Wall clock time and date at job start Tue Mar 31 2020 14:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48506 * 109.46867 * 239.99986 * 3 2 1 5 5 H 1.48501 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47057 * 119.99987 * 3 2 1 7 7 C 1.38651 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00354 * 179.97438 * 7 2 1 9 9 O 1.34838 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99930 * 185.08654 * 9 7 2 11 11 C 1.39066 * 119.98539 * 354.39644 * 10 9 7 12 12 C 1.38250 * 120.28634 * 180.02562 * 11 10 9 13 13 C 1.37958 * 120.25368 * 359.97438 * 12 11 10 14 14 C 1.39922 * 119.95746 * 359.97438 * 13 12 11 15 15 C 1.47137 * 120.13813 * 179.97438 * 14 13 12 16 16 C 1.35013 * 119.99912 * 131.97584 * 15 14 13 17 17 C 1.46308 * 119.99659 * 348.92521 * 16 15 14 18 18 O 1.21754 * 120.00319 * 353.34668 * 17 16 15 19 19 C 1.47615 * 119.99668 * 173.35623 * 17 16 15 20 20 C 1.39747 * 120.18458 * 359.97438 * 19 17 16 21 21 C 1.37973 * 119.88303 * 179.97438 * 20 19 17 22 22 F 1.35100 * 119.87090 * 179.97438 * 21 20 19 23 23 C 1.38751 * 120.24965 * 359.97438 * 21 20 19 24 24 C 1.38079 * 120.37155 * 0.02562 * 23 21 20 25 25 C 1.38669 * 120.11261 * 359.74041 * 24 23 21 26 26 O 1.35707 * 120.12493 * 180.27458 * 25 24 23 27 27 C 1.38515 * 119.98240 * 174.65437 * 10 9 7 28 28 H 0.97002 * 119.99559 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.85178 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.87500 * 179.97438 * 12 11 10 31 31 H 1.07995 * 120.02436 * 180.02562 * 13 12 11 32 32 H 1.08001 * 120.00227 * 311.97661 * 15 14 13 33 33 H 1.07995 * 120.00149 * 168.91783 * 16 15 14 34 34 H 1.08004 * 120.05517 * 359.95710 * 20 19 17 35 35 H 1.07997 * 119.81830 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.94408 * 180.02562 * 24 23 21 37 37 H 0.96693 * 114.00428 * 270.23494 * 26 25 24 38 38 H 1.08001 * 120.12714 * 359.97409 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1083 11 6 3.4588 -3.4376 0.0948 12 6 4.2136 -4.5907 0.2037 13 6 3.5947 -5.8175 0.3271 14 6 2.1978 -5.8969 0.3429 15 6 1.5336 -7.2033 0.4737 16 6 0.5361 -7.3668 1.3688 17 6 0.2759 -6.3331 2.3709 18 8 1.0312 -5.3841 2.4770 19 6 -0.9025 -6.4408 3.2535 20 6 -1.7722 -7.5282 3.1348 21 6 -2.8714 -7.6230 3.9633 22 9 -3.7123 -8.6741 3.8480 23 6 -3.1163 -6.6429 4.9144 24 6 -2.2639 -5.5641 5.0407 25 6 -1.1519 -5.4561 4.2192 26 8 -0.3109 -4.3987 4.3469 27 6 1.4361 -4.7306 0.2263 28 1 -0.4849 0.8401 -0.0004 29 1 3.9498 -2.4805 -0.0010 30 1 5.2918 -4.5309 0.1920 31 1 4.1880 -6.7159 0.4122 32 1 1.8440 -8.0315 -0.1462 33 1 -0.0697 -8.2605 1.3449 34 1 -1.5843 -8.2930 2.3956 35 1 -3.9786 -6.7243 5.5595 36 1 -2.4609 -4.8054 5.7836 37 1 -0.5480 -3.6390 3.7978 38 1 0.3575 -4.7849 0.2331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757467705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:27 Heat of formation + Delta-G solvation = -84.774709 kcal Electronic energy + Delta-G solvation = -26680.340071 eV Core-core repulsion = 22561.817520 eV Total energy + Delta-G solvation = -4118.522551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93225 -41.48186 -40.65414 -39.49986 -38.02254 -37.55599 -34.66773 -34.19176 -32.88784 -31.02318 -30.41383 -30.09834 -27.34509 -26.22264 -24.52423 -23.53381 -22.95281 -22.35714 -20.42846 -19.49425 -19.28232 -18.96771 -18.33384 -17.61067 -16.85742 -16.84157 -16.73671 -16.40928 -16.18810 -16.11761 -15.71859 -15.53112 -15.33700 -15.09282 -14.77754 -14.49438 -14.39994 -14.09446 -14.02081 -13.55542 -13.51407 -13.03623 -12.86564 -12.84251 -12.57921 -12.36006 -12.28703 -12.15405 -11.87476 -11.22393 -10.84361 -10.68905 -10.58647 -10.26436 -9.61315 -9.14627 -8.92116 -8.45147 -6.12716 -0.70531 -0.03485 0.05870 0.80700 0.95232 1.33581 1.44547 1.49466 1.93599 2.18475 2.57610 2.86739 2.92348 3.14994 3.20218 3.22025 3.50036 3.60769 3.85994 3.93907 4.11849 4.15523 4.26124 4.33297 4.50132 4.52381 4.57985 4.72107 4.73790 4.83707 4.94826 4.95850 5.08928 5.13775 5.19843 5.32445 5.43988 5.61305 5.68717 5.73858 5.75822 6.04591 6.23530 6.60288 6.72161 6.99696 7.82069 8.78044 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003713 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.760971 B = 7539.507079 C = 9158.168921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.239 4.239 12 C -0.082 4.082 13 C -0.171 4.171 14 C -0.036 4.036 15 C -0.008 4.008 16 C -0.234 4.234 17 C 0.391 3.609 18 O -0.448 6.448 19 C -0.177 4.177 20 C -0.088 4.088 21 C 0.069 3.931 22 F -0.136 7.136 23 C -0.099 4.099 24 C -0.131 4.131 25 C 0.130 3.870 26 O -0.499 6.499 27 C -0.141 4.141 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.403 0.597 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -17.780 6.653 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.258 4.258 12 C -0.100 4.100 13 C -0.189 4.189 14 C -0.036 4.036 15 C -0.026 4.026 16 C -0.252 4.252 17 C 0.271 3.729 18 O -0.325 6.325 19 C -0.179 4.179 20 C -0.106 4.106 21 C 0.050 3.950 22 F -0.114 7.114 23 C -0.118 4.118 24 C -0.149 4.149 25 C 0.085 3.915 26 O -0.312 6.312 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.201 0.799 33 H 0.197 0.803 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.179 0.821 37 H 0.263 0.737 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.748 -17.492 7.078 19.069 hybrid contribution -0.248 1.449 -0.273 1.495 sum -2.997 -16.043 6.805 17.682 Atomic orbital electron populations 1.70175 1.07866 1.28635 1.49237 1.26501 0.96847 1.02440 0.95988 0.84704 0.77471 0.74574 0.79809 1.18154 1.19406 1.18511 1.21727 0.92342 0.81634 1.53169 0.88625 1.83931 1.35713 1.12413 1.82114 1.19674 0.91512 0.87843 0.94925 1.21380 0.93192 1.00141 1.11108 1.21040 1.00141 0.91524 0.97323 1.21225 0.92887 0.98262 1.06570 1.18930 0.93837 0.92381 0.98477 1.22956 0.90644 0.94377 0.94633 1.23698 1.01401 1.02091 0.98018 1.20898 0.83430 0.85232 0.83299 1.90903 1.45205 1.31285 1.65094 1.20947 0.99351 0.98183 0.99429 1.21484 0.92024 0.97928 0.99181 1.17605 0.90818 0.87172 0.99396 1.91525 1.69652 1.54765 1.95483 1.21526 1.00815 0.91973 0.97481 1.21524 0.92488 1.00142 1.00795 1.19166 0.89604 0.89146 0.93629 1.84689 1.52439 1.25691 1.68407 1.20105 0.97894 0.90052 1.08020 0.91966 0.86696 0.83750 0.82888 0.79888 0.80276 0.80781 0.80899 0.82063 0.73694 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.33 13.67 21.61 0.30 -57.03 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 8 H 0.10 5.37 5.19 -2.91 -0.02 5.36 16 9 O -0.23 -14.70 9.75 -22.89 -0.22 -14.92 16 10 C 0.11 5.82 6.64 22.53 0.15 5.97 16 11 C -0.24 -11.14 9.17 22.47 0.21 -10.93 16 12 C -0.08 -3.01 10.02 22.21 0.22 -2.79 16 13 C -0.17 -5.58 9.79 22.61 0.22 -5.36 16 14 C -0.04 -1.27 4.33 -20.16 -0.09 -1.36 16 15 C -0.01 -0.20 9.78 23.87 0.23 0.03 16 16 C -0.23 -5.35 9.40 23.63 0.22 -5.13 16 17 C 0.39 12.40 6.29 26.85 0.17 12.57 16 18 O -0.45 -18.72 11.29 16.40 0.19 -18.53 16 19 C -0.18 -4.83 5.89 -19.97 -0.12 -4.95 16 20 C -0.09 -1.74 9.42 22.57 0.21 -1.53 16 21 C 0.07 1.30 7.28 22.33 0.16 1.46 16 22 F -0.14 -2.49 17.26 44.97 0.78 -1.71 16 23 C -0.10 -1.69 10.01 22.35 0.22 -1.47 16 24 C -0.13 -2.75 9.97 22.34 0.22 -2.52 16 25 C 0.13 3.72 6.72 22.84 0.15 3.87 16 26 O -0.50 -17.11 11.57 -69.35 -0.80 -17.92 16 27 C -0.14 -6.44 6.73 22.71 0.15 -6.29 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 29 H 0.12 5.44 5.62 -2.91 -0.02 5.42 16 30 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.18 2.30 6.36 -2.91 -0.02 2.28 16 34 H 0.17 2.31 6.24 -2.91 -0.02 2.29 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.40 13.13 9.06 -74.06 -0.67 12.46 16 38 H 0.09 4.31 7.47 -2.91 -0.02 4.29 16 Total: -1.00 -82.36 339.40 6.19 -76.17 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.47 Total: 31.27 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.46 Total: -43.44 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.30 Total: -57.03 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.84 Total: -51.37 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.71 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -82.36 6.19 -76.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757467705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.604 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds