Wall clock time and date at job start Tue Mar 31 2020 14:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46762 * 149.28810 * 3 2 1 5 5 C 1.37101 * 119.99830 * 263.79655 * 4 3 2 6 6 H 1.07997 * 120.00168 * 142.47974 * 5 4 3 7 7 C 1.38947 * 119.99828 * 322.47585 * 5 4 3 8 8 N 1.31411 * 120.00039 * 157.59228 * 7 5 4 9 9 Si 1.86799 * 120.00316 * 337.59210 * 7 5 4 10 10 H 1.48497 * 109.47223 * 95.70224 * 9 7 5 11 11 H 1.48500 * 109.47424 * 215.70690 * 9 7 5 12 12 H 1.48507 * 109.47066 * 335.70776 * 9 7 5 13 13 C 1.34772 * 120.00248 * 83.79486 * 4 3 2 14 14 O 1.21290 * 120.00294 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99904 * 0.02562 * 13 4 3 16 16 O 1.42904 * 109.46871 * 180.02562 * 15 13 4 17 17 C 1.35752 * 116.99601 * 179.97438 * 16 15 13 18 18 C 1.39368 * 119.72964 * 0.25453 * 17 16 15 19 19 C 1.36458 * 120.42994 * 180.25502 * 18 17 16 20 20 C 1.39970 * 119.79317 * 359.74547 * 19 18 17 21 21 C 1.46429 * 120.98319 * 180.02562 * 20 19 18 22 22 C 1.35852 * 118.19472 * 179.97438 * 21 20 19 23 23 C 1.40998 * 119.82015 * 359.97438 * 22 21 20 24 24 O 1.21795 * 119.15270 * 179.97438 * 23 22 21 25 25 O 1.34225 * 121.68969 * 359.97438 * 23 22 21 26 26 C 1.35020 * 121.46785 * 0.02562 * 25 23 22 27 27 C 1.38509 * 119.72501 * 179.97438 * 17 16 15 28 28 H 1.08997 * 109.47428 * 29.29106 * 3 2 1 29 29 H 1.08997 * 109.47330 * 269.28152 * 3 2 1 30 30 H 0.96998 * 120.00078 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47060 * 60.00204 * 15 13 4 32 32 H 1.08996 * 109.46730 * 299.99846 * 15 13 4 33 33 H 1.08000 * 119.78690 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.10812 * 179.77088 * 19 18 17 35 35 H 1.08000 * 120.90628 * 0.02562 * 21 20 19 36 36 H 1.07996 * 120.08734 * 179.97438 * 22 21 20 37 37 H 1.08009 * 120.10713 * 0.03449 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1884 -0.7055 5 6 3.4451 1.1046 -2.0285 6 1 3.2248 1.9228 -2.6981 7 6 4.0829 -0.0330 -2.5079 8 7 4.0301 -0.3258 -3.7879 9 14 5.0152 -1.1463 -1.3329 10 1 4.1367 -2.2664 -0.9101 11 1 6.2171 -1.6901 -2.0148 12 1 5.4331 -0.3674 -0.1395 13 6 3.2008 2.3635 -0.0539 14 8 3.6042 3.3469 -0.6380 15 6 2.8172 2.4555 1.4006 16 8 3.0148 3.7936 1.8616 17 6 2.7137 4.0487 3.1605 18 6 2.2411 3.0214 3.9750 19 6 1.9292 3.2630 5.2813 20 6 2.0900 4.5497 5.8082 21 6 1.7640 4.8379 7.2064 22 6 1.9421 6.1065 7.6586 23 6 2.4296 7.1003 6.7853 24 8 2.5843 8.2337 7.2034 25 8 2.7276 6.8292 5.5049 26 6 2.5735 5.5896 4.9925 27 6 2.8845 5.3266 3.6669 28 1 2.9717 -0.8954 -0.5028 29 1 2.9713 0.0137 1.0275 30 1 4.4756 -1.1197 -4.1226 31 1 3.4374 1.7747 1.9837 32 1 1.7685 2.1823 1.5177 33 1 2.1165 2.0286 3.5685 34 1 1.5598 2.4638 5.9069 35 1 1.3928 4.0629 7.8605 36 1 1.7110 6.3530 8.6844 37 1 3.2550 6.1166 3.0303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749603734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:22 Heat of formation + Delta-G solvation = -61.903957 kcal Electronic energy + Delta-G solvation = -26218.748085 eV Core-core repulsion = 22121.137246 eV Total energy + Delta-G solvation = -4097.610839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96524 -41.49949 -40.47209 -39.20254 -38.00081 -37.67892 -36.48868 -35.19599 -34.24062 -32.17156 -30.75307 -29.76832 -29.30825 -26.60198 -25.37488 -25.02818 -23.95760 -21.50399 -20.58789 -20.30414 -19.27326 -18.66318 -18.61370 -18.22914 -17.92434 -17.49537 -17.33827 -17.14976 -16.44876 -16.31614 -15.65538 -15.49985 -15.20992 -15.03240 -14.90143 -14.72246 -14.59539 -14.42755 -14.31116 -14.00568 -13.84034 -13.47024 -13.26395 -13.13663 -12.92059 -12.70774 -12.44107 -12.30255 -12.13495 -11.77319 -11.44370 -11.12655 -11.07006 -10.58455 -10.03874 -9.93879 -9.13094 -8.49689 -6.21845 -0.73410 -0.05203 0.53315 1.07572 1.27382 1.39554 1.41989 1.57258 1.73192 1.74821 1.78272 1.95086 2.24286 2.65580 2.77539 2.85973 3.13949 3.16580 3.42421 3.49551 3.55635 3.72464 3.91428 3.95657 4.04481 4.14834 4.18091 4.33721 4.44526 4.62803 4.69970 4.76439 5.07053 5.13064 5.18072 5.33394 5.43793 5.99350 6.06963 6.11793 6.37601 6.40115 6.49242 6.83259 7.10774 7.61905 8.66749 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.002620 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.802329 B =10684.682660 C =11094.995184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.217 3.783 3 C 0.171 3.829 4 N -0.464 5.464 5 C -0.346 4.346 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.906 5.906 9 Si 0.932 3.068 10 H -0.218 1.218 11 H -0.292 1.292 12 H -0.224 1.224 13 C 0.466 3.534 14 O -0.587 6.587 15 C 0.045 3.955 16 O -0.310 6.310 17 C 0.181 3.819 18 C -0.225 4.225 19 C 0.015 3.985 20 C -0.209 4.209 21 C 0.055 3.945 22 C -0.283 4.283 23 C 0.499 3.501 24 O -0.523 6.523 25 O -0.296 6.296 26 C 0.166 3.834 27 C -0.203 4.203 28 H 0.120 0.880 29 H 0.182 0.818 30 H 0.283 0.717 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.184 0.816 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -5.179 26.691 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.101 4.101 3 C 0.046 3.954 4 N -0.188 5.188 5 C -0.474 4.474 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.542 5.542 9 Si 0.751 3.249 10 H -0.142 1.142 11 H -0.219 1.219 12 H -0.146 1.146 13 C 0.255 3.745 14 O -0.468 6.468 15 C -0.033 4.033 16 O -0.222 6.222 17 C 0.134 3.866 18 C -0.243 4.243 19 C -0.003 4.003 20 C -0.210 4.210 21 C 0.037 3.963 22 C -0.302 4.302 23 C 0.352 3.648 24 O -0.416 6.416 25 O -0.209 6.209 26 C 0.122 3.878 27 C -0.223 4.223 28 H 0.138 0.862 29 H 0.199 0.801 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.194 0.806 34 H 0.216 0.784 35 H 0.227 0.773 36 H 0.201 0.799 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.330 -3.959 26.124 26.774 hybrid contribution 0.946 0.386 -1.219 1.591 sum -3.384 -3.573 24.904 25.386 Atomic orbital electron populations 1.81141 1.14064 1.08787 1.10099 1.30073 0.95752 0.92519 0.91804 1.20109 0.80374 0.91808 1.03084 1.43482 1.57683 1.07748 1.09856 1.18531 1.41168 1.04873 0.82780 0.94136 1.26371 0.95831 0.98975 0.98051 1.69883 1.40247 1.27145 1.16907 0.86089 0.79044 0.79429 0.80290 1.14229 1.21921 1.14564 1.20814 0.80910 0.83932 0.88808 1.90635 1.49008 1.37234 1.69905 1.22903 1.04778 0.83260 0.92315 1.86153 1.80772 1.31128 1.24122 1.19048 0.91238 0.93289 0.82995 1.21547 1.06868 1.00260 0.95639 1.21254 0.90389 0.94510 0.94100 1.19445 1.11054 0.94803 0.95733 1.23320 0.84822 0.96671 0.91486 1.22551 1.11356 0.93571 1.02702 1.20032 0.76112 0.90007 0.78616 1.90940 1.53792 1.25289 1.71574 1.83461 1.73531 1.31789 1.32077 1.18766 0.95695 0.81169 0.92193 1.19489 1.11984 0.97104 0.93692 0.86221 0.80084 0.90684 0.83339 0.86947 0.80605 0.78366 0.77265 0.79895 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.27 18.54 20.00 0.37 -14.90 16 2 C 0.22 6.28 15.00 89.44 1.34 7.63 16 3 C 0.17 4.44 4.27 84.57 0.36 4.80 16 4 N -0.46 -18.27 2.15 -645.43 -1.39 -19.66 16 5 C -0.35 -18.02 9.36 84.04 0.79 -17.23 16 6 H 0.04 2.61 7.91 -2.91 -0.02 2.59 16 7 C 0.01 0.55 5.26 84.93 0.45 0.99 16 8 N -0.91 -49.39 13.96 21.66 0.30 -49.08 16 9 Si 0.93 31.85 25.05 68.60 1.72 33.57 16 10 H -0.22 -5.80 6.69 99.48 0.67 -5.14 16 11 H -0.29 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.22 -6.50 7.11 99.48 0.71 -5.79 16 13 C 0.47 18.35 7.64 87.66 0.67 19.02 16 14 O -0.59 -30.70 16.37 15.98 0.26 -30.43 16 15 C 0.04 1.08 3.82 71.24 0.27 1.35 16 16 O -0.31 -9.09 9.65 -71.73 -0.69 -9.78 16 17 C 0.18 4.00 6.69 22.61 0.15 4.15 16 18 C -0.22 -2.66 8.96 22.13 0.20 -2.46 16 19 C 0.01 0.10 9.78 22.27 0.22 0.32 16 20 C -0.21 -2.68 5.87 -20.12 -0.12 -2.80 16 21 C 0.05 0.38 10.12 23.85 0.24 0.62 16 22 C -0.28 -3.88 9.93 22.39 0.22 -3.66 16 23 C 0.50 12.59 7.89 68.50 0.54 13.13 16 24 O -0.52 -17.25 17.91 18.97 0.34 -16.91 16 25 O -0.30 -8.08 9.82 14.69 0.14 -7.93 16 26 C 0.17 3.67 6.76 22.98 0.16 3.83 16 27 C -0.20 -5.05 9.94 22.44 0.22 -4.82 16 28 H 0.12 3.19 3.61 -2.39 -0.01 3.18 16 29 H 0.18 2.03 6.70 -2.39 -0.02 2.02 16 30 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.15 1.87 6.91 -2.39 -0.02 1.86 16 32 H 0.11 2.09 6.99 -2.39 -0.02 2.08 16 33 H 0.18 0.89 6.24 -2.91 -0.02 0.87 16 34 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 35 H 0.21 -0.89 8.06 -2.91 -0.02 -0.91 16 36 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -89.62 334.53 7.88 -81.75 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.12 Total: 8.51 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 5.71 Total: 24.87 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -0.72 Total: -83.64 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: 0.05 Total: -65.06 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 1.72 Total: 33.57 kcal Total: -89.62 7.88 -81.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.842 kcal (2) G-P(sol) polarization free energy of solvation -89.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds