Wall clock time and date at job start Tue Mar 31 2020 14:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48506 * 109.46867 * 239.99986 * 3 2 1 5 5 H 1.48501 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47057 * 119.99987 * 3 2 1 7 7 C 1.38651 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00354 * 179.97438 * 7 2 1 9 9 O 1.34838 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99930 * 185.08654 * 9 7 2 11 11 C 1.39066 * 119.98539 * 354.39644 * 10 9 7 12 12 C 1.38250 * 120.28634 * 180.02562 * 11 10 9 13 13 C 1.37958 * 120.25368 * 359.97438 * 12 11 10 14 14 C 1.39922 * 119.95746 * 359.97438 * 13 12 11 15 15 C 1.47137 * 120.13813 * 179.97438 * 14 13 12 16 16 C 1.35013 * 119.99912 * 131.97584 * 15 14 13 17 17 C 1.46308 * 119.99659 * 348.92521 * 16 15 14 18 18 O 1.21754 * 120.00319 * 353.34668 * 17 16 15 19 19 C 1.47615 * 119.99668 * 173.35623 * 17 16 15 20 20 C 1.39747 * 120.18458 * 359.97438 * 19 17 16 21 21 C 1.37973 * 119.88303 * 179.97438 * 20 19 17 22 22 F 1.35100 * 119.87090 * 179.97438 * 21 20 19 23 23 C 1.38751 * 120.24965 * 359.97438 * 21 20 19 24 24 C 1.38079 * 120.37155 * 0.02562 * 23 21 20 25 25 C 1.38669 * 120.11261 * 359.74041 * 24 23 21 26 26 O 1.35707 * 120.12493 * 180.27458 * 25 24 23 27 27 C 1.38515 * 119.98240 * 174.65437 * 10 9 7 28 28 H 0.97002 * 119.99559 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.85178 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.87500 * 179.97438 * 12 11 10 31 31 H 1.07995 * 120.02436 * 180.02562 * 13 12 11 32 32 H 1.08001 * 120.00227 * 311.97661 * 15 14 13 33 33 H 1.07995 * 120.00149 * 168.91783 * 16 15 14 34 34 H 1.08004 * 120.05517 * 359.95710 * 20 19 17 35 35 H 1.07997 * 119.81830 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.94408 * 180.02562 * 24 23 21 37 37 H 0.96693 * 114.00428 * 270.23494 * 26 25 24 38 38 H 1.08001 * 120.12714 * 359.97409 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1083 11 6 3.4588 -3.4376 0.0948 12 6 4.2136 -4.5907 0.2037 13 6 3.5947 -5.8175 0.3271 14 6 2.1978 -5.8969 0.3429 15 6 1.5336 -7.2033 0.4737 16 6 0.5361 -7.3668 1.3688 17 6 0.2759 -6.3331 2.3709 18 8 1.0312 -5.3841 2.4770 19 6 -0.9025 -6.4408 3.2535 20 6 -1.7722 -7.5282 3.1348 21 6 -2.8714 -7.6230 3.9633 22 9 -3.7123 -8.6741 3.8480 23 6 -3.1163 -6.6429 4.9144 24 6 -2.2639 -5.5641 5.0407 25 6 -1.1519 -5.4561 4.2192 26 8 -0.3109 -4.3987 4.3469 27 6 1.4361 -4.7306 0.2263 28 1 -0.4849 0.8401 -0.0004 29 1 3.9498 -2.4805 -0.0010 30 1 5.2918 -4.5309 0.1920 31 1 4.1880 -6.7159 0.4122 32 1 1.8440 -8.0315 -0.1462 33 1 -0.0697 -8.2605 1.3449 34 1 -1.5843 -8.2930 2.3956 35 1 -3.9786 -6.7243 5.5595 36 1 -2.4609 -4.8054 5.7836 37 1 -0.5480 -3.6390 3.7978 38 1 0.3575 -4.7849 0.2331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757467705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:28 Heat of formation + Delta-G solvation = -63.920203 kcal Electronic energy + Delta-G solvation = -26679.435751 eV Core-core repulsion = 22561.817520 eV Total energy + Delta-G solvation = -4117.618232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.07424 -40.34478 -39.09760 -38.13592 -36.50698 -36.34985 -33.33167 -32.23042 -31.86248 -29.53682 -29.32103 -28.62130 -25.44881 -24.96155 -23.44563 -22.33626 -21.37920 -21.01448 -19.04998 -18.43747 -17.88239 -17.35978 -17.03487 -16.51387 -15.88919 -15.66532 -15.43439 -15.08379 -14.66706 -14.58195 -14.31737 -14.21327 -13.88701 -13.78578 -13.50396 -13.25499 -13.07091 -12.94062 -12.42515 -12.15867 -11.98171 -11.88741 -11.67643 -11.34671 -10.95998 -10.81493 -10.75773 -10.64636 -10.45033 -9.51956 -9.40725 -9.36060 -9.28982 -8.79779 -8.65412 -7.64551 -7.18127 -6.40998 -3.99380 0.35117 0.88746 1.21060 2.39142 2.43183 2.95145 3.15122 3.16762 3.18834 3.64617 3.89955 3.99940 4.12046 4.18908 4.46800 4.61907 4.65751 4.93930 5.05627 5.14583 5.19914 5.35900 5.51230 5.59029 5.65154 5.69036 5.70951 5.83035 5.87253 6.03475 6.08937 6.28628 6.35821 6.41457 6.49731 6.72248 6.93546 7.08896 7.22873 7.38138 7.45580 7.72263 7.82425 7.88832 8.04036 9.05234 9.76293 10.77326 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003713 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.760971 B = 7539.507079 C = 9158.168921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.040 3.960 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.181 6.181 10 C 0.151 3.849 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.185 4.185 14 C -0.044 4.044 15 C 0.002 3.998 16 C -0.248 4.248 17 C 0.401 3.599 18 O -0.392 6.392 19 C -0.153 4.153 20 C -0.098 4.098 21 C 0.071 3.929 22 F -0.139 7.139 23 C -0.114 4.114 24 C -0.133 4.133 25 C 0.160 3.840 26 O -0.478 6.478 27 C -0.131 4.131 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.406 0.594 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -14.410 6.257 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.107 0.893 9 O -0.086 6.086 10 C 0.098 3.902 11 C -0.238 4.238 12 C -0.101 4.101 13 C -0.204 4.204 14 C -0.044 4.044 15 C -0.016 4.016 16 C -0.267 4.267 17 C 0.278 3.722 18 O -0.265 6.265 19 C -0.155 4.155 20 C -0.117 4.117 21 C 0.052 3.948 22 F -0.118 7.118 23 C -0.133 4.133 24 C -0.151 4.151 25 C 0.114 3.886 26 O -0.290 6.290 27 C -0.150 4.150 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.266 0.734 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.338 -14.045 6.681 15.907 hybrid contribution -0.032 0.783 -0.257 0.825 sum -3.369 -13.261 6.423 15.115 Atomic orbital electron populations 1.70026 1.05886 1.27553 1.46729 1.25227 0.95809 0.98648 0.96716 0.85823 0.78728 0.79974 0.79161 1.19583 1.20337 1.19531 1.21243 0.91702 0.80901 1.52666 0.89299 1.83975 1.34100 1.11280 1.79210 1.19114 0.90172 0.87917 0.92950 1.21277 0.93826 0.98947 1.09758 1.20599 0.98395 0.92289 0.98847 1.20597 0.92746 0.97096 1.09947 1.18415 0.93231 0.91367 1.01404 1.22623 0.90613 0.95399 0.92978 1.23303 1.01948 1.01745 0.99712 1.20138 0.83590 0.85551 0.82918 1.90913 1.43141 1.29098 1.63336 1.20977 0.98848 0.96765 0.98867 1.21300 0.92861 0.98526 0.98974 1.17514 0.90946 0.86986 0.99363 1.91507 1.69843 1.54932 1.95507 1.21174 1.00706 0.93377 0.98029 1.21356 0.93438 0.99208 1.01107 1.18724 0.88432 0.89364 0.92087 1.84718 1.51057 1.25012 1.68257 1.20009 0.98287 0.89464 1.07244 0.92143 0.85651 0.87418 0.87592 0.85037 0.85090 0.83540 0.84116 0.83821 0.73382 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.67 55.48 0.76 -24.51 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.94 9.49 30.88 0.29 -10.65 16 8 H 0.09 2.33 5.19 -52.49 -0.27 2.06 16 9 O -0.18 -5.21 9.75 0.01 0.00 -5.21 16 10 C 0.15 3.73 6.64 -39.17 -0.26 3.47 16 11 C -0.22 -4.89 9.17 -39.27 -0.36 -5.25 16 12 C -0.08 -1.58 10.02 -39.68 -0.40 -1.97 16 13 C -0.18 -3.29 9.79 -39.05 -0.38 -3.67 16 14 C -0.04 -0.80 4.33 -105.08 -0.45 -1.26 16 15 C 0.00 0.03 9.78 -37.12 -0.36 -0.33 16 16 C -0.25 -3.23 9.40 -37.48 -0.35 -3.58 16 17 C 0.40 6.39 6.29 -32.51 -0.20 6.18 16 18 O -0.39 -7.81 11.29 -16.74 -0.19 -8.00 16 19 C -0.15 -2.11 5.89 -104.78 -0.62 -2.72 16 20 C -0.10 -1.09 9.42 -39.11 -0.37 -1.46 16 21 C 0.07 0.77 7.28 -39.49 -0.29 0.48 16 22 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 23 C -0.11 -1.12 10.01 -39.45 -0.39 -1.51 16 24 C -0.13 -1.44 9.97 -39.48 -0.39 -1.84 16 25 C 0.16 2.22 6.72 -38.70 -0.26 1.96 16 26 O -0.48 -7.49 11.57 -40.70 -0.47 -7.96 16 27 C -0.13 -2.84 6.73 -38.90 -0.26 -3.10 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 2.79 5.62 -52.49 -0.29 2.50 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.20 6.36 -52.49 -0.33 0.86 16 34 H 0.15 1.29 6.24 -52.48 -0.33 0.96 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.41 5.67 9.06 45.56 0.41 6.08 16 38 H 0.11 2.34 7.47 -52.49 -0.39 1.95 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -33.56 339.40 -7.39 -40.95 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.46 Total: 9.74 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -5.16 Total: -24.26 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.66 Total: -21.17 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.56 -7.39 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757467705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.974 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds