Wall clock time and date at job start Tue Mar 31 2020 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00209 * 2 1 4 4 H 1.48504 * 109.46908 * 269.99689 * 3 2 1 5 5 H 1.48498 * 109.46895 * 29.99584 * 3 2 1 6 6 H 1.48490 * 109.47213 * 149.99890 * 3 2 1 7 7 C 1.38708 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99427 * 0.02562 * 7 2 1 9 9 O 1.34811 * 120.00062 * 180.02562 * 7 2 1 10 10 C 1.35515 * 116.99846 * 174.93804 * 9 7 2 11 11 C 1.38830 * 120.16510 * 5.54566 * 10 9 7 12 12 C 1.38026 * 120.07694 * 180.30240 * 11 10 9 13 13 C 1.38576 * 120.40271 * 359.69968 * 12 11 10 14 14 C 1.37828 * 120.32743 * 0.02562 * 13 12 11 15 15 C 1.39682 * 119.91633 * 0.02562 * 14 13 12 16 16 C 1.47493 * 120.19916 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99821 * 179.97438 * 16 15 14 18 18 N 1.34770 * 120.00002 * 0.02562 * 16 15 14 19 19 C 1.39336 * 120.00260 * 185.16272 * 18 16 15 20 20 C 1.39040 * 119.63562 * 174.87980 * 19 18 16 21 21 C 1.39591 * 118.92575 * 180.02562 * 20 19 18 22 22 C 1.48061 * 120.88959 * 180.02562 * 21 20 19 23 23 O 1.21429 * 120.00101 * 359.97438 * 22 21 20 24 24 O 1.34666 * 119.99826 * 179.97438 * 22 21 20 25 25 C 1.40029 * 118.21816 * 359.97438 * 21 20 19 26 26 C 1.37993 * 119.15517 * 0.02562 * 25 21 20 27 27 N 1.31876 * 120.99881 * 359.97438 * 26 25 21 28 28 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.96112 * 0.02635 * 11 10 9 30 30 H 1.07996 * 119.80117 * 179.71973 * 12 11 10 31 31 H 1.08002 * 119.84184 * 180.02562 * 13 12 11 32 32 H 1.07997 * 120.04053 * 179.97438 * 14 13 12 33 33 H 0.97005 * 120.00413 * 5.16119 * 18 16 15 34 34 H 1.08000 * 120.53754 * 0.02562 * 20 19 18 35 35 H 0.96703 * 116.99637 * 179.97438 * 24 22 21 36 36 H 1.07996 * 120.42065 * 180.02562 * 25 21 20 37 37 H 1.07997 * 119.50246 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0087 -1.2012 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2012 0.0011 10 6 3.9720 -2.4039 0.1081 11 6 3.2242 -3.5736 0.0952 12 6 3.8521 -4.7973 0.2107 13 6 5.2305 -4.8695 0.3338 14 6 5.9896 -3.7191 0.3428 15 6 5.3680 -2.4734 0.2279 16 6 6.1742 -1.2384 0.2374 17 8 5.6295 -0.1560 0.1367 18 7 7.5148 -1.3096 0.3567 19 6 8.2668 -0.1425 0.4739 20 6 9.6355 -0.2267 0.7036 21 6 10.3745 0.9519 0.8191 22 6 11.8344 0.9129 1.0632 23 8 12.4045 -0.1543 1.1660 24 8 12.5299 2.0610 1.1711 25 6 9.6984 2.1720 0.6969 26 6 8.3374 2.1665 0.4692 27 7 7.6707 1.0334 0.3655 28 1 -0.4850 0.8400 -0.0004 29 1 2.1495 -3.5257 -0.0007 30 1 3.2656 -5.7042 0.2047 31 1 5.7124 -5.8318 0.4231 32 1 7.0634 -3.7807 0.4394 33 1 7.9562 -2.1734 0.3609 34 1 10.1191 -1.1884 0.7912 35 1 13.4806 1.9849 1.3308 36 1 10.2352 3.1054 0.7799 37 1 7.8104 3.1043 0.3736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739092711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:32 Heat of formation + Delta-G solvation = -86.415942 kcal Electronic energy + Delta-G solvation = -26507.307649 eV Core-core repulsion = 22408.633890 eV Total energy + Delta-G solvation = -4098.673759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15628 -41.38173 -40.72442 -39.55841 -38.16748 -37.19219 -36.01968 -34.52252 -33.84487 -32.56285 -30.83508 -30.79112 -27.35792 -26.78406 -25.36846 -24.20707 -23.33313 -22.62014 -21.37439 -20.07262 -19.82808 -19.20817 -18.80525 -18.11817 -17.59466 -16.84277 -16.80934 -16.64331 -16.41806 -16.36014 -15.94862 -15.66531 -15.60830 -15.46927 -15.24453 -14.63577 -14.56826 -14.36012 -14.23887 -14.03232 -13.14617 -13.11972 -12.83377 -12.67924 -12.60757 -12.40904 -12.03690 -11.99855 -11.91345 -11.56722 -11.12039 -11.11220 -10.96999 -10.14477 -9.93947 -9.41203 -9.15199 -8.58142 -6.27241 -0.53118 -0.18674 0.18412 0.63974 1.26507 1.31493 1.45402 1.59849 1.61845 1.99080 2.01750 2.31235 2.71235 2.81350 2.99502 3.16226 3.31157 3.64792 3.77781 3.87279 3.93507 4.00691 4.19690 4.25922 4.46565 4.55109 4.57702 4.68715 4.78230 4.90604 5.03418 5.13158 5.27072 5.45925 5.46194 5.57701 5.62385 5.68971 5.82740 6.13262 6.19678 6.78282 6.87287 6.95504 7.33987 7.57028 8.52004 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.003625 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.327498 B = 7721.932357 C = 9743.054643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.402 4.402 8 H 0.093 0.907 9 O -0.208 6.208 10 C 0.164 3.836 11 C -0.250 4.250 12 C -0.040 4.040 13 C -0.188 4.188 14 C -0.030 4.030 15 C -0.233 4.233 16 C 0.546 3.454 17 O -0.501 6.501 18 N -0.648 5.648 19 C 0.346 3.654 20 C -0.139 4.139 21 C -0.065 4.065 22 C 0.545 3.455 23 O -0.532 6.532 24 O -0.495 6.495 25 C -0.133 4.133 26 C 0.114 3.886 27 N -0.506 5.506 28 H 0.286 0.714 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.433 0.567 34 H 0.171 0.829 35 H 0.439 0.561 36 H 0.182 0.818 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.932 -2.246 2.473 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.110 0.890 9 O -0.112 6.112 10 C 0.111 3.889 11 C -0.269 4.269 12 C -0.058 4.058 13 C -0.206 4.206 14 C -0.049 4.049 15 C -0.238 4.238 16 C 0.335 3.665 17 O -0.373 6.373 18 N -0.297 5.297 19 C 0.115 3.885 20 C -0.162 4.162 21 C -0.074 4.074 22 C 0.389 3.611 23 O -0.423 6.423 24 O -0.309 6.309 25 C -0.154 4.154 26 C -0.043 4.043 27 N -0.221 5.221 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.275 0.725 34 H 0.189 0.811 35 H 0.303 0.697 36 H 0.200 0.800 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 24.191 -1.404 2.200 24.332 hybrid contribution 0.840 0.246 0.087 0.879 sum 25.031 -1.158 2.287 25.162 Atomic orbital electron populations 1.69679 1.06475 1.29588 1.49355 1.25043 0.95613 1.01462 0.95246 0.85421 0.79307 0.78418 0.79039 1.20253 1.19300 1.18507 1.20888 0.78291 0.96294 1.52323 0.88975 1.83758 1.20899 1.26948 1.79599 1.19727 0.91915 0.85768 0.91493 1.21335 1.00650 0.92886 1.12052 1.21474 0.95945 0.96218 0.92138 1.21247 0.93001 0.99421 1.06910 1.21388 1.00903 0.89276 0.93287 1.19138 0.89914 0.94371 1.20369 1.18618 0.81797 0.89465 0.76589 1.90958 1.71084 1.30527 1.44691 1.43373 1.06227 1.07952 1.72199 1.18506 0.88131 0.86646 0.95219 1.21616 0.91174 1.00858 1.02585 1.19232 0.90648 0.94392 1.03135 1.20404 0.87279 0.81513 0.71889 1.90901 1.71396 1.32401 1.47559 1.84487 1.29705 1.33622 1.83117 1.22603 0.94921 0.99222 0.98677 1.23145 0.91935 0.95737 0.93529 1.67547 1.41670 0.98722 1.14192 0.90451 0.86622 0.83058 0.81394 0.81433 0.72543 0.81148 0.69749 0.80031 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.88 13.96 21.62 0.30 -55.57 16 2 C 0.03 1.63 5.49 84.85 0.47 2.09 16 3 Si 0.95 51.01 28.62 68.60 1.96 52.97 16 4 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 5 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -15.06 6.95 99.48 0.69 -14.36 16 7 C -0.40 -24.48 9.95 67.93 0.68 -23.80 16 8 H 0.09 5.66 5.44 -2.91 -0.02 5.65 16 9 O -0.21 -12.04 6.67 0.93 0.01 -12.03 16 10 C 0.16 7.84 6.66 22.91 0.15 7.99 16 11 C -0.25 -10.44 9.16 22.36 0.20 -10.24 16 12 C -0.04 -1.17 10.03 22.30 0.22 -0.95 16 13 C -0.19 -4.40 10.02 22.25 0.22 -4.18 16 14 C -0.03 -0.78 9.53 22.52 0.21 -0.56 16 15 C -0.23 -8.97 5.89 -19.99 -0.12 -9.09 16 16 C 0.55 22.00 7.72 86.68 0.67 22.67 16 17 O -0.50 -25.86 13.27 16.89 0.22 -25.64 16 18 N -0.65 -18.49 5.33 -311.43 -1.66 -20.15 16 19 C 0.35 10.02 7.42 132.96 0.99 11.01 16 20 C -0.14 -2.93 9.51 22.79 0.22 -2.72 16 21 C -0.06 -1.22 5.90 -19.91 -0.12 -1.34 16 22 C 0.55 8.80 8.30 70.43 0.58 9.39 16 23 O -0.53 -11.31 17.23 20.06 0.35 -10.96 16 24 O -0.50 -4.38 12.78 -55.75 -0.71 -5.09 16 25 C -0.13 -2.34 9.70 22.65 0.22 -2.12 16 26 C 0.11 2.82 11.16 84.63 0.94 3.76 16 27 N -0.51 -17.44 7.85 -193.24 -1.52 -18.96 16 28 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 29 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.17 2.47 6.42 -2.91 -0.02 2.45 16 33 H 0.43 7.87 6.74 -92.70 -0.63 7.25 16 34 H 0.17 2.75 7.74 -2.91 -0.02 2.73 16 35 H 0.44 -0.22 9.11 -74.06 -0.67 -0.89 16 36 H 0.18 1.92 7.71 -2.91 -0.02 1.90 16 37 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -89.50 334.60 4.37 -85.13 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -0.13 Total: 8.38 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.55 Total: 1.93 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.87 Total: -94.69 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.14 Total: -53.72 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.96 Total: 52.97 kcal Total: -89.50 4.37 -85.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.283 kcal (2) G-P(sol) polarization free energy of solvation -89.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds