Wall clock time and date at job start Tue Mar 31 2020 14:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46817 * 299.99852 * 3 2 1 6 6 H 1.48499 * 109.47016 * 59.99770 * 3 2 1 7 7 C 1.38800 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00160 * 179.97438 * 7 2 1 9 9 O 1.34859 * 119.99632 * 0.02562 * 7 2 1 10 10 C 1.34784 * 116.99618 * 179.97438 * 9 7 2 11 11 O 1.21541 * 120.00249 * 359.97438 * 10 9 7 12 12 C 1.47346 * 119.99571 * 179.97438 * 10 9 7 13 13 C 1.40077 * 120.61021 * 0.24702 * 12 10 9 14 14 C 1.38303 * 118.33908 * 180.26745 * 13 12 10 15 15 C 1.38388 * 119.47193 * 359.75231 * 14 13 12 16 16 N 1.31875 * 121.20795 * 359.97438 * 15 14 13 17 17 C 1.32240 * 121.80563 * 0.02562 * 16 15 14 18 18 O 1.35428 * 119.80615 * 179.97438 * 17 16 15 19 19 C 1.35664 * 118.00107 * 5.31572 * 18 17 16 20 20 C 1.38709 * 120.15460 * 266.69371 * 19 18 17 21 21 C 1.38060 * 120.08463 * 179.97438 * 20 19 18 22 22 C 1.38542 * 120.38884 * 0.02584 * 21 20 19 23 23 C 1.37794 * 120.30033 * 359.71531 * 22 21 20 24 24 C 1.39698 * 119.91155 * 0.53856 * 23 22 21 25 25 C 1.47544 * 120.19038 * 179.74206 * 24 23 22 26 26 N 1.34773 * 120.00342 * 359.72046 * 25 24 23 27 27 O 1.21595 * 119.99570 * 179.72301 * 25 24 23 28 28 H 0.96996 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.83006 * 359.97438 * 13 12 10 30 30 H 1.08006 * 120.26413 * 179.72405 * 14 13 12 31 31 H 1.08008 * 119.39783 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.95770 * 359.97438 * 20 19 18 33 33 H 1.08007 * 119.80299 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.84549 * 179.97438 * 22 21 20 35 35 H 1.08010 * 120.04645 * 180.30176 * 23 22 21 36 36 H 0.97000 * 120.00068 * 179.97438 * 26 25 24 37 37 H 0.96991 * 120.00104 * 359.73059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0083 -1.2020 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3699 0.0005 10 6 2.0680 -3.5003 0.0005 11 8 3.2818 -3.4367 0.0001 12 6 1.3990 -4.8131 0.0011 13 6 0.0010 -4.9013 -0.0035 14 6 -0.5776 -6.1574 0.0029 15 6 0.2318 -7.2799 0.0084 16 7 1.5464 -7.1744 0.0072 17 6 2.1512 -5.9984 0.0011 18 8 3.5041 -5.9373 0.0006 19 6 4.1942 -7.1006 -0.1046 20 6 4.6134 -7.7677 1.0370 21 6 5.3152 -8.9517 0.9282 22 6 5.6063 -9.4819 -0.3181 23 6 5.1930 -8.8352 -1.4626 24 6 4.4868 -7.6336 -1.3673 25 6 4.0462 -6.9331 -2.5888 26 7 4.3297 -7.4492 -3.8011 27 8 3.4273 -5.8901 -2.5017 28 1 -0.4850 0.8400 0.0004 29 1 -0.6097 -4.0105 -0.0072 30 1 -1.6526 -6.2615 0.0041 31 1 -0.2213 -8.2603 0.0130 32 1 4.3906 -7.3605 2.0121 33 1 5.6397 -9.4672 1.8201 34 1 6.1562 -10.4084 -0.3930 35 1 5.4180 -9.2547 -2.4321 36 1 4.0397 -6.9888 -4.6041 37 1 4.8268 -8.2792 -3.8707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753513051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:35 Heat of formation + Delta-G solvation = -64.706511 kcal Electronic energy + Delta-G solvation = -27537.701752 eV Core-core repulsion = 23439.969385 eV Total energy + Delta-G solvation = -4097.732367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07798 -39.76849 -38.53669 -38.23890 -37.39092 -34.93271 -33.76982 -32.39628 -31.91555 -31.10108 -31.01374 -29.59089 -25.65841 -24.47063 -23.95170 -23.60838 -22.03976 -20.70477 -20.45583 -18.93683 -17.85398 -17.61082 -16.95399 -16.86981 -16.76211 -15.80537 -15.47108 -15.03610 -14.95005 -14.66479 -14.51952 -14.42121 -14.22046 -13.82308 -13.68937 -13.48602 -13.21338 -12.51558 -12.48450 -12.35871 -11.93972 -11.84646 -11.50702 -11.23905 -11.17161 -10.37785 -10.35071 -9.87157 -9.74078 -9.67386 -9.58548 -9.48047 -9.18368 -8.90102 -8.78444 -8.50501 -8.21706 -6.36254 -3.97393 0.65912 1.03457 1.13931 1.60235 2.85350 3.18177 3.20928 3.24244 3.32497 3.45123 3.64116 3.87097 3.97888 4.37078 4.40249 4.55237 4.66557 4.74551 4.78282 5.12292 5.15311 5.18473 5.20830 5.24524 5.34219 5.60494 5.63171 5.74911 5.96015 6.16464 6.18424 6.22074 6.41869 6.52726 6.75678 6.77678 6.96306 7.29011 7.47413 7.69725 8.03816 8.09485 8.31815 8.85577 9.13523 9.96796 10.82368 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003805 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.605569 B = 7357.365925 C = 7927.444553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.367 4.367 8 H 0.097 0.903 9 O -0.213 6.213 10 C 0.443 3.557 11 O -0.524 6.524 12 C -0.144 4.144 13 C -0.001 4.001 14 C -0.220 4.220 15 C 0.143 3.857 16 N -0.544 5.544 17 C 0.378 3.622 18 O -0.200 6.200 19 C 0.162 3.838 20 C -0.125 4.125 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.143 4.143 25 C 0.552 3.448 26 N -0.856 5.856 27 O -0.501 6.501 28 H 0.268 0.732 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.404 0.596 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -21.780 -2.343 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.443 4.443 8 H 0.115 0.885 9 O -0.121 6.121 10 C 0.289 3.711 11 O -0.420 6.420 12 C -0.148 4.148 13 C -0.026 4.026 14 C -0.241 4.241 15 C -0.013 4.013 16 N -0.268 5.268 17 C 0.201 3.799 18 O -0.104 6.104 19 C 0.118 3.882 20 C -0.144 4.144 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.097 4.097 24 C -0.147 4.147 25 C 0.337 3.663 26 N -0.422 5.422 27 O -0.375 6.375 28 H 0.078 0.922 29 H 0.177 0.823 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.235 0.765 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.773 -21.398 -2.074 22.260 hybrid contribution 0.028 1.071 -0.491 1.179 sum 5.801 -20.326 -2.565 21.293 Atomic orbital electron populations 1.69984 1.05981 1.27526 1.46718 1.25331 0.95843 0.98772 0.96519 0.85608 0.79574 0.80036 0.78040 1.18888 1.20199 1.20199 1.21335 0.92564 0.79733 1.50692 0.88526 1.83884 1.39089 1.13108 1.76027 1.20210 0.85975 0.84810 0.80059 1.90692 1.14500 1.87368 1.49425 1.19437 0.93274 0.91130 1.10994 1.21953 0.92675 0.99114 0.88882 1.21921 1.01556 0.92842 1.07741 1.22438 0.87397 0.98972 0.92512 1.67365 1.13392 1.25259 1.20761 1.19597 0.82635 0.88521 0.89150 1.84810 1.13677 1.26521 1.85348 1.18700 0.92614 0.85263 0.91604 1.21353 0.99783 0.94951 0.98276 1.21177 0.96107 0.94585 0.98061 1.21073 1.01163 1.00591 0.92138 1.21127 0.96345 0.93098 0.99142 1.20220 1.04296 0.96912 0.93252 1.18140 0.79738 0.84758 0.83642 1.43704 1.61406 1.29078 1.07976 1.91015 1.38145 1.21740 1.86572 0.92174 0.82343 0.84235 0.82504 0.84611 0.84926 0.85105 0.85288 0.76465 0.77510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 13.67 55.49 0.76 -24.98 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.03 16 3 Si 0.94 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.37 -11.38 9.65 30.94 0.30 -11.08 16 8 H 0.10 3.04 6.86 -52.49 -0.36 2.68 16 9 O -0.21 -6.47 9.07 -21.79 -0.20 -6.67 16 10 C 0.44 12.52 7.83 34.44 0.27 12.79 16 11 O -0.52 -15.95 14.44 -26.59 -0.38 -16.33 16 12 C -0.14 -3.36 5.90 -104.70 -0.62 -3.98 16 13 C 0.00 -0.02 9.73 -38.87 -0.38 -0.39 16 14 C -0.22 -3.27 10.09 -39.50 -0.40 -3.66 16 15 C 0.14 2.09 11.17 -17.48 -0.20 1.89 16 16 N -0.54 -9.75 9.31 -12.95 -0.12 -9.87 16 17 C 0.38 8.11 6.19 -16.57 -0.10 8.01 16 18 O -0.20 -4.45 6.67 -32.33 -0.22 -4.66 16 19 C 0.16 2.84 4.97 -38.69 -0.19 2.65 16 20 C -0.13 -1.72 9.98 -39.47 -0.39 -2.12 16 21 C -0.08 -0.80 10.03 -39.53 -0.40 -1.20 16 22 C -0.13 -1.15 10.02 -39.63 -0.40 -1.54 16 23 C -0.08 -0.79 9.53 -39.20 -0.37 -1.16 16 24 C -0.14 -2.15 5.89 -104.84 -0.62 -2.76 16 25 C 0.55 9.10 8.03 -12.47 -0.10 9.00 16 26 N -0.86 -9.07 8.82 30.46 0.27 -8.80 16 27 O -0.50 -11.19 15.01 -16.59 -0.25 -11.44 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.16 3.08 7.70 -52.49 -0.40 2.68 16 30 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.80 6.41 -52.48 -0.34 0.46 16 36 H 0.40 3.90 8.93 -40.82 -0.36 3.53 16 37 H 0.40 2.61 6.86 -40.82 -0.28 2.33 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -40.75 337.72 -6.76 -47.51 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.99 Total: 5.65 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -3.69 Total: 7.48 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.91 Total: -43.65 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.05 Total: -39.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -40.75 -6.76 -47.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753513051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.196 kcal (2) G-P(sol) polarization free energy of solvation -40.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds