Wall clock time and date at job start Tue Mar 31 2020 14:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00209 * 2 1 4 4 H 1.48504 * 109.46908 * 269.99689 * 3 2 1 5 5 H 1.48498 * 109.46895 * 29.99584 * 3 2 1 6 6 H 1.48490 * 109.47213 * 149.99890 * 3 2 1 7 7 C 1.38708 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99427 * 0.02562 * 7 2 1 9 9 O 1.34811 * 120.00062 * 180.02562 * 7 2 1 10 10 C 1.35515 * 116.99846 * 174.93804 * 9 7 2 11 11 C 1.38830 * 120.16510 * 5.54566 * 10 9 7 12 12 C 1.38026 * 120.07694 * 180.30240 * 11 10 9 13 13 C 1.38576 * 120.40271 * 359.69968 * 12 11 10 14 14 C 1.37828 * 120.32743 * 0.02562 * 13 12 11 15 15 C 1.39682 * 119.91633 * 0.02562 * 14 13 12 16 16 C 1.47493 * 120.19916 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99821 * 179.97438 * 16 15 14 18 18 N 1.34770 * 120.00002 * 0.02562 * 16 15 14 19 19 C 1.39336 * 120.00260 * 185.16272 * 18 16 15 20 20 C 1.39040 * 119.63562 * 174.87980 * 19 18 16 21 21 C 1.39591 * 118.92575 * 180.02562 * 20 19 18 22 22 C 1.48061 * 120.88959 * 180.02562 * 21 20 19 23 23 O 1.21429 * 120.00101 * 359.97438 * 22 21 20 24 24 O 1.34666 * 119.99826 * 179.97438 * 22 21 20 25 25 C 1.40029 * 118.21816 * 359.97438 * 21 20 19 26 26 C 1.37993 * 119.15517 * 0.02562 * 25 21 20 27 27 N 1.31876 * 120.99881 * 359.97438 * 26 25 21 28 28 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.96112 * 0.02635 * 11 10 9 30 30 H 1.07996 * 119.80117 * 179.71973 * 12 11 10 31 31 H 1.08002 * 119.84184 * 180.02562 * 13 12 11 32 32 H 1.07997 * 120.04053 * 179.97438 * 14 13 12 33 33 H 0.97005 * 120.00413 * 5.16119 * 18 16 15 34 34 H 1.08000 * 120.53754 * 0.02562 * 20 19 18 35 35 H 0.96703 * 116.99637 * 179.97438 * 24 22 21 36 36 H 1.07996 * 120.42065 * 180.02562 * 25 21 20 37 37 H 1.07997 * 119.50246 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0087 -1.2012 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2012 0.0011 10 6 3.9720 -2.4039 0.1081 11 6 3.2242 -3.5736 0.0952 12 6 3.8521 -4.7973 0.2107 13 6 5.2305 -4.8695 0.3338 14 6 5.9896 -3.7191 0.3428 15 6 5.3680 -2.4734 0.2279 16 6 6.1742 -1.2384 0.2374 17 8 5.6295 -0.1560 0.1367 18 7 7.5148 -1.3096 0.3567 19 6 8.2668 -0.1425 0.4739 20 6 9.6355 -0.2267 0.7036 21 6 10.3745 0.9519 0.8191 22 6 11.8344 0.9129 1.0632 23 8 12.4045 -0.1543 1.1660 24 8 12.5299 2.0610 1.1711 25 6 9.6984 2.1720 0.6969 26 6 8.3374 2.1665 0.4692 27 7 7.6707 1.0334 0.3655 28 1 -0.4850 0.8400 -0.0004 29 1 2.1495 -3.5257 -0.0007 30 1 3.2656 -5.7042 0.2047 31 1 5.7124 -5.8318 0.4231 32 1 7.0634 -3.7807 0.4394 33 1 7.9562 -2.1734 0.3609 34 1 10.1191 -1.1884 0.7912 35 1 13.4806 1.9849 1.3308 36 1 10.2352 3.1054 0.7799 37 1 7.8104 3.1043 0.3736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739092711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:33 Heat of formation + Delta-G solvation = -60.481733 kcal Electronic energy + Delta-G solvation = -26506.183057 eV Core-core repulsion = 22408.633890 eV Total energy + Delta-G solvation = -4097.549167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13207 -40.25497 -39.46876 -38.12748 -36.60215 -36.52492 -34.69801 -32.87411 -32.50267 -31.21560 -29.66513 -29.26893 -25.90887 -25.39771 -24.10603 -23.09966 -22.10685 -21.25672 -20.10854 -18.99314 -18.14136 -17.96175 -17.74582 -16.64759 -16.51534 -16.07327 -15.88391 -15.26295 -15.11310 -14.91997 -14.50182 -14.33656 -14.11127 -14.02990 -13.76690 -13.63824 -13.24883 -13.00602 -12.42471 -12.26541 -12.19007 -12.02366 -11.50604 -11.33959 -11.20448 -10.91065 -10.78380 -10.71603 -10.13009 -10.06488 -9.95050 -9.54386 -8.92992 -8.85163 -8.50380 -8.31508 -7.55215 -6.51328 -4.16891 0.34637 0.89884 1.51855 2.11877 2.27746 2.43384 3.01576 3.31504 3.34982 3.38617 3.67677 3.81672 4.33377 4.34470 4.45214 4.48840 4.64260 4.70885 4.72496 4.95946 5.05055 5.22180 5.29830 5.41880 5.52906 5.59096 5.74417 5.84505 5.95745 6.00920 6.11982 6.28866 6.45410 6.65227 6.75097 6.91925 7.07526 7.32186 7.41125 7.43960 7.64540 7.89437 8.03425 8.68025 8.83400 9.44613 10.53183 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.003625 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.327498 B = 7721.932357 C = 9743.054643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.232 1.232 7 C -0.397 4.397 8 H 0.109 0.891 9 O -0.163 6.163 10 C 0.202 3.798 11 C -0.224 4.224 12 C -0.049 4.049 13 C -0.219 4.219 14 C -0.041 4.041 15 C -0.229 4.229 16 C 0.548 3.452 17 O -0.445 6.445 18 N -0.665 5.665 19 C 0.375 3.625 20 C -0.156 4.156 21 C -0.056 4.056 22 C 0.533 3.467 23 O -0.507 6.507 24 O -0.507 6.507 25 C -0.163 4.163 26 C 0.133 3.867 27 N -0.450 5.450 28 H 0.283 0.717 29 H 0.140 0.860 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.414 0.586 34 H 0.149 0.851 35 H 0.417 0.583 36 H 0.148 0.852 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.000 -0.331 1.875 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.154 1.154 7 C -0.471 4.471 8 H 0.126 0.874 9 O -0.063 6.063 10 C 0.144 3.856 11 C -0.243 4.243 12 C -0.067 4.067 13 C -0.238 4.238 14 C -0.060 4.060 15 C -0.234 4.234 16 C 0.337 3.663 17 O -0.313 6.313 18 N -0.312 5.312 19 C 0.143 3.857 20 C -0.180 4.180 21 C -0.065 4.065 22 C 0.376 3.624 23 O -0.395 6.395 24 O -0.319 6.319 25 C -0.185 4.185 26 C -0.026 4.026 27 N -0.166 5.166 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.251 0.749 34 H 0.167 0.833 35 H 0.276 0.724 36 H 0.166 0.834 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.150 0.544 1.590 19.224 hybrid contribution 1.862 -0.049 0.221 1.876 sum 21.012 0.495 1.810 21.096 Atomic orbital electron populations 1.69633 1.05876 1.29095 1.45613 1.24516 0.94979 0.99419 0.94421 0.86238 0.81636 0.80262 0.79750 1.19891 1.21263 1.15431 1.20932 0.76972 0.96823 1.52398 0.87367 1.83762 1.22265 1.24988 1.75278 1.18967 0.90100 0.85888 0.90641 1.21294 1.01438 0.91579 1.10026 1.20990 0.94389 0.96825 0.94521 1.20542 0.94010 0.97339 1.11942 1.20759 0.98070 0.91302 0.95881 1.18692 0.91090 0.92244 1.21362 1.18450 0.80264 0.90148 0.77389 1.90975 1.69503 1.28702 1.42133 1.43798 1.07919 1.06592 1.72929 1.18368 0.87081 0.87247 0.92973 1.21505 0.92713 0.99361 1.04423 1.18987 0.89575 0.94455 1.03467 1.20760 0.87875 0.81231 0.72510 1.90898 1.71061 1.31325 1.46193 1.84545 1.27833 1.35517 1.83987 1.22322 0.96117 0.98009 1.02062 1.22823 0.90609 0.96278 0.92870 1.67704 1.39136 0.96958 1.12772 0.90732 0.84286 0.86696 0.86841 0.86866 0.74854 0.83322 0.72426 0.83389 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.92 13.96 55.48 0.77 -24.15 16 2 C 0.07 2.06 5.49 -17.51 -0.10 1.97 16 3 Si 0.90 22.84 28.62 -169.99 -4.86 17.98 16 4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.23 -6.25 6.95 56.52 0.39 -5.85 16 7 C -0.40 -11.14 9.95 30.91 0.31 -10.83 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 9 O -0.16 -4.39 6.67 -21.03 -0.14 -4.53 16 10 C 0.20 4.64 6.66 -38.59 -0.26 4.38 16 11 C -0.22 -4.58 9.16 -39.44 -0.36 -4.94 16 12 C -0.05 -0.80 10.03 -39.53 -0.40 -1.20 16 13 C -0.22 -3.23 10.02 -39.61 -0.40 -3.63 16 14 C -0.04 -0.63 9.53 -39.19 -0.37 -1.00 16 15 C -0.23 -4.48 5.89 -104.81 -0.62 -5.09 16 16 C 0.55 10.92 7.72 -12.49 -0.10 10.83 16 17 O -0.45 -10.90 13.27 -16.57 -0.22 -11.12 16 18 N -0.66 -9.96 5.33 -12.41 -0.07 -10.02 16 19 C 0.38 5.61 7.42 -154.83 -1.15 4.47 16 20 C -0.16 -1.84 9.51 -38.78 -0.37 -2.21 16 21 C -0.06 -0.61 5.90 -104.69 -0.62 -1.23 16 22 C 0.53 5.28 8.30 34.76 0.29 5.56 16 23 O -0.51 -6.23 17.23 -19.21 -0.33 -6.56 16 24 O -0.51 -3.33 12.78 -40.40 -0.52 -3.85 16 25 C -0.16 -1.65 9.70 -39.00 -0.38 -2.03 16 26 C 0.13 1.68 11.16 -17.62 -0.20 1.48 16 27 N -0.45 -7.66 7.85 -12.43 -0.10 -7.76 16 28 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.14 2.95 5.64 -52.48 -0.30 2.66 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.23 6.42 -52.49 -0.34 0.89 16 33 H 0.41 4.48 6.74 -40.82 -0.28 4.20 16 34 H 0.15 1.47 7.74 -52.49 -0.41 1.07 16 35 H 0.42 0.80 9.11 45.56 0.42 1.22 16 36 H 0.15 1.09 7.71 -52.49 -0.40 0.69 16 37 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -36.32 334.60 -7.13 -43.45 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -2.00 Total: 4.98 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.71 Total: -3.47 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.61 Total: -41.93 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.21 Total: -26.05 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.86 Total: 17.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.32 -7.13 -43.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.032 kcal (2) G-P(sol) polarization free energy of solvation -36.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds