Wall clock time and date at job start Tue Mar 31 2020 14:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46762 * 149.28810 * 3 2 1 5 5 C 1.37101 * 119.99830 * 263.79655 * 4 3 2 6 6 H 1.07997 * 120.00168 * 142.47974 * 5 4 3 7 7 C 1.38947 * 119.99828 * 322.47585 * 5 4 3 8 8 N 1.31411 * 120.00039 * 157.59228 * 7 5 4 9 9 Si 1.86799 * 120.00316 * 337.59210 * 7 5 4 10 10 H 1.48497 * 109.47223 * 95.70224 * 9 7 5 11 11 H 1.48500 * 109.47424 * 215.70690 * 9 7 5 12 12 H 1.48507 * 109.47066 * 335.70776 * 9 7 5 13 13 C 1.34772 * 120.00248 * 83.79486 * 4 3 2 14 14 O 1.21290 * 120.00294 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99904 * 0.02562 * 13 4 3 16 16 O 1.42904 * 109.46871 * 180.02562 * 15 13 4 17 17 C 1.35752 * 116.99601 * 179.97438 * 16 15 13 18 18 C 1.39368 * 119.72964 * 0.25453 * 17 16 15 19 19 C 1.36458 * 120.42994 * 180.25502 * 18 17 16 20 20 C 1.39970 * 119.79317 * 359.74547 * 19 18 17 21 21 C 1.46429 * 120.98319 * 180.02562 * 20 19 18 22 22 C 1.35852 * 118.19472 * 179.97438 * 21 20 19 23 23 C 1.40998 * 119.82015 * 359.97438 * 22 21 20 24 24 O 1.21795 * 119.15270 * 179.97438 * 23 22 21 25 25 O 1.34225 * 121.68969 * 359.97438 * 23 22 21 26 26 C 1.35020 * 121.46785 * 0.02562 * 25 23 22 27 27 C 1.38509 * 119.72501 * 179.97438 * 17 16 15 28 28 H 1.08997 * 109.47428 * 29.29106 * 3 2 1 29 29 H 1.08997 * 109.47330 * 269.28152 * 3 2 1 30 30 H 0.96998 * 120.00078 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47060 * 60.00204 * 15 13 4 32 32 H 1.08996 * 109.46730 * 299.99846 * 15 13 4 33 33 H 1.08000 * 119.78690 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.10812 * 179.77088 * 19 18 17 35 35 H 1.08000 * 120.90628 * 0.02562 * 21 20 19 36 36 H 1.07996 * 120.08734 * 179.97438 * 22 21 20 37 37 H 1.08009 * 120.10713 * 0.03449 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1884 -0.7055 5 6 3.4451 1.1046 -2.0285 6 1 3.2248 1.9228 -2.6981 7 6 4.0829 -0.0330 -2.5079 8 7 4.0301 -0.3258 -3.7879 9 14 5.0152 -1.1463 -1.3329 10 1 4.1367 -2.2664 -0.9101 11 1 6.2171 -1.6901 -2.0148 12 1 5.4331 -0.3674 -0.1395 13 6 3.2008 2.3635 -0.0539 14 8 3.6042 3.3469 -0.6380 15 6 2.8172 2.4555 1.4006 16 8 3.0148 3.7936 1.8616 17 6 2.7137 4.0487 3.1605 18 6 2.2411 3.0214 3.9750 19 6 1.9292 3.2630 5.2813 20 6 2.0900 4.5497 5.8082 21 6 1.7640 4.8379 7.2064 22 6 1.9421 6.1065 7.6586 23 6 2.4296 7.1003 6.7853 24 8 2.5843 8.2337 7.2034 25 8 2.7276 6.8292 5.5049 26 6 2.5735 5.5896 4.9925 27 6 2.8845 5.3266 3.6669 28 1 2.9717 -0.8954 -0.5028 29 1 2.9713 0.0137 1.0275 30 1 4.4756 -1.1197 -4.1226 31 1 3.4374 1.7747 1.9837 32 1 1.7685 2.1823 1.5177 33 1 2.1165 2.0286 3.5685 34 1 1.5598 2.4638 5.9069 35 1 1.3928 4.0629 7.8605 36 1 1.7110 6.3530 8.6844 37 1 3.2550 6.1166 3.0303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749603734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:23 Heat of formation + Delta-G solvation = -39.627210 kcal Electronic energy + Delta-G solvation = -26217.782093 eV Core-core repulsion = 22121.137246 eV Total energy + Delta-G solvation = -4096.644847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14094 -40.42669 -39.18040 -38.19564 -36.96965 -36.42194 -34.94657 -34.48762 -32.46610 -31.41775 -29.83334 -28.63212 -27.98594 -25.15777 -24.62623 -24.04650 -23.23963 -20.27580 -19.45449 -18.81268 -18.54018 -17.75471 -17.43624 -17.03508 -16.91381 -16.32881 -16.15151 -15.81684 -15.64111 -15.28157 -14.47236 -14.41028 -14.20305 -14.11772 -13.93375 -13.68797 -13.50541 -13.11276 -12.85839 -12.71498 -12.67902 -12.34526 -12.32083 -12.08642 -11.80226 -11.59198 -11.46195 -11.06285 -10.71683 -10.59293 -10.36685 -10.20429 -9.46549 -9.17960 -8.99003 -8.36356 -8.29249 -6.67608 -4.31260 -0.06847 0.69149 1.24931 1.95141 2.53291 2.65512 2.74377 2.90825 2.96204 2.98604 3.05426 3.24281 3.36086 3.82769 3.85704 4.00158 4.04996 4.12162 4.23585 4.36986 4.52954 4.66394 4.78397 4.82677 4.95919 5.02423 5.05681 5.25806 5.27364 5.34018 5.40729 5.49485 5.67122 5.77631 5.83645 5.96724 6.88825 6.93338 7.17793 7.20878 7.72221 7.86389 8.10731 8.58361 8.92224 9.24966 10.43272 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.002620 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.802329 B =10684.682660 C =11094.995184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.200 3.800 3 C 0.175 3.825 4 N -0.455 5.455 5 C -0.326 4.326 6 H 0.113 0.887 7 C 0.065 3.935 8 N -0.846 5.846 9 Si 0.860 3.140 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.255 1.255 13 C 0.474 3.526 14 O -0.519 6.519 15 C 0.035 3.965 16 O -0.270 6.270 17 C 0.199 3.801 18 C -0.230 4.230 19 C -0.009 4.009 20 C -0.210 4.210 21 C 0.018 3.982 22 C -0.267 4.267 23 C 0.511 3.489 24 O -0.470 6.470 25 O -0.269 6.269 26 C 0.190 3.810 27 C -0.177 4.177 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.280 0.720 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -0.418 21.307 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.120 4.120 3 C 0.048 3.952 4 N -0.180 5.180 5 C -0.453 4.453 6 H 0.131 0.869 7 C -0.143 4.143 8 N -0.480 5.480 9 Si 0.685 3.315 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.179 1.179 13 C 0.261 3.739 14 O -0.396 6.396 15 C -0.044 4.044 16 O -0.180 6.180 17 C 0.151 3.849 18 C -0.249 4.249 19 C -0.027 4.027 20 C -0.211 4.211 21 C 0.000 4.000 22 C -0.286 4.286 23 C 0.360 3.640 24 O -0.358 6.358 25 O -0.180 6.180 26 C 0.145 3.855 27 C -0.196 4.196 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.547 0.835 20.714 21.032 hybrid contribution 0.771 -1.187 0.583 1.531 sum -2.776 -0.352 21.297 21.480 Atomic orbital electron populations 1.81106 1.13056 1.07974 1.08918 1.29994 0.95736 0.93426 0.92816 1.19651 0.81230 0.94431 0.99917 1.43491 1.57497 1.05774 1.11233 1.19052 1.39062 1.06249 0.80902 0.86948 1.25387 0.95861 0.97162 0.95939 1.69731 1.38812 1.25654 1.13803 0.87201 0.81192 0.80601 0.82486 1.19491 1.20261 1.17865 1.19668 0.82796 0.85236 0.86240 1.90667 1.46361 1.34882 1.67684 1.22928 1.02289 0.82350 0.96834 1.86218 1.79598 1.30284 1.21948 1.18903 0.89697 0.92559 0.83765 1.21154 1.08299 1.00091 0.95348 1.20651 0.93122 0.94436 0.94460 1.19003 1.12407 0.94866 0.94799 1.22786 0.88149 0.96548 0.92556 1.22470 1.09993 0.93684 1.02476 1.19237 0.76666 0.89484 0.78623 1.90984 1.50955 1.23091 1.70773 1.83556 1.73233 1.30146 1.31100 1.18517 0.94163 0.80864 0.91958 1.19495 1.10360 0.96735 0.93010 0.86232 0.87404 0.90977 0.88900 0.89698 0.83946 0.83912 0.83059 0.82110 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.73 18.54 42.15 0.78 -6.95 16 2 C 0.20 3.25 15.00 -20.76 -0.31 2.94 16 3 C 0.17 2.69 4.27 -6.83 -0.03 2.66 16 4 N -0.46 -9.22 2.15 -117.94 -0.25 -9.47 16 5 C -0.33 -8.10 9.36 -14.93 -0.14 -8.24 16 6 H 0.11 3.23 7.91 -52.49 -0.42 2.82 16 7 C 0.06 1.56 5.26 -17.47 -0.09 1.47 16 8 N -0.85 -21.99 13.96 55.50 0.77 -21.21 16 9 Si 0.86 16.55 25.05 -169.99 -4.26 12.30 16 10 H -0.27 -4.59 6.69 56.52 0.38 -4.21 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 13 C 0.47 9.45 7.64 -10.99 -0.08 9.37 16 14 O -0.52 -12.82 16.37 -14.36 -0.24 -13.06 16 15 C 0.03 0.48 3.82 36.01 0.14 0.62 16 16 O -0.27 -4.10 9.65 -38.87 -0.38 -4.47 16 17 C 0.20 2.39 6.69 -39.06 -0.26 2.13 16 18 C -0.23 -2.04 8.96 -39.80 -0.36 -2.40 16 19 C -0.01 -0.06 9.78 -39.57 -0.39 -0.45 16 20 C -0.21 -1.81 5.87 -105.01 -0.62 -2.43 16 21 C 0.02 0.11 10.12 -37.14 -0.38 -0.26 16 22 C -0.27 -2.19 9.93 -39.39 -0.39 -2.58 16 23 C 0.51 6.28 7.89 31.78 0.25 6.53 16 24 O -0.47 -7.25 17.91 -19.60 -0.35 -7.60 16 25 O -0.27 -3.45 9.82 -20.79 -0.20 -3.65 16 26 C 0.19 2.14 6.76 -38.48 -0.26 1.88 16 27 C -0.18 -2.12 9.94 -39.32 -0.39 -2.51 16 28 H 0.12 1.92 3.61 -51.93 -0.19 1.73 16 29 H 0.11 1.08 6.70 -51.93 -0.35 0.73 16 30 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.09 0.93 6.91 -51.93 -0.36 0.57 16 32 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 33 H 0.14 0.97 6.24 -52.49 -0.33 0.64 16 34 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -33.15 334.53 -5.24 -38.39 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -2.85 Total: 1.95 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -3.31 Total: 8.74 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 1.30 Total: -37.63 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.17 Total: -28.78 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -4.26 Total: 12.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.15 -5.24 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.241 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds