Wall clock time and date at job start Tue Mar 31 2020 14:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86791 * 120.00370 * 2 1 4 4 H 1.48498 * 109.47412 * 270.00446 * 3 2 1 5 5 H 1.48509 * 109.46922 * 30.00494 * 3 2 1 6 6 H 1.48503 * 109.47266 * 149.99904 * 3 2 1 7 7 C 1.38660 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00082 * 185.05749 * 9 7 2 11 11 C 1.39054 * 119.98117 * 354.40008 * 10 9 7 12 12 C 1.38258 * 120.28384 * 180.02562 * 11 10 9 13 13 C 1.37963 * 120.25077 * 0.02562 * 12 11 10 14 14 C 1.39908 * 119.95981 * 359.97438 * 13 12 11 15 15 C 1.47140 * 120.14219 * 180.02562 * 14 13 12 16 16 C 1.34982 * 120.00124 * 136.97212 * 15 14 13 17 17 C 1.46331 * 120.00070 * 348.72684 * 16 15 14 18 18 O 1.21772 * 119.99997 * 353.47225 * 17 16 15 19 19 C 1.47504 * 120.00292 * 173.75131 * 17 16 15 20 20 C 1.39808 * 120.16625 * 359.71830 * 19 17 16 21 21 C 1.37661 * 119.93310 * 179.97438 * 20 19 17 22 22 C 1.38874 * 120.27396 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.82921 * 179.97438 * 22 21 20 24 24 C 1.38369 * 120.34107 * 0.02562 * 22 21 20 25 25 C 1.38562 * 120.06230 * 359.69592 * 24 22 21 26 26 O 1.35658 * 120.13588 * 180.27948 * 25 24 22 27 27 C 1.38514 * 119.98604 * 174.69952 * 10 9 7 28 28 H 0.97005 * 119.99407 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.86227 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.87218 * 179.97438 * 12 11 10 31 31 H 1.07997 * 120.01645 * 179.97438 * 13 12 11 32 32 H 1.08005 * 119.99947 * 316.98064 * 15 14 13 33 33 H 1.08004 * 119.99878 * 168.72438 * 16 15 14 34 34 H 1.08000 * 120.03167 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.86606 * 180.02562 * 21 20 19 36 36 H 1.07991 * 119.96892 * 179.97438 * 24 22 21 37 37 H 0.96696 * 113.99868 * 270.27597 * 26 25 24 38 38 H 1.08005 * 120.12388 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2010 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5048 0.1056 11 6 3.4587 -3.4377 0.0905 12 6 4.2136 -4.5910 0.1976 13 6 3.5948 -5.8180 0.3198 14 6 2.1980 -5.8975 0.3360 15 6 1.5338 -7.2039 0.4667 16 6 0.4715 -7.3418 1.2880 17 6 0.1308 -6.2743 2.2290 18 8 0.8708 -5.3157 2.3563 19 6 -1.1060 -6.3624 3.0280 20 6 -1.9582 -7.4614 2.8848 21 6 -3.1109 -7.5390 3.6333 22 6 -3.4322 -6.5291 4.5308 23 9 -4.5660 -6.6142 5.2605 24 6 -2.5974 -5.4358 4.6809 25 6 -1.4307 -5.3462 3.9389 26 8 -0.6084 -4.2778 4.0890 27 6 1.4363 -4.7310 0.2225 28 1 -0.4849 0.8401 0.0004 29 1 3.9498 -2.4806 -0.0052 30 1 5.2919 -4.5312 0.1848 31 1 4.1882 -6.7165 0.4027 32 1 1.8963 -8.0526 -0.0944 33 1 -0.1270 -8.2401 1.2505 34 1 -1.7120 -8.2492 2.1882 35 1 -3.7683 -8.3886 3.5220 36 1 -2.8533 -4.6538 5.3804 37 1 -0.8109 -3.5396 3.4980 38 1 0.3576 -4.7852 0.2299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757476223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:31 Heat of formation + Delta-G solvation = -83.030428 kcal Electronic energy + Delta-G solvation = -26694.915117 eV Core-core repulsion = 22576.468204 eV Total energy + Delta-G solvation = -4118.446913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.09143 -41.49112 -40.64310 -39.47979 -37.98309 -37.65513 -34.62095 -34.17371 -32.48551 -31.13955 -30.85967 -30.02709 -27.32900 -25.93688 -24.40781 -23.71574 -22.94851 -22.35297 -20.36569 -19.78996 -19.19076 -18.87671 -17.98297 -17.57635 -17.54489 -16.82107 -16.73386 -16.39166 -16.18018 -15.92357 -15.78963 -15.50776 -15.33385 -15.03609 -14.85824 -14.49584 -14.34560 -14.08760 -13.99850 -13.58020 -13.54669 -13.05385 -12.89343 -12.62787 -12.56971 -12.31143 -12.26644 -12.13749 -11.97003 -11.21058 -10.85662 -10.70300 -10.55315 -10.10880 -9.77175 -9.02700 -8.90444 -8.45510 -6.12343 -0.71420 0.02007 0.04091 0.82525 1.02578 1.32793 1.42299 1.50013 1.95626 2.17903 2.61322 2.85081 2.88056 3.10108 3.22567 3.34084 3.52429 3.62811 3.90686 3.96428 4.12371 4.13936 4.25859 4.33671 4.51423 4.52585 4.59928 4.72492 4.81164 4.90127 4.97516 5.00403 5.11339 5.13789 5.22163 5.34738 5.46990 5.62076 5.70404 5.76996 5.79584 6.04974 6.25285 6.53982 6.80120 6.99726 7.83100 8.78005 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003881 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.020271 B = 7213.158403 C = 9213.536852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.410 4.410 8 H 0.096 0.904 9 O -0.235 6.235 10 C 0.104 3.896 11 C -0.238 4.238 12 C -0.088 4.088 13 C -0.168 4.168 14 C -0.045 4.045 15 C -0.011 4.011 16 C -0.231 4.231 17 C 0.388 3.612 18 O -0.454 6.454 19 C -0.214 4.214 20 C -0.016 4.016 21 C -0.164 4.164 22 C 0.135 3.865 23 F -0.135 7.135 24 C -0.209 4.209 25 C 0.167 3.833 26 O -0.499 6.499 27 C -0.127 4.127 28 H 0.271 0.729 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.155 0.845 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.181 0.819 36 H 0.146 0.854 37 H 0.405 0.595 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -19.947 4.284 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.487 4.487 8 H 0.113 0.887 9 O -0.143 6.143 10 C 0.055 3.945 11 C -0.257 4.257 12 C -0.106 4.106 13 C -0.186 4.186 14 C -0.045 4.045 15 C -0.029 4.029 16 C -0.249 4.249 17 C 0.269 3.731 18 O -0.332 6.332 19 C -0.216 4.216 20 C -0.034 4.034 21 C -0.183 4.183 22 C 0.116 3.884 23 F -0.113 7.113 24 C -0.229 4.229 25 C 0.121 3.879 26 O -0.312 6.312 27 C -0.147 4.147 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.162 0.838 31 H 0.173 0.827 32 H 0.202 0.798 33 H 0.205 0.795 34 H 0.207 0.793 35 H 0.199 0.801 36 H 0.164 0.836 37 H 0.265 0.735 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.799 -19.597 4.795 20.368 hybrid contribution -0.323 2.013 0.131 2.043 sum -3.122 -17.584 4.926 18.526 Atomic orbital electron populations 1.70182 1.07845 1.28502 1.49437 1.26494 0.96856 1.02428 0.96093 0.84641 0.77748 0.74876 0.79282 1.18615 1.19529 1.18081 1.21752 0.92303 0.81687 1.52937 0.88698 1.83926 1.35676 1.12387 1.82281 1.19696 0.91499 0.87937 0.95403 1.21389 0.93253 1.00122 1.10919 1.21039 1.00108 0.91591 0.97844 1.21264 0.92997 0.98208 1.06120 1.18972 0.93789 0.92592 0.99123 1.22948 0.91377 0.94532 0.94029 1.23715 1.00475 1.01709 0.98973 1.20974 0.84121 0.85759 0.82205 1.90924 1.49159 1.32329 1.60794 1.21305 1.00088 0.99048 1.01118 1.21615 0.90303 0.95469 0.95991 1.21515 0.99747 0.99924 0.97087 1.17872 0.82799 0.95338 0.92401 1.91525 1.48069 1.96161 1.75564 1.21451 0.95012 1.01154 1.05249 1.18700 0.87985 0.88756 0.92426 1.84663 1.55811 1.26798 1.63972 1.20131 0.97943 0.90032 1.06566 0.92026 0.86864 0.83839 0.82709 0.79832 0.79477 0.79281 0.80136 0.83615 0.73468 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.69 13.67 21.62 0.30 -57.40 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 3 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.41 -24.98 9.49 67.92 0.64 -24.33 16 8 H 0.10 5.38 5.19 -2.91 -0.02 5.37 16 9 O -0.24 -14.80 9.75 -22.83 -0.22 -15.03 16 10 C 0.10 5.51 6.64 22.53 0.15 5.66 16 11 C -0.24 -11.11 9.17 22.47 0.21 -10.91 16 12 C -0.09 -3.21 10.02 22.21 0.22 -2.98 16 13 C -0.17 -5.37 9.79 22.61 0.22 -5.15 16 14 C -0.04 -1.54 4.55 -20.16 -0.09 -1.63 16 15 C -0.01 -0.25 9.81 23.86 0.23 -0.02 16 16 C -0.23 -4.79 9.37 23.63 0.22 -4.57 16 17 C 0.39 11.94 6.10 26.82 0.16 12.10 16 18 O -0.45 -19.05 10.95 16.34 0.18 -18.87 16 19 C -0.21 -5.63 5.89 -19.96 -0.12 -5.75 16 20 C -0.02 -0.26 9.44 22.51 0.21 -0.04 16 21 C -0.16 -2.46 10.00 22.29 0.22 -2.23 16 22 C 0.14 2.82 7.30 22.45 0.16 2.98 16 23 F -0.13 -2.82 17.26 44.97 0.78 -2.05 16 24 C -0.21 -5.32 9.95 22.38 0.22 -5.09 16 25 C 0.17 5.07 6.72 22.84 0.15 5.22 16 26 O -0.50 -18.23 11.57 -68.82 -0.80 -19.03 16 27 C -0.13 -5.76 6.53 22.71 0.15 -5.62 16 28 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.11 5.40 5.62 -2.91 -0.02 5.39 16 30 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.19 1.70 6.35 -2.91 -0.02 1.68 16 34 H 0.19 1.24 6.24 -2.91 -0.02 1.22 16 35 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.15 3.50 8.06 -2.92 -0.02 3.47 16 37 H 0.41 14.21 9.06 -74.06 -0.67 13.54 16 38 H 0.09 4.29 6.99 -2.91 -0.02 4.27 16 Total: -1.00 -84.98 338.40 6.18 -78.80 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.47 Total: 30.17 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 3.44 Total: -43.16 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.30 Total: -57.40 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.84 Total: -52.92 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -84.98 6.18 -78.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757476223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -84.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds