Wall clock time and date at job start Tue Mar 31 2020 14:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46966 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.47125 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00528 * 3 2 1 7 7 C 1.38652 * 120.00529 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99601 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.35762 * 116.99861 * 185.07612 * 9 7 2 11 11 C 1.39060 * 119.98339 * 174.47416 * 10 9 7 12 12 C 1.38251 * 120.29096 * 180.02562 * 11 10 9 13 13 C 1.37957 * 120.24794 * 0.02562 * 12 11 10 14 14 C 1.39921 * 119.96358 * 359.97438 * 13 12 11 15 15 C 1.47131 * 120.14498 * 179.97438 * 14 13 12 16 16 C 1.35009 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.46306 * 119.99714 * 179.97438 * 16 15 14 18 18 O 1.21762 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.47620 * 119.99907 * 180.27075 * 17 16 15 20 20 C 1.39742 * 120.18327 * 359.73397 * 19 17 16 21 21 C 1.37971 * 119.88443 * 179.97438 * 20 19 17 22 22 F 1.35101 * 119.87470 * 179.97438 * 21 20 19 23 23 C 1.38751 * 120.24938 * 0.02562 * 21 20 19 24 24 C 1.38077 * 120.36929 * 359.97438 * 23 21 20 25 25 C 1.38662 * 120.11776 * 359.71942 * 24 23 21 26 26 O 1.35705 * 120.13121 * 180.27425 * 25 24 23 27 27 C 1.38514 * 119.98631 * 354.73289 * 10 9 7 28 28 H 0.96998 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.85138 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.87696 * 180.02562 * 12 11 10 31 31 H 1.08002 * 120.02360 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.00342 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.00373 * 0.02562 * 16 15 14 34 34 H 1.08007 * 120.05854 * 359.97438 * 20 19 17 35 35 H 1.07995 * 119.81816 * 180.02562 * 23 21 20 36 36 H 1.08003 * 119.94523 * 180.02562 * 24 23 21 37 37 H 0.96697 * 114.00070 * 270.29789 * 26 25 24 38 38 H 1.08002 * 120.12229 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4055 -0.1076 11 6 5.3573 -2.4698 -0.2293 12 6 5.9915 -3.6933 -0.3398 13 6 5.2562 -4.8605 -0.3308 14 6 3.8633 -4.8081 -0.2089 15 6 3.0752 -6.0504 -0.1993 16 6 3.6959 -7.2445 -0.3079 17 6 2.9122 -8.4799 -0.2978 18 8 1.7001 -8.4311 -0.1921 19 6 3.5913 -9.7857 -0.4105 20 6 4.9821 -9.8461 -0.5325 21 6 5.6105 -11.0699 -0.6368 22 9 6.9551 -11.1281 -0.7552 23 6 4.8668 -12.2412 -0.6216 24 6 3.4920 -12.1936 -0.5016 25 6 2.8453 -10.9722 -0.3893 26 8 1.4947 -10.9254 -0.2657 27 6 3.2234 -3.5699 -0.1015 28 1 -0.4849 0.8401 0.0004 29 1 5.9391 -1.5599 -0.2383 30 1 7.0666 -3.7354 -0.4335 31 1 5.7554 -5.8143 -0.4177 32 1 2.0002 -6.0073 -0.1047 33 1 4.7710 -7.2877 -0.4013 34 1 5.5641 -8.9363 -0.5450 35 1 5.3659 -13.1954 -0.7034 36 1 2.9199 -13.1095 -0.4901 37 1 1.0240 -10.8775 -1.1090 38 1 2.1482 -3.5215 -0.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757467704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:23 Heat of formation + Delta-G solvation = -94.868623 kcal Electronic energy + Delta-G solvation = -25327.468680 eV Core-core repulsion = 21208.508424 eV Total energy + Delta-G solvation = -4118.960256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.91167 -41.42764 -40.90717 -39.50052 -38.49346 -37.56888 -35.02517 -34.35142 -32.90095 -31.27959 -30.45522 -30.27101 -27.32863 -26.36688 -24.61880 -23.48881 -23.25514 -22.01912 -20.33117 -19.75430 -19.53638 -18.90722 -18.43695 -17.85031 -17.03335 -16.84946 -16.81677 -16.40450 -16.35711 -16.01921 -15.75268 -15.60567 -15.38890 -15.30516 -15.02071 -14.70652 -14.40518 -14.13322 -14.06408 -13.89807 -13.40186 -13.25182 -12.89938 -12.83193 -12.71739 -12.57123 -12.16667 -12.00609 -11.96695 -11.43716 -11.28840 -10.86852 -10.76626 -10.29717 -9.62027 -9.46826 -9.05747 -8.52161 -6.26416 -0.89312 -0.18922 -0.00451 0.61997 0.98898 1.30733 1.35231 1.51343 1.89312 2.26410 2.50672 2.76052 2.78554 3.02955 3.12144 3.14378 3.18026 3.57908 3.74104 3.88840 3.93993 4.11609 4.17613 4.26383 4.36157 4.39924 4.53367 4.56339 4.75704 4.84426 4.90538 4.98957 5.02024 5.04471 5.17408 5.27948 5.38178 5.54972 5.62312 5.68256 5.73773 5.85981 6.16132 6.46685 6.71147 6.81565 7.53985 8.59587 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002330 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.499448 B =12012.760344 C =13358.995769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.402 4.402 8 H 0.077 0.923 9 O -0.242 6.242 10 C 0.114 3.886 11 C -0.174 4.174 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.051 4.051 15 C -0.013 4.013 16 C -0.227 4.227 17 C 0.421 3.579 18 O -0.479 6.479 19 C -0.178 4.178 20 C -0.089 4.089 21 C 0.068 3.932 22 F -0.138 7.138 23 C -0.095 4.095 24 C -0.126 4.126 25 C 0.144 3.856 26 O -0.497 6.497 27 C -0.216 4.216 28 H 0.285 0.715 29 H 0.135 0.865 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.110 0.890 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.411 0.589 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.872 -25.022 -3.476 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.095 0.905 9 O -0.150 6.150 10 C 0.065 3.935 11 C -0.193 4.193 12 C -0.087 4.087 13 C -0.172 4.172 14 C -0.051 4.051 15 C -0.032 4.032 16 C -0.245 4.245 17 C 0.304 3.696 18 O -0.359 6.359 19 C -0.180 4.180 20 C -0.108 4.108 21 C 0.049 3.951 22 F -0.117 7.117 23 C -0.113 4.113 24 C -0.144 4.144 25 C 0.098 3.902 26 O -0.310 6.310 27 C -0.236 4.236 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.189 0.811 31 H 0.181 0.819 32 H 0.128 0.872 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.271 0.729 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.294 -24.688 -2.818 28.667 hybrid contribution -0.775 0.993 -0.375 1.314 sum 13.519 -23.696 -3.192 27.467 Atomic orbital electron populations 1.69741 1.07071 1.29697 1.49995 1.25335 0.95892 1.02370 0.95382 0.85169 0.78813 0.77064 0.79362 1.18926 1.19308 1.18392 1.20667 0.78175 0.96024 1.52954 0.90537 1.83526 1.21073 1.27194 1.83226 1.19596 0.93452 0.84840 0.95632 1.20828 0.90175 1.00606 1.07682 1.21199 1.01327 0.89930 0.96249 1.21511 0.91367 1.00134 1.04197 1.18896 0.94559 0.90884 1.00727 1.22509 0.99332 0.91778 0.89568 1.23533 1.02471 0.91318 1.07187 1.20524 0.87877 0.89122 0.72070 1.90693 1.17271 1.89939 1.37962 1.20631 0.94456 0.94219 1.08654 1.21490 0.93019 0.98833 0.97428 1.17653 0.77531 0.94623 1.05321 1.91535 1.29256 1.97237 1.93648 1.21594 0.93688 0.98797 0.97257 1.21545 0.94373 0.97956 1.00553 1.18974 0.84291 0.91679 0.95267 1.84728 1.14137 1.95920 1.36236 1.21480 1.00002 0.92732 1.09350 0.90527 0.84679 0.81110 0.81922 0.87235 0.81361 0.81575 0.80904 0.81220 0.72868 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.98 13.96 21.61 0.30 -55.68 16 2 C 0.01 0.50 5.49 84.83 0.47 0.96 16 3 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.40 -23.87 9.94 67.92 0.68 -23.20 16 8 H 0.08 4.82 5.43 -2.91 -0.02 4.80 16 9 O -0.24 -13.04 8.58 -22.83 -0.20 -13.24 16 10 C 0.11 5.18 6.64 22.53 0.15 5.33 16 11 C -0.17 -6.10 9.98 22.47 0.22 -5.87 16 12 C -0.07 -1.80 10.02 22.21 0.22 -1.58 16 13 C -0.15 -4.00 9.41 22.61 0.21 -3.79 16 14 C -0.05 -1.72 5.87 -20.16 -0.12 -1.84 16 15 C -0.01 -0.40 9.46 23.86 0.23 -0.18 16 16 C -0.23 -5.36 8.90 23.63 0.21 -5.15 16 17 C 0.42 10.77 7.06 26.85 0.19 10.96 16 18 O -0.48 -15.71 15.05 16.37 0.25 -15.46 16 19 C -0.18 -3.47 5.89 -19.97 -0.12 -3.59 16 20 C -0.09 -1.30 9.42 22.57 0.21 -1.09 16 21 C 0.07 0.90 7.28 22.33 0.16 1.06 16 22 F -0.14 -2.00 17.26 44.97 0.78 -1.22 16 23 C -0.09 -0.92 10.01 22.35 0.22 -0.69 16 24 C -0.13 -1.40 9.97 22.33 0.22 -1.18 16 25 C 0.14 2.56 6.72 22.84 0.15 2.71 16 26 O -0.50 -9.92 11.57 -69.34 -0.80 -10.72 16 27 C -0.22 -9.53 8.91 22.71 0.20 -9.33 16 28 H 0.29 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.16 2.69 6.16 -2.91 -0.02 2.67 16 32 H 0.11 3.83 7.52 -2.91 -0.02 3.81 16 33 H 0.17 2.63 4.33 -2.91 -0.01 2.61 16 34 H 0.17 1.73 6.23 -2.91 -0.02 1.72 16 35 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.41 5.12 9.06 -74.06 -0.67 4.45 16 38 H 0.11 5.25 5.63 -2.91 -0.02 5.24 16 Total: -1.00 -76.11 342.27 6.29 -69.83 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.48 Total: 15.64 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.52 Total: -36.46 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.75 Total: -39.42 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Total: -76.11 6.29 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757467704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.043 kcal (2) G-P(sol) polarization free energy of solvation -76.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds