27276 -12.22811 -12.20164 -11.99936 -11.91910 -11.86977 -11.21258 -11.05391 -10.87120 -10.75632 -10.65397 -10.61705 -10.55452 -9.91502 -9.59597 -9.49961 -9.21880 -8.45803 -7.97733 -6.10503 -4.13393 0.23655 0.48525 0.81458 2.19248 2.75102 2.93743 3.24990 3.25040 3.26036 3.33012 3.37335 3.56104 4.23913 4.38133 4.51171 4.60528 4.95092 5.01935 5.21031 5.25927 5.40253 5.41627 5.47495 5.55580 5.70185 5.77774 5.84529 5.88462 6.14820 6.29744 6.40029 6.50845 6.72245 6.84235 7.00858 7.50868 7.51563 7.62284 7.75451 7.87558 8.28953 8.92978 9.51579 11.00851 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.002404 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.097756 B =11646.050180 C =12852.582070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.100 3.900 12 N -0.696 5.696 13 C 0.331 3.669 14 C -0.226 4.226 15 C 0.056 3.944 16 C -0.761 4.761 17 S 2.709 3.291 18 N -1.253 6.253 19 O -0.968 6.968 20 O -0.970 6.970 21 C 0.095 3.905 22 C -0.248 4.248 23 C 0.540 3.460 24 O -0.525 6.525 25 O -0.509 6.509 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.422 0.578 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.417 0.583 37 H 0.418 0.582 38 H 0.153 0.847 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -25.155 3.577 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.023 4.023 12 N -0.324 5.324 13 C 0.211 3.789 14 C -0.249 4.249 15 C 0.035 3.965 16 C -0.852 4.852 17 S 2.799 3.201 18 N -0.927 5.927 19 O -0.958 6.958 20 O -0.959 6.959 21 C 0.075 3.925 22 C -0.255 4.255 23 C 0.387 3.613 24 O -0.416 6.416 25 O -0.321 6.321 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.243 0.757 37 H 0.247 0.753 38 H 0.170 0.830 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 2.625 -25.001 2.685 25.282 hybrid contribution 1.642 1.828 0.649 2.542 sum 4.267 -23.173 3.334 23.797 Atomic orbital electron populations 1.69958 1.06063 1.26702 1.50597 1.25017 0.94878 0.99370 0.95136 0.86512 0.80097 0.83602 0.77660 1.19733 1.20922 1.20933 1.21225 0.93110 0.90846 1.50960 0.92555 1.19033 0.93722 0.90856 0.97598 1.21882 0.99864 0.92725 1.01445 1.22027 0.92434 0.85998 1.01823 1.46462 1.13006 1.02297 1.70662 1.18146 0.92500 0.84648 0.83607 1.20865 0.93295 0.98118 1.12613 1.20829 0.99192 0.91003 0.85450 1.29974 1.02212 1.22337 1.30698 1.01178 0.73753 0.73003 0.72140 1.53138 1.85555 1.26507 1.27502 1.93593 1.35586 1.86546 1.80058 1.93591 1.61652 1.68100 1.72564 1.20936 0.93488 0.95925 0.82130 1.18389 0.88890 0.93908 1.24361 1.20593 0.86955 0.81995 0.71737 1.90604 1.78379 1.23296 1.49311 1.84563 1.23390 1.40116 1.84008 0.92914 0.96224 0.96237 0.92455 0.92474 0.91204 0.91183 0.72999 0.83658 0.83593 0.75651 0.75262 0.82966 0.72544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.10 1.54 4.94 -4.04 -0.02 1.52 16 12 N -0.70 -10.02 5.59 -58.44 -0.33 -10.35 16 13 C 0.33 4.25 6.65 -83.61 -0.56 3.70 16 14 C -0.23 -2.52 9.30 -39.42 -0.37 -2.88 16 15 C 0.06 0.54 9.50 -39.54 -0.38 0.17 16 16 C -0.76 -7.15 5.94 -39.63 -0.24 -7.39 16 17 S 2.71 23.49 6.28 -107.50 -0.67 22.82 16 18 N -1.25 -5.87 9.55 60.35 0.58 -5.30 16 19 O -0.97 -11.40 17.26 -57.17 -0.99 -12.38 16 20 O -0.97 -11.33 17.26 -57.17 -0.99 -12.32 16 21 C 0.10 0.96 9.08 -39.18 -0.36 0.61 16 22 C -0.25 -2.95 5.89 -104.82 -0.62 -3.57 16 23 C 0.54 6.37 8.25 34.41 0.28 6.65 16 24 O -0.52 -7.49 14.43 -19.29 -0.28 -7.77 16 25 O -0.51 -4.28 12.70 -40.67 -0.52 -4.80 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 32 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.42 6.46 4.99 -40.94 -0.20 6.26 16 34 H 0.15 1.49 6.72 -52.49 -0.35 1.14 16 35 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 36 H 0.42 1.11 8.92 -34.47 -0.31 0.80 16 37 H 0.42 1.28 8.96 -34.48 -0.31 0.97 16 38 H 0.15 1.32 7.16 -52.49 -0.38 0.94 16 39 H 0.42 1.65 9.11 45.56 0.42 2.06 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -36.53 349.48 -8.73 -45.27 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.59 Total: 5.10 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.93 Total: -16.36 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.99 Total: -41.06 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -2.77 Total: -37.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 23.49 SS G_CDS: -0.67 Total: 22.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.53 -8.73 -45.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739068215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.371 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds