Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00231 * 2 1 4 4 H 1.48498 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47113 * 300.00219 * 3 2 1 6 6 H 1.48503 * 109.46711 * 60.00316 * 3 2 1 7 7 C 1.37875 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00519 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47579 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47516 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47389 * 180.02562 * 11 10 9 13 13 C 1.38825 * 120.00138 * 179.97438 * 12 11 10 14 14 C 1.38970 * 120.17889 * 354.22679 * 13 12 11 15 15 C 1.37950 * 120.06713 * 179.71983 * 14 13 12 16 16 C 1.38628 * 120.43458 * 0.56296 * 15 14 13 17 17 S 1.76197 * 119.81843 * 179.69984 * 16 15 14 18 18 N 1.65601 * 107.21855 * 270.02118 * 17 16 15 19 19 O 1.42103 * 106.40313 * 23.55719 * 17 16 15 20 20 O 1.42096 * 106.40606 * 156.48006 * 17 16 15 21 21 C 1.37723 * 120.36508 * 359.71699 * 16 15 14 22 22 C 1.39803 * 119.91749 * 0.02562 * 21 16 15 23 23 C 1.47291 * 120.21240 * 179.97438 * 22 21 16 24 24 O 1.21527 * 119.99957 * 185.79079 * 23 22 21 25 25 O 1.34766 * 119.99716 * 5.78303 * 23 22 21 26 26 H 0.97000 * 119.99812 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47132 * 60.00076 * 9 7 2 28 28 H 1.09003 * 109.47181 * 300.00250 * 9 7 2 29 29 H 1.09003 * 109.46882 * 59.99855 * 10 9 7 30 30 H 1.09003 * 109.47013 * 300.00285 * 10 9 7 31 31 H 1.08999 * 109.46486 * 300.00015 * 11 10 9 32 32 H 1.08999 * 109.46901 * 59.99891 * 11 10 9 33 33 H 0.96997 * 119.99607 * 359.97438 * 12 11 10 34 34 H 1.07999 * 119.96371 * 0.02562 * 14 13 12 35 35 H 1.07998 * 119.77728 * 180.28400 * 15 14 13 36 36 H 0.97007 * 119.99959 * 359.97438 * 18 17 16 37 37 H 0.96999 * 120.00605 * 179.97438 * 18 17 16 38 38 H 1.07995 * 120.04125 * 180.02562 * 21 16 15 39 39 H 0.96708 * 116.99388 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9694 -7.4095 -0.0004 14 6 0.6096 -7.6697 0.1199 15 6 0.1517 -8.9710 0.1140 16 6 1.0414 -10.0280 0.0000 17 16 0.4395 -11.6840 0.0021 18 7 0.4141 -12.1943 1.5773 19 8 -0.9157 -11.6189 -0.4205 20 8 1.4227 -12.4692 -0.6582 21 6 2.3932 -9.7908 -0.1145 22 6 2.8732 -8.4778 -0.1155 23 6 4.3176 -8.2167 -0.2371 24 8 4.7411 -7.0824 -0.1321 25 8 5.1697 -9.2357 -0.4646 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6043 0.8895 30 1 2.8718 -3.6043 -0.8905 31 1 0.8532 -5.0450 0.8886 32 1 0.8538 -5.0446 -0.8914 33 1 3.3857 -5.9234 -0.0002 34 1 -0.0899 -6.8522 0.2133 35 1 -0.9065 -9.1677 0.2032 36 1 0.7034 -11.5975 2.2852 37 1 0.1099 -13.0899 1.7922 38 1 3.0816 -10.6182 -0.2034 39 1 6.1085 -9.0151 -0.5372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739068215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = -180.548818 kcal Electronic energy + Delta-G solvation = -24919.306233 eV Core-core repulsion = 20951.994518 eV Total energy + Delta-G solvation = -3967.311715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81688 -40.01595 -38.12583 -37.86285 -37.06097 -36.81244 -35.55194 -33.93094 -33.56136 -32.60649 -30.77446 -28.24826 -25.78050 -25.35566 -23.17243 -23.09382 -21.85768 -20.42949 -19.54135 -19.05121 -18.57878 -18.35140 -18.23133 -17.60324 -17.05709 -16.83502 -16.54464 -16.44626 -16.38633 -16.24778 -15.37469 -15.12591 -14.60450 -14.38237 -14.30200 -14.13457 -13.70555 -13.61056 -13.13207 -13.09492 -13.07325 -12.86366 -12.83414 -12.69669 -12.66983 -12.40652 -12.00260 -11.94541 -11.55157 -11.52073 -11.39003 -11.23632 -11.22889 -10.58879 -10.33780 -8.96678 -8.23951 -6.34282 -0.49525 -0.37323 -0.02893 1.32283 1.37885 1.38875 1.51378 1.99079 2.15726 2.27799 2.39556 2.45922 2.84730 3.10073 3.43585 3.69335 3.83995 3.99503 4.10286 4.12014 4.25153 4.41507 4.50575 4.55249 4.77010 4.85745 4.89878 4.97577 5.01127 5.08363 5.38228 5.41953 5.45771 5.53946 5.66184 5.79867 5.96228 6.21075 6.44378 6.54498 6.81701 6.90399 7.35068 8.87860 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.002404 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.097756 B =11646.050180 C =12852.582070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.107 4.107 11 C 0.115 3.885 12 N -0.708 5.708 13 C 0.314 3.686 14 C -0.234 4.234 15 C 0.061 3.939 16 C -0.752 4.752 17 S 2.737 3.263 18 N -1.236 6.236 19 O -0.997 6.997 20 O -0.998 6.998 21 C 0.097 3.903 22 C -0.258 4.258 23 C 0.542 3.458 24 O -0.555 6.555 25 O -0.499 6.499 26 H 0.265 0.735 27 H 0.000 1.000 28 H 0.002 0.998 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.429 0.571 37 H 0.429 0.571 38 H 0.169 0.831 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -26.557 4.096 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.008 4.008 12 N -0.338 5.338 13 C 0.196 3.804 14 C -0.257 4.257 15 C 0.041 3.959 16 C -0.842 4.842 17 S 2.827 3.173 18 N -0.916 5.916 19 O -0.986 6.986 20 O -0.987 6.987 21 C 0.077 3.923 22 C -0.265 4.265 23 C 0.390 3.610 24 O -0.448 6.448 25 O -0.312 6.312 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.259 0.741 37 H 0.261 0.739 38 H 0.186 0.814 39 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 3.106 -26.458 3.211 26.833 hybrid contribution 1.494 2.089 0.508 2.618 sum 4.600 -24.370 3.719 25.078 Atomic orbital electron populations 1.70069 1.07583 1.27798 1.51478 1.25909 0.95780 1.03160 0.94705 0.85442 0.78967 0.79022 0.77880 1.18963 1.20337 1.20232 1.21679 0.93447 0.92468 1.50763 0.92563 1.18904 0.94127 0.92096 0.95726 1.21586 0.98712 0.93079 1.01105 1.21679 0.92020 0.84708 1.02405 1.46219 1.12277 1.02580 1.72762 1.18377 0.93424 0.84115 0.84448 1.21027 0.92809 0.99061 1.12800 1.21114 1.00362 0.90357 0.84095 1.30113 1.01978 1.22711 1.29429 1.00198 0.72546 0.72049 0.72535 1.52712 1.85325 1.27335 1.26226 1.93565 1.37051 1.86746 1.81270 1.93562 1.62370 1.68670 1.74083 1.21122 0.94068 0.95613 0.81526 1.18551 0.89106 0.94335 1.24555 1.20629 0.87330 0.81924 0.71115 1.90592 1.78875 1.24542 1.50796 1.84518 1.24748 1.38770 1.83166 0.92652 0.98155 0.97915 0.92606 0.92938 0.90387 0.90958 0.73611 0.83117 0.81447 0.74114 0.73876 0.81405 0.70244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.11 -4.18 5.27 30.59 0.16 -4.02 16 11 C 0.12 3.58 4.94 86.38 0.43 4.01 16 12 N -0.71 -20.45 5.59 -338.80 -1.89 -22.35 16 13 C 0.31 7.87 6.65 38.74 0.26 8.13 16 14 C -0.23 -4.95 9.30 22.38 0.21 -4.74 16 15 C 0.06 1.06 9.50 22.29 0.21 1.27 16 16 C -0.75 -12.56 5.94 22.24 0.13 -12.43 16 17 S 2.74 41.59 6.28 -56.49 -0.35 41.23 16 18 N -1.24 -8.21 9.55 37.02 0.35 -7.86 16 19 O -1.00 -21.52 17.26 -128.00 -2.21 -23.73 16 20 O -1.00 -21.38 17.26 -128.00 -2.21 -23.59 16 21 C 0.10 1.77 9.08 22.53 0.20 1.97 16 22 C -0.26 -5.87 5.89 -19.99 -0.12 -5.99 16 23 C 0.54 12.32 8.25 70.20 0.58 12.90 16 24 O -0.55 -15.79 14.43 19.75 0.29 -15.50 16 25 O -0.50 -7.51 12.70 -56.77 -0.72 -8.24 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 2.26 7.72 -2.39 -0.02 2.24 16 32 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 33 H 0.42 12.95 4.99 -94.61 -0.47 12.48 16 34 H 0.15 2.97 6.72 -2.91 -0.02 2.95 16 35 H 0.17 2.16 7.60 -2.91 -0.02 2.14 16 36 H 0.43 0.99 8.92 -96.74 -0.86 0.13 16 37 H 0.43 1.44 8.96 -96.74 -0.87 0.57 16 38 H 0.17 2.51 7.16 -2.91 -0.02 2.49 16 39 H 0.44 2.66 9.11 -74.05 -0.67 1.98 16 Total: -1.00 -78.43 349.48 -3.26 -81.69 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -1.73 Total: 14.37 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 2.91 Total: -26.93 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -1.25 Total: -85.07 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -4.85 Total: -71.06 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 41.59 SS G_CDS: -0.35 Total: 41.23 kcal Total: -78.43 -3.26 -81.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739068215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.862 kcal (2) G-P(sol) polarization free energy of solvation -78.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds