Wall clock time and date at job start Tue Mar 31 2020 14:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86795 * 119.99888 * 2 1 4 4 H 1.48497 * 109.47076 * 239.99441 * 3 2 1 5 5 H 1.48499 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47221 * 119.99804 * 3 2 1 7 7 C 1.38653 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.35764 * 117.00014 * 185.04913 * 9 7 2 11 11 C 1.39055 * 119.98455 * 174.45179 * 10 9 7 12 12 C 1.38251 * 120.28568 * 180.02562 * 11 10 9 13 13 C 1.37966 * 120.24838 * 359.97438 * 12 11 10 14 14 C 1.39906 * 119.96389 * 0.02562 * 13 12 11 15 15 C 1.47140 * 120.14263 * 179.72499 * 14 13 12 16 16 C 1.34984 * 120.00068 * 359.97438 * 15 14 13 17 17 C 1.46338 * 119.99943 * 180.02562 * 16 15 14 18 18 O 1.21769 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.47515 * 119.99780 * 180.02562 * 17 16 15 20 20 C 1.39798 * 120.16920 * 359.97438 * 19 17 16 21 21 C 1.37662 * 119.93332 * 180.02562 * 20 19 17 22 22 C 1.38873 * 120.27182 * 0.02562 * 21 20 19 23 23 F 1.35105 * 119.82604 * 179.97438 * 22 21 20 24 24 C 1.38365 * 120.34222 * 359.97438 * 22 21 20 25 25 C 1.38557 * 120.06203 * 359.72574 * 24 22 21 26 26 O 1.35660 * 120.13777 * 180.27750 * 25 24 22 27 27 C 1.38524 * 119.98032 * 354.45918 * 10 9 7 28 28 H 0.97003 * 119.99569 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.85417 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.87594 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.01589 * 180.02562 * 13 12 11 32 32 H 1.08007 * 120.00105 * 180.02562 * 15 14 13 33 33 H 1.07997 * 119.99816 * 0.02562 * 16 15 14 34 34 H 1.08008 * 120.03420 * 0.03108 * 20 19 17 35 35 H 1.07995 * 119.85957 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.96907 * 180.02562 * 24 22 21 37 37 H 0.96709 * 113.99781 * 270.27204 * 26 25 24 38 38 H 1.08003 * 120.12654 * 359.97161 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5047 0.1075 11 6 1.4338 -4.7351 0.2302 12 6 2.1765 -5.8961 0.3401 13 6 3.5551 -5.8429 0.3284 14 6 4.2058 -4.6106 0.2055 15 6 5.6759 -4.5488 0.1987 16 6 6.3997 -5.6826 0.3117 17 6 7.8617 -5.6210 0.3055 18 8 8.4255 -4.5471 0.1980 19 6 8.6526 -6.8602 0.4284 20 6 8.0090 -8.0951 0.5515 21 6 8.7518 -9.2484 0.6665 22 6 10.1394 -9.1908 0.6612 23 9 10.8595 -10.3283 0.7751 24 6 10.7881 -7.9747 0.5400 25 6 10.0542 -6.8058 0.4172 26 8 10.6887 -5.6132 0.2926 27 6 3.4535 -3.4377 0.0947 28 1 -0.4849 0.8401 -0.0004 29 1 0.3550 -4.7839 0.2404 30 1 1.6756 -6.8481 0.4354 31 1 4.1315 -6.7522 0.4141 32 1 6.1760 -3.5961 0.1042 33 1 5.8996 -6.6351 0.4067 34 1 6.9301 -8.1443 0.5564 35 1 8.2535 -10.2018 0.7611 36 1 11.8674 -7.9370 0.5362 37 1 10.8759 -5.1774 1.1353 38 1 3.9491 -2.4828 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757476227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:36 Heat of formation + Delta-G solvation = -79.255752 kcal Electronic energy + Delta-G solvation = -25210.579920 eV Core-core repulsion = 21092.296689 eV Total energy + Delta-G solvation = -4118.283231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.42590 -40.56595 -39.20957 -38.43294 -36.98806 -36.75140 -33.61690 -32.29753 -31.66416 -30.39529 -29.71511 -28.65151 -25.56524 -24.96003 -23.67326 -22.77780 -21.79973 -20.79383 -19.14030 -19.01545 -17.87868 -17.55572 -17.12651 -16.95030 -16.46819 -16.08644 -15.40012 -15.31664 -15.15134 -14.59517 -14.51134 -14.26439 -14.21040 -14.05377 -13.76510 -13.67061 -13.38051 -12.93992 -12.48880 -12.33626 -12.17392 -11.84102 -11.76935 -11.66107 -11.29889 -11.04187 -10.90989 -10.75117 -10.50002 -9.89505 -9.79896 -9.50382 -9.48280 -9.11237 -8.89952 -7.98000 -7.38774 -6.52392 -4.12560 0.04284 0.65716 0.89351 2.13705 2.26522 2.84209 3.10712 3.11441 3.14024 3.38319 3.50431 3.84809 3.91189 3.96356 4.23898 4.46157 4.47287 4.73460 4.93350 4.99428 5.03340 5.14915 5.18642 5.34375 5.42581 5.50525 5.57959 5.66139 5.68163 5.78510 5.94323 6.01825 6.20070 6.26872 6.38889 6.58215 6.66561 6.93823 7.05710 7.17268 7.25526 7.27652 7.53983 7.60313 7.90639 8.92696 9.59173 10.64974 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002279 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.569880 B =12284.211181 C =13716.893986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.145 3.855 11 C -0.172 4.172 12 C -0.083 4.083 13 C -0.185 4.185 14 C -0.053 4.053 15 C 0.021 3.979 16 C -0.267 4.267 17 C 0.424 3.576 18 O -0.450 6.450 19 C -0.193 4.193 20 C -0.028 4.028 21 C -0.176 4.176 22 C 0.142 3.858 23 F -0.133 7.133 24 C -0.200 4.200 25 C 0.193 3.807 26 O -0.475 6.475 27 C -0.200 4.200 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.400 0.600 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.855 -16.674 3.017 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.092 3.908 11 C -0.191 4.191 12 C -0.102 4.102 13 C -0.204 4.204 14 C -0.053 4.053 15 C 0.002 3.998 16 C -0.285 4.285 17 C 0.306 3.694 18 O -0.328 6.328 19 C -0.195 4.195 20 C -0.046 4.046 21 C -0.195 4.195 22 C 0.122 3.878 23 F -0.111 7.111 24 C -0.219 4.219 25 C 0.147 3.853 26 O -0.287 6.287 27 C -0.219 4.219 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.259 0.741 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.706 -16.029 2.351 23.271 hybrid contribution 0.662 0.533 0.478 0.975 sum 17.368 -15.496 2.829 23.448 Atomic orbital electron populations 1.70027 1.05981 1.27961 1.45466 1.25293 0.95860 0.98880 0.96304 0.85782 0.78747 0.79631 0.79343 1.19381 1.20197 1.19386 1.21272 0.91775 0.80751 1.53384 0.89068 1.84002 1.34129 1.11366 1.78234 1.19268 0.90026 0.88377 0.93166 1.20436 0.99925 0.90328 1.08454 1.20601 0.93510 0.96950 0.99098 1.20821 0.94336 0.96017 1.09177 1.18683 0.91182 0.93666 1.01753 1.22727 0.92781 0.98558 0.85709 1.23203 0.93505 1.00051 1.11742 1.20127 0.89084 0.87056 0.73121 1.90682 1.74149 1.31025 1.36938 1.21085 0.93650 0.96239 1.08546 1.21288 1.00972 0.89953 0.92383 1.21166 0.91750 1.00577 1.06010 1.17714 0.89513 0.81685 0.98886 1.91540 1.78035 1.48616 1.92910 1.21384 1.01866 0.91015 1.07656 1.18287 0.88751 0.85723 0.92514 1.84749 1.77917 1.31097 1.34919 1.21434 0.93805 0.98132 1.08543 0.91838 0.86180 0.86520 0.86964 0.85268 0.84938 0.83246 0.83726 0.83575 0.74069 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.40 -10.74 9.48 30.89 0.29 -10.44 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 9 O -0.17 -4.78 9.76 0.00 0.00 -4.78 16 10 C 0.15 3.34 6.64 -39.17 -0.26 3.08 16 11 C -0.17 -3.37 9.99 -39.27 -0.39 -3.77 16 12 C -0.08 -1.34 10.02 -39.68 -0.40 -1.74 16 13 C -0.18 -2.85 9.41 -39.06 -0.37 -3.22 16 14 C -0.05 -0.91 5.87 -105.08 -0.62 -1.52 16 15 C 0.02 0.31 9.46 -37.13 -0.35 -0.04 16 16 C -0.27 -3.33 8.90 -37.48 -0.33 -3.66 16 17 C 0.42 5.48 7.06 -32.55 -0.23 5.25 16 18 O -0.45 -7.05 15.05 -16.75 -0.25 -7.30 16 19 C -0.19 -2.03 5.89 -104.77 -0.62 -2.65 16 20 C -0.03 -0.22 9.44 -39.21 -0.37 -0.59 16 21 C -0.18 -1.28 10.00 -39.56 -0.40 -1.67 16 22 C 0.14 1.18 7.30 -39.30 -0.29 0.89 16 23 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 24 C -0.20 -1.70 9.95 -39.42 -0.39 -2.09 16 25 C 0.19 1.95 6.72 -38.70 -0.26 1.69 16 26 O -0.48 -4.95 11.57 -40.56 -0.47 -5.41 16 27 C -0.20 -4.12 8.91 -38.90 -0.35 -4.47 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.34 6.16 -52.49 -0.32 1.02 16 32 H 0.13 1.97 7.52 -52.48 -0.39 1.58 16 33 H 0.13 1.31 4.33 -52.49 -0.23 1.08 16 34 H 0.15 0.88 6.22 -52.48 -0.33 0.55 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.40 2.52 9.06 45.56 0.41 2.94 16 38 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -32.25 343.39 -7.45 -39.69 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.25 Total: 6.43 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -5.42 Total: -23.93 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.76 Total: -23.88 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.72 Total: -17.50 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.25 -7.45 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757476227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.564 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds