Wall clock time and date at job start Tue Mar 31 2020 14:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86795 * 119.99888 * 2 1 4 4 H 1.48497 * 109.47076 * 239.99441 * 3 2 1 5 5 H 1.48499 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47221 * 119.99804 * 3 2 1 7 7 C 1.38653 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.35764 * 117.00014 * 185.04913 * 9 7 2 11 11 C 1.39055 * 119.98455 * 174.45179 * 10 9 7 12 12 C 1.38251 * 120.28568 * 180.02562 * 11 10 9 13 13 C 1.37966 * 120.24838 * 359.97438 * 12 11 10 14 14 C 1.39906 * 119.96389 * 0.02562 * 13 12 11 15 15 C 1.47140 * 120.14263 * 179.72499 * 14 13 12 16 16 C 1.34984 * 120.00068 * 359.97438 * 15 14 13 17 17 C 1.46338 * 119.99943 * 180.02562 * 16 15 14 18 18 O 1.21769 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.47515 * 119.99780 * 180.02562 * 17 16 15 20 20 C 1.39798 * 120.16920 * 359.97438 * 19 17 16 21 21 C 1.37662 * 119.93332 * 180.02562 * 20 19 17 22 22 C 1.38873 * 120.27182 * 0.02562 * 21 20 19 23 23 F 1.35105 * 119.82604 * 179.97438 * 22 21 20 24 24 C 1.38365 * 120.34222 * 359.97438 * 22 21 20 25 25 C 1.38557 * 120.06203 * 359.72574 * 24 22 21 26 26 O 1.35660 * 120.13777 * 180.27750 * 25 24 22 27 27 C 1.38524 * 119.98032 * 354.45918 * 10 9 7 28 28 H 0.97003 * 119.99569 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.85417 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.87594 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.01589 * 180.02562 * 13 12 11 32 32 H 1.08007 * 120.00105 * 180.02562 * 15 14 13 33 33 H 1.07997 * 119.99816 * 0.02562 * 16 15 14 34 34 H 1.08008 * 120.03420 * 0.03108 * 20 19 17 35 35 H 1.07995 * 119.85957 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.96907 * 180.02562 * 24 22 21 37 37 H 0.96709 * 113.99781 * 270.27204 * 26 25 24 38 38 H 1.08003 * 120.12654 * 359.97161 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5047 0.1075 11 6 1.4338 -4.7351 0.2302 12 6 2.1765 -5.8961 0.3401 13 6 3.5551 -5.8429 0.3284 14 6 4.2058 -4.6106 0.2055 15 6 5.6759 -4.5488 0.1987 16 6 6.3997 -5.6826 0.3117 17 6 7.8617 -5.6210 0.3055 18 8 8.4255 -4.5471 0.1980 19 6 8.6526 -6.8602 0.4284 20 6 8.0090 -8.0951 0.5515 21 6 8.7518 -9.2484 0.6665 22 6 10.1394 -9.1908 0.6612 23 9 10.8595 -10.3283 0.7751 24 6 10.7881 -7.9747 0.5400 25 6 10.0542 -6.8058 0.4172 26 8 10.6887 -5.6132 0.2926 27 6 3.4535 -3.4377 0.0947 28 1 -0.4849 0.8401 -0.0004 29 1 0.3550 -4.7839 0.2404 30 1 1.6756 -6.8481 0.4354 31 1 4.1315 -6.7522 0.4141 32 1 6.1760 -3.5961 0.1042 33 1 5.8996 -6.6351 0.4067 34 1 6.9301 -8.1443 0.5564 35 1 8.2535 -10.2018 0.7611 36 1 11.8674 -7.9370 0.5362 37 1 10.8759 -5.1774 1.1353 38 1 3.9491 -2.4828 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757476227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:35 Heat of formation + Delta-G solvation = -98.456255 kcal Electronic energy + Delta-G solvation = -25211.412517 eV Core-core repulsion = 21092.296689 eV Total energy + Delta-G solvation = -4119.115827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.07127 -41.39328 -40.76984 -39.43391 -38.35479 -37.66017 -34.95498 -34.15180 -32.48772 -31.19476 -30.96605 -30.06849 -27.38703 -26.07844 -24.42750 -23.67327 -23.33212 -21.94034 -20.37935 -19.81120 -19.47247 -18.79448 -17.96484 -17.85392 -17.47162 -16.81313 -16.73626 -16.58328 -16.12306 -15.92823 -15.80225 -15.55738 -15.38731 -15.17804 -14.93314 -14.78730 -14.37702 -14.08786 -14.01042 -13.60582 -13.29650 -13.23445 -12.96538 -12.67986 -12.54602 -12.43320 -12.20845 -12.03958 -12.01002 -11.33529 -11.22218 -10.75931 -10.74416 -10.10740 -9.80191 -9.39010 -8.95438 -8.48814 -6.17352 -0.84859 -0.16720 0.05762 0.69692 1.03867 1.33581 1.43536 1.48791 1.92405 2.15925 2.55620 2.79760 2.85892 2.93045 3.18623 3.33705 3.49326 3.61397 3.82843 3.92797 3.94612 4.11491 4.20336 4.30263 4.40209 4.46912 4.56363 4.61518 4.78915 4.91945 4.97902 5.05241 5.06340 5.09268 5.13956 5.21782 5.37711 5.62010 5.62773 5.65924 5.76437 5.99918 6.15863 6.54923 6.66253 6.96050 7.75628 8.73777 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002279 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.569880 B =12284.211181 C =13716.893986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.098 0.902 9 O -0.231 6.231 10 C 0.106 3.894 11 C -0.188 4.188 12 C -0.069 4.069 13 C -0.160 4.160 14 C -0.046 4.046 15 C -0.014 4.014 16 C -0.224 4.224 17 C 0.422 3.578 18 O -0.485 6.485 19 C -0.214 4.214 20 C -0.017 4.017 21 C -0.168 4.168 22 C 0.140 3.860 23 F -0.135 7.135 24 C -0.203 4.203 25 C 0.182 3.818 26 O -0.495 6.495 27 C -0.223 4.223 28 H 0.273 0.727 29 H 0.118 0.882 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.113 0.887 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.413 0.587 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.924 -20.881 3.539 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.833 3.167 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.137 6.137 10 C 0.056 3.944 11 C -0.207 4.207 12 C -0.086 4.086 13 C -0.178 4.178 14 C -0.046 4.046 15 C -0.033 4.033 16 C -0.242 4.242 17 C 0.306 3.694 18 O -0.365 6.365 19 C -0.216 4.216 20 C -0.035 4.035 21 C -0.186 4.186 22 C 0.120 3.880 23 F -0.113 7.113 24 C -0.222 4.222 25 C 0.136 3.864 26 O -0.309 6.309 27 C -0.242 4.242 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.184 0.816 31 H 0.185 0.815 32 H 0.131 0.869 33 H 0.190 0.810 34 H 0.197 0.803 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.274 0.726 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.813 -20.298 2.885 27.826 hybrid contribution 0.330 1.344 0.357 1.429 sum 19.143 -18.955 3.241 27.134 Atomic orbital electron populations 1.70163 1.07839 1.28852 1.48697 1.26502 0.96837 1.02537 0.95892 0.84722 0.77488 0.74687 0.79831 1.18412 1.19359 1.18333 1.21701 0.92322 0.81572 1.53462 0.88507 1.83954 1.35664 1.12460 1.81667 1.19864 0.91199 0.88403 0.94908 1.20762 1.00472 0.90542 1.08969 1.21151 0.93882 0.97284 0.96304 1.21483 0.94499 0.96877 1.04943 1.18900 0.92195 0.93262 1.00222 1.22488 0.91666 0.99302 0.89803 1.23553 0.93288 1.00482 1.06894 1.20520 0.89448 0.87515 0.71931 1.90684 1.74794 1.32654 1.38383 1.20979 0.93608 0.96074 1.10938 1.21575 1.02368 0.88743 0.90801 1.21477 0.91096 1.01647 1.04405 1.17920 0.90240 0.81373 0.98440 1.91542 1.78262 1.48667 1.92862 1.21456 1.02474 0.90752 1.07562 1.18459 0.89014 0.85922 0.93006 1.84705 1.78107 1.31716 1.36350 1.21445 0.93311 0.99179 1.10312 0.91788 0.86397 0.81613 0.81469 0.86904 0.80986 0.80299 0.80785 0.82634 0.72589 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.10 13.67 21.61 0.30 -55.81 16 2 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 3 Si 1.01 43.36 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -24.17 9.48 67.92 0.64 -23.53 16 8 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.70 9.76 -22.90 -0.22 -13.92 16 10 C 0.11 5.13 6.64 22.53 0.15 5.28 16 11 C -0.19 -7.36 9.99 22.47 0.22 -7.14 16 12 C -0.07 -1.91 10.02 22.21 0.22 -1.69 16 13 C -0.16 -4.10 9.41 22.61 0.21 -3.89 16 14 C -0.05 -1.49 5.87 -20.16 -0.12 -1.61 16 15 C -0.01 -0.39 9.46 23.86 0.23 -0.17 16 16 C -0.22 -4.66 8.90 23.63 0.21 -4.45 16 17 C 0.42 9.81 7.06 26.83 0.19 10.00 16 18 O -0.48 -14.90 15.05 16.35 0.25 -14.66 16 19 C -0.21 -3.78 5.89 -19.96 -0.12 -3.90 16 20 C -0.02 -0.18 9.44 22.51 0.21 0.03 16 21 C -0.17 -1.57 10.00 22.29 0.22 -1.34 16 22 C 0.14 1.83 7.30 22.45 0.16 1.99 16 23 F -0.13 -1.92 17.26 44.97 0.78 -1.14 16 24 C -0.20 -2.97 9.95 22.38 0.22 -2.74 16 25 C 0.18 3.31 6.72 22.84 0.15 3.46 16 26 O -0.49 -9.95 11.57 -68.84 -0.80 -10.74 16 27 C -0.22 -9.58 8.91 22.71 0.20 -9.38 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.17 2.50 6.16 -2.91 -0.02 2.48 16 32 H 0.11 3.54 7.52 -2.91 -0.02 3.52 16 33 H 0.17 2.08 4.33 -2.91 -0.01 2.07 16 34 H 0.18 0.72 6.22 -2.91 -0.02 0.70 16 35 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.41 5.10 9.06 -74.05 -0.67 4.43 16 38 H 0.11 5.17 5.63 -2.91 -0.02 5.16 16 Total: -1.00 -78.68 343.39 6.30 -72.38 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.48 Total: 18.23 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.49 Total: -39.72 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.81 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.77 Total: -39.32 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.68 6.30 -72.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757476227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.075 kcal (2) G-P(sol) polarization free energy of solvation -78.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds