Wall clock time and date at job start Tue Mar 31 2020 14:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46966 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.47125 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00528 * 3 2 1 7 7 C 1.38652 * 120.00529 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99601 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.35762 * 116.99861 * 185.07612 * 9 7 2 11 11 C 1.39060 * 119.98339 * 174.47416 * 10 9 7 12 12 C 1.38251 * 120.29096 * 180.02562 * 11 10 9 13 13 C 1.37957 * 120.24794 * 0.02562 * 12 11 10 14 14 C 1.39921 * 119.96358 * 359.97438 * 13 12 11 15 15 C 1.47131 * 120.14498 * 179.97438 * 14 13 12 16 16 C 1.35009 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.46306 * 119.99714 * 179.97438 * 16 15 14 18 18 O 1.21762 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.47620 * 119.99907 * 180.27075 * 17 16 15 20 20 C 1.39742 * 120.18327 * 359.73397 * 19 17 16 21 21 C 1.37971 * 119.88443 * 179.97438 * 20 19 17 22 22 F 1.35101 * 119.87470 * 179.97438 * 21 20 19 23 23 C 1.38751 * 120.24938 * 0.02562 * 21 20 19 24 24 C 1.38077 * 120.36929 * 359.97438 * 23 21 20 25 25 C 1.38662 * 120.11776 * 359.71942 * 24 23 21 26 26 O 1.35705 * 120.13121 * 180.27425 * 25 24 23 27 27 C 1.38514 * 119.98631 * 354.73289 * 10 9 7 28 28 H 0.96998 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.85138 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.87696 * 180.02562 * 12 11 10 31 31 H 1.08002 * 120.02360 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.00342 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.00373 * 0.02562 * 16 15 14 34 34 H 1.08007 * 120.05854 * 359.97438 * 20 19 17 35 35 H 1.07995 * 119.81816 * 180.02562 * 23 21 20 36 36 H 1.08003 * 119.94523 * 180.02562 * 24 23 21 37 37 H 0.96697 * 114.00070 * 270.29789 * 26 25 24 38 38 H 1.08002 * 120.12229 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4055 -0.1076 11 6 5.3573 -2.4698 -0.2293 12 6 5.9915 -3.6933 -0.3398 13 6 5.2562 -4.8605 -0.3308 14 6 3.8633 -4.8081 -0.2089 15 6 3.0752 -6.0504 -0.1993 16 6 3.6959 -7.2445 -0.3079 17 6 2.9122 -8.4799 -0.2978 18 8 1.7001 -8.4311 -0.1921 19 6 3.5913 -9.7857 -0.4105 20 6 4.9821 -9.8461 -0.5325 21 6 5.6105 -11.0699 -0.6368 22 9 6.9551 -11.1281 -0.7552 23 6 4.8668 -12.2412 -0.6216 24 6 3.4920 -12.1936 -0.5016 25 6 2.8453 -10.9722 -0.3893 26 8 1.4947 -10.9254 -0.2657 27 6 3.2234 -3.5699 -0.1015 28 1 -0.4849 0.8401 0.0004 29 1 5.9391 -1.5599 -0.2383 30 1 7.0666 -3.7354 -0.4335 31 1 5.7554 -5.8143 -0.4177 32 1 2.0002 -6.0073 -0.1047 33 1 4.7710 -7.2877 -0.4013 34 1 5.5641 -8.9363 -0.5450 35 1 5.3659 -13.1954 -0.7034 36 1 2.9199 -13.1095 -0.4901 37 1 1.0240 -10.8775 -1.1090 38 1 2.1482 -3.5215 -0.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757467704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:24 Heat of formation + Delta-G solvation = -76.447583 kcal Electronic energy + Delta-G solvation = -25326.669884 eV Core-core repulsion = 21208.508424 eV Total energy + Delta-G solvation = -4118.161460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.26270 -40.56720 -39.35788 -38.48917 -36.96818 -36.83061 -33.67866 -32.43279 -32.08929 -29.90817 -29.71407 -28.89765 -25.63170 -25.13938 -23.75037 -22.62428 -21.73632 -20.88323 -19.04606 -18.78742 -18.11194 -17.77953 -17.13846 -17.02152 -16.13755 -15.84823 -15.72252 -15.42533 -15.13244 -14.66492 -14.54831 -14.31034 -14.04733 -13.99670 -13.87158 -13.72094 -13.27901 -12.98477 -12.41758 -12.28311 -12.26381 -12.20249 -11.91497 -11.87846 -11.20708 -11.03321 -10.95650 -10.77107 -10.29222 -9.94741 -9.78236 -9.63890 -9.53276 -8.94932 -8.93942 -8.04810 -7.53432 -6.48906 -4.17122 0.03997 0.62083 0.87013 2.05248 2.20705 2.81989 3.17266 3.20954 3.34654 3.39171 3.63221 3.78573 3.90479 4.17020 4.22346 4.38760 4.43615 4.70325 4.77810 4.92293 5.01253 5.02749 5.22540 5.33733 5.37118 5.45948 5.52296 5.58600 5.62519 5.78487 5.83539 5.94066 6.19906 6.21775 6.34774 6.43752 6.59069 6.90450 6.99013 7.10121 7.30817 7.40783 7.50742 7.67339 7.93067 8.85316 9.44558 10.58333 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002330 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.499448 B =12012.760344 C =13358.995769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.152 3.848 11 C -0.172 4.172 12 C -0.084 4.084 13 C -0.177 4.177 14 C -0.054 4.054 15 C 0.022 3.978 16 C -0.266 4.266 17 C 0.424 3.576 18 O -0.443 6.443 19 C -0.154 4.154 20 C -0.093 4.093 21 C 0.077 3.923 22 F -0.135 7.135 23 C -0.112 4.112 24 C -0.132 4.132 25 C 0.154 3.846 26 O -0.477 6.477 27 C -0.187 4.187 28 H 0.281 0.719 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.398 0.602 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.365 -22.090 -2.945 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.099 3.901 11 C -0.191 4.191 12 C -0.103 4.103 13 C -0.196 4.196 14 C -0.054 4.054 15 C 0.003 3.997 16 C -0.284 4.284 17 C 0.305 3.695 18 O -0.320 6.320 19 C -0.156 4.156 20 C -0.112 4.112 21 C 0.058 3.942 22 F -0.114 7.114 23 C -0.131 4.131 24 C -0.151 4.151 25 C 0.108 3.892 26 O -0.288 6.288 27 C -0.206 4.206 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.256 0.744 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.749 -21.713 -2.274 23.909 hybrid contribution 0.420 0.619 -0.499 0.899 sum 10.169 -21.093 -2.773 23.581 Atomic orbital electron populations 1.69644 1.05595 1.28665 1.47337 1.24474 0.95030 0.98901 0.95471 0.86175 0.80325 0.81353 0.79015 1.19809 1.20686 1.18333 1.20758 0.76737 0.96719 1.52742 0.87572 1.83594 1.22737 1.25350 1.80176 1.18993 0.91718 0.85530 0.93812 1.20433 0.91941 0.98227 1.08542 1.20601 0.98868 0.91622 0.99181 1.20900 0.92756 0.97800 1.08125 1.18719 0.93078 0.91867 1.01713 1.22740 1.00106 0.91250 0.85594 1.23201 1.00962 0.92601 1.11682 1.20127 0.88289 0.87807 0.73312 1.90696 1.15610 1.89342 1.36373 1.20848 0.93637 0.95428 1.05650 1.21399 0.93873 0.97698 0.98221 1.17543 0.77551 0.94268 1.04874 1.91534 1.29074 1.97226 1.93568 1.21227 0.93977 0.97950 0.99898 1.21321 0.94049 0.98106 1.01582 1.18674 0.84455 0.90878 0.95225 1.84776 1.13403 1.95820 1.34797 1.21556 1.01274 0.90938 1.06835 0.90898 0.86166 0.86323 0.86771 0.85004 0.84967 0.83136 0.83887 0.83744 0.74388 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.96 55.48 0.77 -24.09 16 2 C 0.07 1.79 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 21.15 28.62 -169.99 -4.86 16.28 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.80 9.94 30.89 0.31 -10.50 16 8 H 0.11 2.97 5.43 -52.48 -0.28 2.68 16 9 O -0.21 -5.43 8.58 0.02 0.00 -5.43 16 10 C 0.15 3.33 6.64 -39.18 -0.26 3.07 16 11 C -0.17 -3.16 9.98 -39.27 -0.39 -3.55 16 12 C -0.08 -1.30 10.02 -39.68 -0.40 -1.69 16 13 C -0.18 -2.69 9.41 -39.05 -0.37 -3.05 16 14 C -0.05 -0.92 5.87 -105.08 -0.62 -1.54 16 15 C 0.02 0.33 9.46 -37.12 -0.35 -0.02 16 16 C -0.27 -3.42 8.90 -37.49 -0.33 -3.75 16 17 C 0.42 5.61 7.06 -32.51 -0.23 5.38 16 18 O -0.44 -7.06 15.05 -16.74 -0.25 -7.32 16 19 C -0.15 -1.67 5.89 -104.78 -0.62 -2.28 16 20 C -0.09 -0.85 9.42 -39.12 -0.37 -1.22 16 21 C 0.08 0.66 7.28 -39.49 -0.29 0.37 16 22 F -0.14 -1.25 17.26 2.25 0.04 -1.21 16 23 C -0.11 -0.78 10.01 -39.45 -0.39 -1.17 16 24 C -0.13 -0.96 9.97 -39.48 -0.39 -1.36 16 25 C 0.15 1.52 6.72 -38.70 -0.26 1.26 16 26 O -0.48 -4.92 11.57 -40.70 -0.47 -5.39 16 27 C -0.19 -3.84 8.91 -38.90 -0.35 -4.19 16 28 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.37 6.16 -52.49 -0.32 1.04 16 32 H 0.13 2.08 7.52 -52.49 -0.39 1.69 16 33 H 0.13 1.38 4.33 -52.49 -0.23 1.15 16 34 H 0.15 1.16 6.23 -52.48 -0.33 0.83 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.40 2.52 9.06 45.56 0.41 2.93 16 38 H 0.14 3.03 5.63 -52.49 -0.30 2.73 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -31.50 342.27 -7.29 -38.79 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.27 Total: 5.77 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -5.41 Total: -22.56 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.77 Total: -24.09 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.72 Total: -18.13 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.50 -7.29 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757467704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.660 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds