Wall clock time and date at job start Tue Mar 31 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86791 * 120.00370 * 2 1 4 4 H 1.48498 * 109.47412 * 270.00446 * 3 2 1 5 5 H 1.48509 * 109.46922 * 30.00494 * 3 2 1 6 6 H 1.48503 * 109.47266 * 149.99904 * 3 2 1 7 7 C 1.38660 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00082 * 185.05749 * 9 7 2 11 11 C 1.39054 * 119.98117 * 354.40008 * 10 9 7 12 12 C 1.38258 * 120.28384 * 180.02562 * 11 10 9 13 13 C 1.37963 * 120.25077 * 0.02562 * 12 11 10 14 14 C 1.39908 * 119.95981 * 359.97438 * 13 12 11 15 15 C 1.47140 * 120.14219 * 180.02562 * 14 13 12 16 16 C 1.34982 * 120.00124 * 136.97212 * 15 14 13 17 17 C 1.46331 * 120.00070 * 348.72684 * 16 15 14 18 18 O 1.21772 * 119.99997 * 353.47225 * 17 16 15 19 19 C 1.47504 * 120.00292 * 173.75131 * 17 16 15 20 20 C 1.39808 * 120.16625 * 359.71830 * 19 17 16 21 21 C 1.37661 * 119.93310 * 179.97438 * 20 19 17 22 22 C 1.38874 * 120.27396 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.82921 * 179.97438 * 22 21 20 24 24 C 1.38369 * 120.34107 * 0.02562 * 22 21 20 25 25 C 1.38562 * 120.06230 * 359.69592 * 24 22 21 26 26 O 1.35658 * 120.13588 * 180.27948 * 25 24 22 27 27 C 1.38514 * 119.98604 * 174.69952 * 10 9 7 28 28 H 0.97005 * 119.99407 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.86227 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.87218 * 179.97438 * 12 11 10 31 31 H 1.07997 * 120.01645 * 179.97438 * 13 12 11 32 32 H 1.08005 * 119.99947 * 316.98064 * 15 14 13 33 33 H 1.08004 * 119.99878 * 168.72438 * 16 15 14 34 34 H 1.08000 * 120.03167 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.86606 * 180.02562 * 21 20 19 36 36 H 1.07991 * 119.96892 * 179.97438 * 24 22 21 37 37 H 0.96696 * 113.99868 * 270.27597 * 26 25 24 38 38 H 1.08005 * 120.12388 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2010 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5048 0.1056 11 6 3.4587 -3.4377 0.0905 12 6 4.2136 -4.5910 0.1976 13 6 3.5948 -5.8180 0.3198 14 6 2.1980 -5.8975 0.3360 15 6 1.5338 -7.2039 0.4667 16 6 0.4715 -7.3418 1.2880 17 6 0.1308 -6.2743 2.2290 18 8 0.8708 -5.3157 2.3563 19 6 -1.1060 -6.3624 3.0280 20 6 -1.9582 -7.4614 2.8848 21 6 -3.1109 -7.5390 3.6333 22 6 -3.4322 -6.5291 4.5308 23 9 -4.5660 -6.6142 5.2605 24 6 -2.5974 -5.4358 4.6809 25 6 -1.4307 -5.3462 3.9389 26 8 -0.6084 -4.2778 4.0890 27 6 1.4363 -4.7310 0.2225 28 1 -0.4849 0.8401 0.0004 29 1 3.9498 -2.4806 -0.0052 30 1 5.2919 -4.5312 0.1848 31 1 4.1882 -6.7165 0.4027 32 1 1.8963 -8.0526 -0.0944 33 1 -0.1270 -8.2401 1.2505 34 1 -1.7120 -8.2492 2.1882 35 1 -3.7683 -8.3886 3.5220 36 1 -2.8533 -4.6538 5.3804 37 1 -0.8109 -3.5396 3.4980 38 1 0.3576 -4.7852 0.2299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757476223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:32 Heat of formation + Delta-G solvation = -61.669387 kcal Electronic energy + Delta-G solvation = -26693.988833 eV Core-core repulsion = 22576.468204 eV Total energy + Delta-G solvation = -4117.520629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.18123 -40.34707 -39.10526 -38.09698 -36.58529 -36.33190 -33.29580 -32.21535 -31.42626 -30.10380 -29.33175 -28.57783 -25.37156 -24.70538 -23.39796 -22.50203 -21.38014 -21.00665 -18.96050 -18.74288 -17.62698 -17.22546 -16.96038 -16.53922 -16.29310 -15.83777 -15.17113 -15.05405 -14.72434 -14.56827 -14.32205 -14.14154 -13.88944 -13.79962 -13.43514 -13.33098 -13.08937 -12.93464 -12.42468 -12.25769 -11.91635 -11.67523 -11.62956 -11.37268 -10.97654 -10.83227 -10.79451 -10.64582 -10.43069 -9.53323 -9.38950 -9.28374 -9.18989 -8.82449 -8.76333 -7.56881 -7.16889 -6.40834 -3.98686 0.34811 0.94765 1.17487 2.42826 2.44988 2.96408 3.14866 3.16471 3.20760 3.66485 3.81085 4.00255 4.15280 4.28762 4.50427 4.63514 4.70378 4.93029 5.04146 5.15242 5.20216 5.35604 5.51511 5.58849 5.67133 5.69536 5.76341 5.86465 5.89103 6.02696 6.09596 6.28761 6.36689 6.42522 6.50915 6.73230 6.93629 7.09388 7.24155 7.38154 7.45848 7.71384 7.82559 7.94082 8.04399 9.05682 9.77057 10.77652 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003881 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.020271 B = 7213.158403 C = 9213.536852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.388 4.388 8 H 0.090 0.910 9 O -0.182 6.182 10 C 0.147 3.853 11 C -0.216 4.216 12 C -0.087 4.087 13 C -0.182 4.182 14 C -0.052 4.052 15 C 0.002 3.998 16 C -0.250 4.250 17 C 0.400 3.600 18 O -0.395 6.395 19 C -0.192 4.192 20 C -0.034 4.034 21 C -0.181 4.181 22 C 0.137 3.863 23 F -0.135 7.135 24 C -0.200 4.200 25 C 0.200 3.800 26 O -0.476 6.476 27 C -0.118 4.118 28 H 0.268 0.732 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.410 0.590 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -15.452 4.637 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.464 4.464 8 H 0.107 0.893 9 O -0.086 6.086 10 C 0.095 3.905 11 C -0.235 4.235 12 C -0.106 4.106 13 C -0.201 4.201 14 C -0.052 4.052 15 C -0.017 4.017 16 C -0.268 4.268 17 C 0.277 3.723 18 O -0.269 6.269 19 C -0.193 4.193 20 C -0.052 4.052 21 C -0.199 4.199 22 C 0.118 3.882 23 F -0.114 7.114 24 C -0.219 4.219 25 C 0.154 3.846 26 O -0.289 6.289 27 C -0.137 4.137 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.271 0.729 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.488 -15.027 5.143 16.261 hybrid contribution -0.069 1.001 -0.085 1.006 sum -3.557 -14.026 5.059 15.329 Atomic orbital electron populations 1.70035 1.05879 1.27423 1.46870 1.25227 0.95815 0.98646 0.96758 0.85751 0.78986 0.80306 0.78627 1.19981 1.20315 1.19244 1.21288 0.91716 0.80910 1.52493 0.89274 1.83971 1.34073 1.11259 1.79311 1.19117 0.90160 0.87968 0.93288 1.21293 0.93851 0.98952 1.09449 1.20600 0.98401 0.92303 0.99261 1.20625 0.92822 0.97072 1.09574 1.18412 0.93185 0.91455 1.02154 1.22599 0.91174 0.95603 0.92287 1.23275 1.01066 1.01407 1.01094 1.20131 0.84162 0.85902 0.82105 1.90927 1.47157 1.29997 1.58789 1.21206 0.99620 0.97667 1.00842 1.21178 0.91573 0.96265 0.96215 1.21072 0.99838 0.99906 0.99130 1.17687 0.83165 0.95253 0.92100 1.91519 1.48189 1.96197 1.75457 1.21429 0.95145 1.00148 1.05166 1.18347 0.87024 0.88724 0.90552 1.84690 1.54516 1.25995 1.63725 1.20022 0.98310 0.89470 1.05904 0.92211 0.85650 0.87428 0.87580 0.85168 0.85107 0.83696 0.84108 0.83650 0.72941 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.67 55.48 0.76 -24.52 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.92 9.49 30.89 0.29 -10.62 16 8 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 9 O -0.18 -5.22 9.75 0.02 0.00 -5.22 16 10 C 0.15 3.63 6.64 -39.18 -0.26 3.37 16 11 C -0.22 -4.83 9.17 -39.27 -0.36 -5.19 16 12 C -0.09 -1.65 10.02 -39.67 -0.40 -2.05 16 13 C -0.18 -3.21 9.79 -39.06 -0.38 -3.59 16 14 C -0.05 -0.94 4.55 -105.08 -0.48 -1.42 16 15 C 0.00 0.02 9.81 -37.13 -0.36 -0.34 16 16 C -0.25 -3.14 9.37 -37.49 -0.35 -3.49 16 17 C 0.40 6.29 6.10 -32.55 -0.20 6.09 16 18 O -0.39 -7.90 10.95 -16.76 -0.18 -8.09 16 19 C -0.19 -2.60 5.89 -104.77 -0.62 -3.22 16 20 C -0.03 -0.34 9.44 -39.21 -0.37 -0.71 16 21 C -0.18 -1.72 10.00 -39.56 -0.40 -2.12 16 22 C 0.14 1.55 7.30 -39.30 -0.29 1.26 16 23 F -0.14 -1.54 17.26 2.25 0.04 -1.50 16 24 C -0.20 -2.46 9.95 -39.41 -0.39 -2.85 16 25 C 0.20 2.87 6.72 -38.70 -0.26 2.61 16 26 O -0.48 -7.73 11.57 -40.56 -0.47 -8.20 16 27 C -0.12 -2.55 6.53 -38.90 -0.25 -2.80 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.13 2.79 5.62 -52.49 -0.29 2.50 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.13 1.09 6.35 -52.48 -0.33 0.76 16 34 H 0.15 0.99 6.24 -52.49 -0.33 0.67 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.41 5.98 9.06 45.56 0.41 6.39 16 38 H 0.11 2.33 6.99 -52.48 -0.37 1.96 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -33.66 338.40 -7.38 -41.05 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -2.43 Total: 9.78 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -5.17 Total: -24.09 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.76 Total: -24.52 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.65 Total: -21.50 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.66 -7.38 -41.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757476223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.623 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds