Wall clock time and date at job start Tue Mar 31 2020 14:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46817 * 299.99852 * 3 2 1 6 6 H 1.48499 * 109.47016 * 59.99770 * 3 2 1 7 7 C 1.38800 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00160 * 179.97438 * 7 2 1 9 9 O 1.34859 * 119.99632 * 0.02562 * 7 2 1 10 10 C 1.34784 * 116.99618 * 179.97438 * 9 7 2 11 11 O 1.21541 * 120.00249 * 359.97438 * 10 9 7 12 12 C 1.47346 * 119.99571 * 179.97438 * 10 9 7 13 13 C 1.40077 * 120.61021 * 0.24702 * 12 10 9 14 14 C 1.38303 * 118.33908 * 180.26745 * 13 12 10 15 15 C 1.38388 * 119.47193 * 359.75231 * 14 13 12 16 16 N 1.31875 * 121.20795 * 359.97438 * 15 14 13 17 17 C 1.32240 * 121.80563 * 0.02562 * 16 15 14 18 18 O 1.35428 * 119.80615 * 179.97438 * 17 16 15 19 19 C 1.35664 * 118.00107 * 5.31572 * 18 17 16 20 20 C 1.38709 * 120.15460 * 266.69371 * 19 18 17 21 21 C 1.38060 * 120.08463 * 179.97438 * 20 19 18 22 22 C 1.38542 * 120.38884 * 0.02584 * 21 20 19 23 23 C 1.37794 * 120.30033 * 359.71531 * 22 21 20 24 24 C 1.39698 * 119.91155 * 0.53856 * 23 22 21 25 25 C 1.47544 * 120.19038 * 179.74206 * 24 23 22 26 26 N 1.34773 * 120.00342 * 359.72046 * 25 24 23 27 27 O 1.21595 * 119.99570 * 179.72301 * 25 24 23 28 28 H 0.96996 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.83006 * 359.97438 * 13 12 10 30 30 H 1.08006 * 120.26413 * 179.72405 * 14 13 12 31 31 H 1.08008 * 119.39783 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.95770 * 359.97438 * 20 19 18 33 33 H 1.08007 * 119.80299 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.84549 * 179.97438 * 22 21 20 35 35 H 1.08010 * 120.04645 * 180.30176 * 23 22 21 36 36 H 0.97000 * 120.00068 * 179.97438 * 26 25 24 37 37 H 0.96991 * 120.00104 * 359.73059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0083 -1.2020 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3699 0.0005 10 6 2.0680 -3.5003 0.0005 11 8 3.2818 -3.4367 0.0001 12 6 1.3990 -4.8131 0.0011 13 6 0.0010 -4.9013 -0.0035 14 6 -0.5776 -6.1574 0.0029 15 6 0.2318 -7.2799 0.0084 16 7 1.5464 -7.1744 0.0072 17 6 2.1512 -5.9984 0.0011 18 8 3.5041 -5.9373 0.0006 19 6 4.1942 -7.1006 -0.1046 20 6 4.6134 -7.7677 1.0370 21 6 5.3152 -8.9517 0.9282 22 6 5.6063 -9.4819 -0.3181 23 6 5.1930 -8.8352 -1.4626 24 6 4.4868 -7.6336 -1.3673 25 6 4.0462 -6.9331 -2.5888 26 7 4.3297 -7.4492 -3.8011 27 8 3.4273 -5.8901 -2.5017 28 1 -0.4850 0.8400 0.0004 29 1 -0.6097 -4.0105 -0.0072 30 1 -1.6526 -6.2615 0.0041 31 1 -0.2213 -8.2603 0.0130 32 1 4.3906 -7.3605 2.0121 33 1 5.6397 -9.4672 1.8201 34 1 6.1562 -10.4084 -0.3930 35 1 5.4180 -9.2547 -2.4321 36 1 4.0397 -6.9888 -4.6041 37 1 4.8268 -8.2792 -3.8707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753513051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:34 Heat of formation + Delta-G solvation = -97.520547 kcal Electronic energy + Delta-G solvation = -27539.124675 eV Core-core repulsion = 23439.969385 eV Total energy + Delta-G solvation = -4099.155290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39642 -41.19610 -40.44776 -39.57106 -38.53691 -37.17227 -34.91901 -34.40438 -33.69182 -32.26003 -32.00601 -30.75777 -27.81220 -25.67876 -25.54572 -24.78742 -23.16862 -22.36883 -21.79357 -20.15720 -19.87933 -18.99894 -18.76540 -18.13833 -18.02785 -17.05508 -16.97589 -16.50041 -16.44229 -16.18324 -16.04804 -15.96788 -15.73172 -15.12758 -15.03312 -14.95597 -14.50902 -14.17002 -13.69110 -13.52524 -13.45612 -13.26299 -13.19409 -12.88643 -12.42861 -12.23229 -12.22376 -12.04437 -11.23241 -11.14085 -11.03205 -10.79487 -10.77450 -10.71888 -10.08719 -9.83628 -9.63954 -8.58600 -6.35168 -0.40125 -0.32894 0.13030 0.20296 1.29561 1.33055 1.48802 1.80184 1.81641 1.97102 2.07562 2.45004 2.61008 2.72260 2.84477 3.00123 3.28582 3.68841 3.77862 3.82080 3.91688 4.03163 4.04717 4.29359 4.32176 4.37839 4.59606 4.75707 4.79921 4.97648 5.07402 5.14821 5.15716 5.27474 5.35386 5.43471 5.74771 5.79782 5.80193 6.36594 6.40988 6.61032 6.71230 6.86180 7.27413 7.72436 8.62906 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003805 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.605569 B = 7357.365925 C = 7927.444553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.270 1.270 5 H -0.256 1.256 6 H -0.253 1.253 7 C -0.420 4.420 8 H 0.074 0.926 9 O -0.236 6.236 10 C 0.441 3.559 11 O -0.562 6.562 12 C -0.204 4.204 13 C -0.005 4.005 14 C -0.202 4.202 15 C 0.165 3.835 16 N -0.543 5.543 17 C 0.377 3.623 18 O -0.238 6.238 19 C 0.109 3.891 20 C -0.144 4.144 21 C -0.066 4.066 22 C -0.113 4.113 23 C -0.064 4.064 24 C -0.169 4.169 25 C 0.543 3.457 26 N -0.826 5.826 27 O -0.577 6.577 28 H 0.281 0.719 29 H 0.145 0.855 30 H 0.191 0.809 31 H 0.219 0.781 32 H 0.125 0.875 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.173 0.827 36 H 0.410 0.590 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -26.004 -2.711 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.202 4.202 3 Si 0.838 3.162 4 H -0.194 1.194 5 H -0.180 1.180 6 H -0.177 1.177 7 C -0.496 4.496 8 H 0.092 0.908 9 O -0.145 6.145 10 C 0.290 3.710 11 O -0.459 6.459 12 C -0.208 4.208 13 C -0.031 4.031 14 C -0.221 4.221 15 C 0.008 3.992 16 N -0.267 5.267 17 C 0.201 3.799 18 O -0.142 6.142 19 C 0.066 3.934 20 C -0.163 4.163 21 C -0.084 4.084 22 C -0.130 4.130 23 C -0.082 4.082 24 C -0.173 4.173 25 C 0.330 3.670 26 N -0.392 5.392 27 O -0.456 6.456 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.209 0.791 31 H 0.235 0.765 32 H 0.143 0.857 33 H 0.189 0.811 34 H 0.200 0.800 35 H 0.190 0.810 36 H 0.242 0.758 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.055 -25.699 -2.476 26.518 hybrid contribution -0.024 1.984 -0.402 2.024 sum 6.031 -23.715 -2.878 24.638 Atomic orbital electron populations 1.70052 1.07477 1.29455 1.46509 1.26558 0.97036 1.02031 0.94584 0.84567 0.77519 0.74503 0.79645 1.19412 1.17987 1.17672 1.21471 0.92096 0.81182 1.54811 0.90801 1.83902 1.39583 1.13690 1.77302 1.21258 0.85983 0.86070 0.77739 1.90619 1.16229 1.88153 1.50922 1.19380 0.95266 0.89172 1.17004 1.22008 0.90955 1.01085 0.89052 1.22400 1.04025 0.90494 1.05225 1.23582 0.86235 1.01432 0.87941 1.67561 1.14941 1.23169 1.21008 1.19682 0.83111 0.88706 0.88393 1.84745 1.14294 1.30001 1.85155 1.19310 0.94538 0.85568 0.94019 1.21464 1.01368 0.96601 0.96844 1.21664 0.93711 0.92507 1.00510 1.21693 0.99214 1.01446 0.90663 1.21642 0.93927 0.90639 1.02009 1.20309 1.06488 0.98923 0.91538 1.18621 0.78873 0.84039 0.85494 1.43445 1.59944 1.29363 1.06497 1.90991 1.41866 1.25087 1.87704 0.90951 0.83684 0.79142 0.76480 0.85655 0.81116 0.79958 0.80969 0.75841 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.56 13.67 21.63 0.30 -55.26 16 2 C 0.00 -0.11 5.50 84.89 0.47 0.35 16 3 Si 1.02 46.76 29.55 68.60 2.03 48.78 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.42 -28.32 9.65 67.95 0.66 -27.67 16 8 H 0.07 5.15 6.86 -2.91 -0.02 5.13 16 9 O -0.24 -15.78 9.07 10.77 0.10 -15.68 16 10 C 0.44 27.72 7.83 70.22 0.55 28.27 16 11 O -0.56 -38.19 14.44 26.68 0.39 -37.81 16 12 C -0.20 -10.37 5.90 -19.91 -0.12 -10.49 16 13 C -0.01 -0.22 9.73 22.73 0.22 0.00 16 14 C -0.20 -5.59 10.09 22.32 0.23 -5.37 16 15 C 0.16 4.33 11.17 84.72 0.95 5.28 16 16 N -0.54 -19.38 9.31 -307.88 -2.87 -22.25 16 17 C 0.38 17.31 6.19 85.15 0.53 17.84 16 18 O -0.24 -11.57 6.67 1.48 0.01 -11.56 16 19 C 0.11 3.98 4.97 22.85 0.11 4.09 16 20 C -0.14 -4.00 9.98 22.34 0.22 -3.78 16 21 C -0.07 -1.08 10.03 22.30 0.22 -0.85 16 22 C -0.11 -1.35 10.02 22.24 0.22 -1.13 16 23 C -0.06 -1.04 9.53 22.52 0.21 -0.82 16 24 C -0.17 -5.03 5.89 -20.01 -0.12 -5.15 16 25 C 0.54 18.49 8.03 86.70 0.70 19.19 16 26 N -0.83 -16.69 8.82 -175.81 -1.55 -18.24 16 27 O -0.58 -27.97 15.01 16.90 0.25 -27.72 16 28 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.15 6.13 7.70 -2.91 -0.02 6.11 16 30 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.22 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.17 1.15 6.41 -2.91 -0.02 1.13 16 36 H 0.41 7.73 8.93 -92.71 -0.83 6.91 16 37 H 0.42 4.25 6.86 -92.71 -0.64 3.62 16 Total: -1.00 -105.70 337.72 3.41 -102.29 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.29 Total: 17.68 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 5.05 Total: 19.77 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -4.12 Total: -95.75 kcal Atomic # 8 Polarization: -93.52 SS G_CDS: 0.75 Total: -92.78 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -105.70 3.41 -102.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753513051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.773 kcal (2) G-P(sol) polarization free energy of solvation -105.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds