Wall clock time and date at job start Tue Mar 31 2020 14:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99775 * 2 1 4 4 H 1.48496 * 109.47097 * 270.00194 * 3 2 1 5 5 H 1.48502 * 109.46879 * 30.00564 * 3 2 1 6 6 H 1.48504 * 109.46854 * 150.00299 * 3 2 1 7 7 C 1.37876 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46939 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.34780 * 117.00049 * 179.97438 * 11 10 9 13 13 O 1.21536 * 120.00057 * 359.97438 * 12 11 10 14 14 C 1.47251 * 120.00155 * 179.97438 * 12 11 10 15 15 C 1.39810 * 120.22012 * 359.97438 * 14 12 11 16 16 C 1.37711 * 119.92901 * 180.02562 * 15 14 12 17 17 C 1.38672 * 120.37249 * 359.97438 * 16 15 14 18 18 C 1.37909 * 120.44566 * 0.02562 * 17 16 15 19 19 C 1.39030 * 120.06489 * 0.02562 * 18 17 16 20 20 S 1.76204 * 120.18514 * 179.97438 * 19 18 17 21 21 C 1.76207 * 102.99896 * 354.55072 * 20 19 18 22 22 C 1.38958 * 120.07917 * 274.59474 * 21 20 19 23 23 C 1.38078 * 119.92127 * 179.76673 * 22 21 20 24 24 C 1.38304 * 120.07742 * 0.51156 * 23 22 21 25 25 C 1.38298 * 120.15602 * 359.74444 * 24 23 22 26 26 C 1.38078 * 120.07935 * 0.02562 * 25 24 23 27 27 H 0.96998 * 120.00498 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47346 * 59.99756 * 9 7 2 29 29 H 1.08999 * 109.46659 * 299.99725 * 9 7 2 30 30 H 1.08998 * 109.47429 * 59.99650 * 10 9 7 31 31 H 1.08999 * 109.47093 * 299.99303 * 10 9 7 32 32 H 1.08001 * 120.03410 * 359.97438 * 15 14 12 33 33 H 1.07994 * 119.81696 * 180.02562 * 16 15 14 34 34 H 1.08001 * 119.77597 * 179.72681 * 17 16 15 35 35 H 1.08003 * 119.96447 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.03472 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.96172 * 180.27289 * 23 22 21 38 38 H 1.08001 * 119.92005 * 179.71977 * 24 23 22 39 39 H 1.08006 * 119.96308 * 180.02562 * 25 24 23 40 40 H 1.08010 * 120.03985 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 8 1.5195 -4.9195 -0.0020 12 6 2.2536 -6.0498 -0.0024 13 8 3.4673 -5.9862 -0.0027 14 6 1.5851 -7.3619 -0.0023 15 6 0.1892 -7.4405 -0.0013 16 6 -0.4296 -8.6707 -0.0008 17 6 0.3240 -9.8348 -0.0017 18 6 1.7018 -9.7752 -0.0027 19 6 2.3457 -8.5430 -0.0022 20 16 4.1059 -8.4631 -0.0028 21 6 4.5794 -10.1527 0.1591 22 6 4.6690 -10.7332 1.4185 23 6 5.0356 -12.0588 1.5413 24 6 5.3237 -12.8056 0.4134 25 6 5.2407 -12.2296 -0.8412 26 6 4.8702 -10.9059 -0.9718 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 2.8714 -3.6046 0.8890 31 1 2.8727 -3.6039 -0.8910 32 1 -0.4030 -6.5374 -0.0002 33 1 -1.5080 -8.7294 -0.0004 34 1 -0.1713 -10.7945 0.0032 35 1 2.2812 -10.6867 -0.0030 36 1 4.4488 -10.1492 2.2999 37 1 5.1011 -12.5119 2.5194 38 1 5.6146 -13.8410 0.5127 39 1 5.4661 -12.8158 -1.7199 40 1 4.8060 -10.4566 -1.9519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745403709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:27 Heat of formation + Delta-G solvation = -52.737137 kcal Electronic energy + Delta-G solvation = -23554.869970 eV Core-core repulsion = 20003.949849 eV Total energy + Delta-G solvation = -3550.920121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60414 -39.99935 -39.60862 -37.68411 -35.46763 -32.94266 -32.43426 -32.00876 -31.95957 -31.56711 -27.31973 -25.43137 -23.88457 -23.73849 -23.54693 -22.96424 -21.96929 -19.45164 -18.96405 -18.52185 -17.96510 -17.56614 -17.42656 -16.66609 -16.49290 -16.01884 -16.00247 -15.69953 -15.24932 -15.23834 -14.75569 -14.48876 -14.42236 -14.37479 -13.95358 -13.70217 -13.17682 -13.14091 -12.96931 -12.67599 -12.61989 -12.59672 -12.16673 -12.15499 -12.12987 -11.68662 -11.51928 -11.46052 -10.93873 -10.80470 -10.62395 -10.18008 -9.96884 -9.86067 -8.56832 -8.28026 -6.41203 -0.46620 -0.18564 0.16650 0.38100 0.70476 1.39307 1.42223 1.45287 1.46344 1.53892 1.74654 2.39366 2.63205 2.74151 3.06177 3.55865 3.75397 3.90181 4.00859 4.03717 4.18388 4.19614 4.22316 4.28483 4.32472 4.45534 4.48075 4.48970 4.66284 4.73956 4.82819 5.03301 5.03750 5.19139 5.24894 5.34680 5.36645 5.38355 5.44564 5.47757 5.48110 5.71787 5.76735 5.91738 6.05105 6.63277 6.72075 7.28280 8.84621 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002430 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.241456 B =11521.080462 C =12516.421207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.092 3.908 11 O -0.357 6.357 12 C 0.490 3.510 13 O -0.516 6.516 14 C -0.144 4.144 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.052 4.052 18 C -0.140 4.140 19 C -0.058 4.058 20 S 0.027 5.973 21 C -0.185 4.185 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.087 4.087 25 C -0.128 4.128 26 C -0.079 4.079 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.141 0.859 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -31.443 0.517 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.019 3.981 11 O -0.273 6.273 12 C 0.337 3.663 13 O -0.408 6.408 14 C -0.152 4.152 15 C -0.070 4.070 16 C -0.152 4.152 17 C -0.072 4.072 18 C -0.164 4.164 19 C -0.171 4.171 20 S 0.280 5.720 21 C -0.296 4.296 22 C -0.101 4.101 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.099 4.099 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.451 -30.282 0.432 30.771 hybrid contribution -0.333 0.464 0.082 0.576 sum 5.118 -29.818 0.513 30.258 Atomic orbital electron populations 1.70087 1.07755 1.28306 1.50298 1.25962 0.95880 1.03379 0.94044 0.85319 0.78511 0.77741 0.78706 1.19487 1.20225 1.18851 1.21351 0.93654 0.91203 1.52609 0.91822 1.18971 0.94266 0.90417 0.96765 1.23197 0.95174 0.78740 1.00958 1.86554 1.41850 1.15451 1.83473 1.21641 0.85732 0.85969 0.72997 1.90707 1.15580 1.87211 1.47286 1.18741 0.94890 0.87689 1.13844 1.21652 0.91560 1.00606 0.93199 1.21555 1.02255 0.90692 1.00742 1.21774 0.92473 1.00385 0.92535 1.21323 0.96332 0.94815 1.03950 1.22479 0.98671 0.95447 1.00509 1.86110 0.96762 1.00679 1.88430 1.22617 1.09571 1.00232 0.97197 1.21680 0.96514 0.95963 0.95896 1.21540 0.99477 0.93179 1.00634 1.21764 0.95589 1.01285 0.91892 1.21556 0.99720 0.94242 0.99265 1.21705 0.96085 0.94555 0.97599 0.92282 0.97402 0.97394 0.92262 0.92252 0.84125 0.81468 0.81092 0.84091 0.85760 0.83128 0.82466 0.82971 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.83 5.35 29.85 0.16 1.99 16 10 C 0.09 4.41 5.42 71.98 0.39 4.80 16 11 O -0.36 -15.59 9.47 -56.91 -0.54 -16.13 16 12 C 0.49 19.72 7.87 70.19 0.55 20.27 16 13 O -0.52 -22.49 13.56 19.72 0.27 -22.22 16 14 C -0.14 -4.65 5.89 -19.98 -0.12 -4.77 16 15 C -0.05 -1.32 9.61 22.53 0.22 -1.11 16 16 C -0.13 -2.35 10.02 22.25 0.22 -2.13 16 17 C -0.05 -0.81 10.03 22.30 0.22 -0.59 16 18 C -0.14 -2.94 9.35 22.38 0.21 -2.73 16 19 C -0.06 -1.65 6.16 23.01 0.14 -1.50 16 20 S 0.03 0.81 18.77 -56.49 -1.06 -0.25 16 21 C -0.19 -4.11 3.76 22.61 0.08 -4.02 16 22 C -0.08 -1.50 9.70 22.40 0.22 -1.28 16 23 C -0.13 -1.64 10.04 22.25 0.22 -1.41 16 24 C -0.09 -0.90 10.04 22.30 0.22 -0.67 16 25 C -0.13 -1.58 10.04 22.25 0.22 -1.35 16 26 C -0.08 -1.43 9.68 22.40 0.22 -1.22 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.14 3.75 7.61 -2.91 -0.02 3.73 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.14 2.59 6.26 -2.91 -0.02 2.57 16 36 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -72.96 362.35 5.91 -67.06 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.05 Total: 7.50 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.88 Total: -26.64 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.73 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.27 Total: -38.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.06 Total: -0.25 kcal Total: -72.96 5.91 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745403709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.318 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds