Wall clock time and date at job start Tue Mar 31 2020 14:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99775 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00194 * 3 2 1 5 5 H 1.48502 * 109.46879 * 30.00564 * 3 2 1 6 6 H 1.48504 * 109.46854 * 150.00299 * 3 2 1 7 7 C 1.37876 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46939 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.34780 * 117.00049 * 179.97438 * 11 10 9 13 13 O 1.21536 * 120.00057 * 359.97438 * 12 11 10 14 14 C 1.47251 * 120.00155 * 179.97438 * 12 11 10 15 15 C 1.39810 * 120.22012 * 359.97438 * 14 12 11 16 16 C 1.37711 * 119.92901 * 180.02562 * 15 14 12 17 17 C 1.38672 * 120.37249 * 359.97438 * 16 15 14 18 18 C 1.37909 * 120.44566 * 0.02562 * 17 16 15 19 19 C 1.39030 * 120.06489 * 0.02562 * 18 17 16 20 20 S 1.76204 * 120.18514 * 179.97438 * 19 18 17 21 21 C 1.76207 * 102.99896 * 354.55072 * 20 19 18 22 22 C 1.38958 * 120.07917 * 274.59474 * 21 20 19 23 23 C 1.38078 * 119.92127 * 179.76673 * 22 21 20 24 24 C 1.38304 * 120.07742 * 0.51156 * 23 22 21 25 25 C 1.38298 * 120.15602 * 359.74444 * 24 23 22 26 26 C 1.38078 * 120.07935 * 0.02562 * 25 24 23 27 27 H 0.96998 * 120.00498 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47346 * 59.99756 * 9 7 2 29 29 H 1.08999 * 109.46659 * 299.99725 * 9 7 2 30 30 H 1.08998 * 109.47429 * 59.99650 * 10 9 7 31 31 H 1.08999 * 109.47093 * 299.99303 * 10 9 7 32 32 H 1.08001 * 120.03410 * 359.97438 * 15 14 12 33 33 H 1.07994 * 119.81696 * 180.02562 * 16 15 14 34 34 H 1.08001 * 119.77597 * 179.72681 * 17 16 15 35 35 H 1.08003 * 119.96447 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.03472 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.96172 * 180.27289 * 23 22 21 38 38 H 1.08001 * 119.92005 * 179.71977 * 24 23 22 39 39 H 1.08006 * 119.96308 * 180.02562 * 25 24 23 40 40 H 1.08010 * 120.03985 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 8 1.5195 -4.9195 -0.0020 12 6 2.2536 -6.0498 -0.0024 13 8 3.4673 -5.9862 -0.0027 14 6 1.5851 -7.3619 -0.0023 15 6 0.1892 -7.4405 -0.0013 16 6 -0.4296 -8.6707 -0.0008 17 6 0.3240 -9.8348 -0.0017 18 6 1.7018 -9.7752 -0.0027 19 6 2.3457 -8.5430 -0.0022 20 16 4.1059 -8.4631 -0.0028 21 6 4.5794 -10.1527 0.1591 22 6 4.6690 -10.7332 1.4185 23 6 5.0356 -12.0588 1.5413 24 6 5.3237 -12.8056 0.4134 25 6 5.2407 -12.2296 -0.8412 26 6 4.8702 -10.9059 -0.9718 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 2.8714 -3.6046 0.8890 31 1 2.8727 -3.6039 -0.8910 32 1 -0.4030 -6.5374 -0.0002 33 1 -1.5080 -8.7294 -0.0004 34 1 -0.1713 -10.7945 0.0032 35 1 2.2812 -10.6867 -0.0030 36 1 4.4488 -10.1492 2.2999 37 1 5.1011 -12.5119 2.5194 38 1 5.6146 -13.8410 0.5127 39 1 5.4661 -12.8158 -1.7199 40 1 4.8060 -10.4566 -1.9519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745403709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:28 Heat of formation + Delta-G solvation = -37.937729 kcal Electronic energy + Delta-G solvation = -23554.228220 eV Core-core repulsion = 20003.949849 eV Total energy + Delta-G solvation = -3550.278371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18960 -39.30900 -38.54437 -36.07654 -33.34887 -31.84693 -31.46927 -31.32787 -30.84133 -30.09385 -25.46106 -24.06568 -23.02504 -22.92783 -22.85332 -21.15791 -20.54597 -18.31805 -17.91493 -17.10996 -16.42871 -16.01926 -15.93072 -15.82979 -15.32904 -14.98192 -14.85695 -14.52262 -14.27531 -13.99152 -13.82010 -13.59893 -13.09041 -12.84755 -12.73974 -12.35182 -12.23998 -11.77720 -11.54457 -11.31987 -11.23701 -11.02591 -11.01550 -10.75482 -10.62397 -9.98850 -9.88227 -9.64536 -9.58676 -9.33507 -9.29832 -9.18246 -9.07954 -8.43442 -7.50583 -6.09603 -4.13733 0.54908 0.61644 1.01347 1.09666 1.59239 2.42481 2.73436 3.14883 3.29614 3.35714 3.39535 3.40785 3.65622 4.39869 4.51668 4.59254 4.63125 4.70698 4.78671 4.91555 5.06833 5.12365 5.19392 5.27099 5.27664 5.36974 5.41521 5.62747 5.75977 5.96661 5.99575 6.00746 6.08062 6.09728 6.11384 6.12070 6.26747 6.51650 6.63007 6.64987 6.94395 7.56212 7.63118 7.87128 8.16125 8.25871 8.91715 9.50590 11.01914 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002430 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.241456 B =11521.080462 C =12516.421207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.349 6.349 12 C 0.495 3.505 13 O -0.493 6.493 14 C -0.112 4.112 15 C -0.040 4.040 16 C -0.142 4.142 17 C -0.071 4.071 18 C -0.142 4.142 19 C -0.054 4.054 20 S 0.094 5.906 21 C -0.181 4.181 22 C -0.065 4.065 23 C -0.132 4.132 24 C -0.095 4.095 25 C -0.132 4.132 26 C -0.066 4.066 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -28.298 0.432 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.340 3.660 13 O -0.384 6.384 14 C -0.120 4.120 15 C -0.060 4.060 16 C -0.163 4.163 17 C -0.091 4.091 18 C -0.166 4.166 19 C -0.168 4.168 20 S 0.346 5.654 21 C -0.291 4.291 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.113 4.113 25 C -0.152 4.152 26 C -0.086 4.086 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.441 -27.125 0.349 27.667 hybrid contribution -0.306 -0.263 0.102 0.416 sum 5.135 -27.388 0.450 27.869 Atomic orbital electron populations 1.69968 1.06081 1.26976 1.49835 1.24981 0.94920 0.99380 0.94885 0.86473 0.79783 0.82824 0.78244 1.20479 1.21066 1.19706 1.20975 0.93197 0.90076 1.52111 0.92229 1.19173 0.94194 0.88991 0.98878 1.23688 0.96428 0.78392 1.01127 1.86577 1.41729 1.15479 1.82757 1.20954 0.85718 0.85548 0.73777 1.90711 1.14704 1.86759 1.46224 1.18817 0.93761 0.89227 1.10232 1.21552 0.92630 0.99167 0.92637 1.21165 1.00479 0.91932 1.02753 1.21267 0.93353 0.98763 0.95712 1.21082 0.95293 0.95603 1.04602 1.22413 0.99296 0.94957 1.00089 1.86049 0.94978 0.96190 1.88147 1.22892 1.07712 1.02616 0.95915 1.21628 0.95452 0.94804 0.96647 1.21248 1.00644 0.94259 0.98989 1.21348 0.97366 0.99909 0.92671 1.21247 1.00968 0.95194 0.97774 1.21623 0.95302 0.93531 0.98152 0.92723 0.95333 0.95325 0.92134 0.92144 0.83508 0.84960 0.85417 0.85373 0.85158 0.85534 0.85730 0.85534 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.71 5.42 37.16 0.20 1.91 16 11 O -0.35 -7.15 9.47 -40.71 -0.39 -7.53 16 12 C 0.50 9.31 7.87 34.39 0.27 9.58 16 13 O -0.49 -10.00 13.56 -19.29 -0.26 -10.26 16 14 C -0.11 -1.74 5.89 -104.80 -0.62 -2.35 16 15 C -0.04 -0.53 9.61 -39.19 -0.38 -0.90 16 16 C -0.14 -1.46 10.02 -39.61 -0.40 -1.85 16 17 C -0.07 -0.68 10.03 -39.54 -0.40 -1.08 16 18 C -0.14 -1.60 9.35 -39.41 -0.37 -1.97 16 19 C -0.05 -0.75 6.16 -38.44 -0.24 -0.99 16 20 S 0.09 1.33 18.77 -107.50 -2.02 -0.69 16 21 C -0.18 -2.00 3.76 -39.05 -0.15 -2.15 16 22 C -0.06 -0.63 9.70 -39.37 -0.38 -1.01 16 23 C -0.13 -1.02 10.04 -39.62 -0.40 -1.42 16 24 C -0.09 -0.66 10.04 -39.53 -0.40 -1.06 16 25 C -0.13 -1.00 10.04 -39.62 -0.40 -1.40 16 26 C -0.07 -0.63 9.68 -39.37 -0.38 -1.01 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.15 1.88 7.61 -52.49 -0.40 1.48 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.31 6.26 -52.48 -0.33 0.98 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -31.94 362.35 -10.99 -42.93 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.92 Total: -2.02 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -4.58 Total: -18.72 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.65 Total: -17.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.02 Total: -0.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.94 -10.99 -42.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745403709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.994 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds