Wall clock time and date at job start Tue Mar 31 2020 14:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47157 * 274.52561 * 3 2 1 5 5 H 1.48497 * 109.47121 * 34.52416 * 3 2 1 6 6 H 1.48502 * 109.47237 * 154.52558 * 3 2 1 7 7 C 1.40245 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99666 * 198.01768 * 7 2 1 9 9 C 1.41088 * 120.00302 * 18.01726 * 7 2 1 10 10 C 1.40897 * 120.10196 * 205.06848 * 9 7 2 11 11 C 1.36297 * 119.90219 * 180.02562 * 10 9 7 12 12 C 1.40073 * 120.09679 * 0.02562 * 11 10 9 13 13 C 1.47501 * 119.89696 * 179.97438 * 12 11 10 14 14 O 1.21512 * 120.00440 * 359.97438 * 13 12 11 15 15 O 1.34783 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00100 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47160 * 180.02562 * 16 15 13 18 18 O 1.21255 * 119.99769 * 0.02562 * 17 16 15 19 19 C 1.47168 * 120.00161 * 179.97438 * 17 16 15 20 20 C 1.39876 * 120.15871 * 0.02562 * 19 17 16 21 21 C 1.37876 * 119.87471 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.20240 * 359.97438 * 21 20 19 23 23 C 1.38598 * 120.32419 * 0.04404 * 22 21 20 24 24 F 1.35102 * 119.93530 * 179.97438 * 23 22 21 25 25 C 1.38136 * 120.11914 * 359.95751 * 23 22 21 26 26 C 1.40064 * 120.19884 * 0.25564 * 12 11 10 27 27 C 1.36300 * 120.10441 * 359.47737 * 26 12 11 28 28 H 0.97003 * 120.00096 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.04746 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.95011 * 179.97438 * 11 10 9 31 31 H 1.09005 * 109.47053 * 60.00635 * 16 15 13 32 32 H 1.08994 * 109.47430 * 300.00525 * 16 15 13 33 33 H 1.08004 * 120.06058 * 359.96062 * 20 19 17 34 34 H 1.07998 * 119.89573 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.83661 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.10080 * 180.30379 * 25 23 22 37 37 H 1.08005 * 119.94983 * 179.75031 * 26 12 11 38 38 H 1.08001 * 120.05485 * 180.25402 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3922 2.1017 -1.3957 5 1 1.4889 2.6232 0.7935 6 1 3.5825 1.4145 0.6022 7 6 2.0076 -1.2146 0.0005 8 1 3.0479 -1.2373 0.2899 9 6 1.3541 -2.4067 -0.3768 10 6 1.8212 -3.6489 0.0964 11 6 1.1871 -4.7980 -0.2712 12 6 0.0729 -4.7453 -1.1185 13 6 -0.6096 -5.9917 -1.5140 14 8 -0.2050 -7.0621 -1.1052 15 8 -1.6822 -5.9434 -2.3287 16 6 -2.3033 -7.2088 -2.6767 17 6 -3.4771 -6.9585 -3.5881 18 8 -3.7617 -5.8255 -3.9127 19 6 -4.2772 -8.0894 -4.0850 20 6 -3.9514 -9.3978 -3.7130 21 6 -4.7053 -10.4529 -4.1815 22 6 -5.7831 -10.2210 -5.0179 23 6 -6.1131 -8.9279 -5.3921 24 9 -7.1666 -8.7106 -6.2094 25 6 -5.3669 -7.8610 -4.9305 26 6 -0.3914 -3.5132 -1.5961 27 6 0.2332 -2.3586 -1.2293 28 1 -0.4850 0.8401 -0.0004 29 1 2.6805 -3.6904 0.7494 30 1 1.5447 -5.7506 0.0907 31 1 -2.6467 -7.7065 -1.7697 32 1 -1.5769 -7.8422 -3.1858 33 1 -3.1108 -9.5813 -3.0602 34 1 -4.4543 -11.4632 -3.8942 35 1 -6.3699 -11.0518 -5.3812 36 1 -5.6272 -6.8531 -5.2183 37 1 -1.2484 -3.4776 -2.2524 38 1 -0.1280 -1.4086 -1.5948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758678422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:33 Heat of formation + Delta-G solvation = -138.864479 kcal Electronic energy + Delta-G solvation = -25226.948420 eV Core-core repulsion = 21106.080361 eV Total energy + Delta-G solvation = -4120.868059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.01097 -41.64035 -40.82680 -39.35364 -39.05609 -37.20211 -35.75841 -32.96756 -32.26803 -31.90171 -31.39025 -29.80277 -27.84804 -25.27329 -24.07859 -23.60973 -22.84314 -21.73789 -21.29642 -19.41053 -19.08365 -18.37070 -18.07200 -17.62528 -17.42025 -17.25212 -16.98973 -16.72942 -16.36050 -15.93005 -15.82926 -15.75134 -15.19093 -14.89839 -14.73637 -14.24362 -14.11462 -14.07645 -13.90940 -13.53004 -13.30100 -13.23749 -13.01009 -12.89854 -12.67095 -12.43108 -12.39931 -11.82270 -11.81051 -11.44621 -11.38056 -11.16369 -10.97750 -10.26729 -9.90034 -9.64648 -9.54453 -8.86274 -6.56348 -0.63732 0.06374 0.21487 1.11077 1.12752 1.35487 1.40729 1.54601 1.54826 1.86199 2.14053 2.51431 2.66505 2.71298 3.21224 3.58847 3.61149 3.74550 3.94292 4.01457 4.05355 4.08320 4.17778 4.23657 4.35993 4.41669 4.65254 4.90885 4.92142 4.96700 4.97999 5.09430 5.10717 5.18062 5.20635 5.31331 5.54962 5.71130 5.79304 5.88864 5.95454 6.13653 6.22179 6.48237 6.68918 6.80832 6.96070 8.08695 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002096 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.395748 B =13356.659003 C =14426.162775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.457 4.457 8 H 0.096 0.904 9 C 0.105 3.895 10 C -0.248 4.248 11 C -0.019 4.019 12 C -0.292 4.292 13 C 0.523 3.477 14 O -0.557 6.557 15 O -0.357 6.357 16 C 0.014 3.986 17 C 0.402 3.598 18 O -0.468 6.468 19 C -0.148 4.148 20 C -0.075 4.075 21 C -0.089 4.089 22 C -0.109 4.109 23 C 0.071 3.929 24 F -0.145 7.145 25 C -0.112 4.112 26 C -0.042 4.042 27 C -0.205 4.205 28 H 0.299 0.701 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -16.677 -7.238 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.114 0.886 9 C 0.101 3.899 10 C -0.267 4.267 11 C -0.037 4.037 12 C -0.295 4.295 13 C 0.376 3.624 14 O -0.452 6.452 15 O -0.275 6.275 16 C -0.060 4.060 17 C 0.280 3.720 18 O -0.343 6.343 19 C -0.149 4.149 20 C -0.093 4.093 21 C -0.106 4.106 22 C -0.128 4.128 23 C 0.052 3.948 24 F -0.124 7.124 25 C -0.131 4.131 26 C -0.061 4.061 27 C -0.224 4.224 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.183 0.817 34 H 0.200 0.800 35 H 0.187 0.813 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.048 -16.234 -7.325 19.977 hybrid contribution -0.230 0.976 -0.196 1.022 sum -9.278 -15.258 -7.521 19.377 Atomic orbital electron populations 1.69781 1.09583 1.32005 1.30145 1.27094 0.95530 1.05348 0.90745 0.85019 0.79313 0.74804 0.79696 1.18520 1.18973 1.17396 1.20271 0.99073 0.91888 1.37059 0.88596 1.18209 0.90709 0.93464 0.87494 1.20889 1.05468 0.92185 1.08180 1.20531 0.92242 0.97924 0.93020 1.18430 1.05298 0.89886 1.15843 1.21253 0.77048 0.89571 0.74550 1.90672 1.66419 1.31864 1.56236 1.86656 1.43164 1.35293 1.62362 1.23510 0.95397 0.85664 1.01449 1.22554 0.83078 0.88393 0.77967 1.90589 1.66497 1.26459 1.50800 1.19922 0.97947 0.94782 1.02276 1.21957 0.99813 0.89992 0.97494 1.21500 0.92883 1.01229 0.95033 1.21857 0.98488 0.95034 0.97399 1.17735 0.87422 0.94781 0.94854 1.91510 1.54702 1.95780 1.70415 1.21346 0.94840 0.99761 0.97182 1.20755 0.97038 0.92029 0.96262 1.20989 1.01164 0.97015 1.03237 0.88959 0.86437 0.86292 0.85587 0.85457 0.81659 0.79968 0.81267 0.85177 0.87462 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.49 10.99 21.87 0.24 -38.25 16 2 C 0.03 1.52 5.13 85.36 0.44 1.96 16 3 Si 0.99 34.32 29.60 68.60 2.03 36.35 16 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.27 -8.75 7.11 99.48 0.71 -8.05 16 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 7 C -0.46 -22.54 9.04 23.46 0.21 -22.33 16 8 H 0.10 4.42 7.91 -2.91 -0.02 4.40 16 9 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 10 C -0.25 -11.84 9.73 22.47 0.22 -11.62 16 11 C -0.02 -0.86 9.52 22.26 0.21 -0.65 16 12 C -0.29 -13.83 5.89 -19.95 -0.12 -13.94 16 13 C 0.52 22.38 7.89 70.26 0.55 22.94 16 14 O -0.56 -23.67 16.11 19.80 0.32 -23.35 16 15 O -0.36 -13.84 8.98 -50.55 -0.45 -14.30 16 16 C 0.01 0.36 4.57 71.24 0.33 0.69 16 17 C 0.40 10.80 7.20 28.03 0.20 11.00 16 18 O -0.47 -16.86 16.49 15.85 0.26 -16.59 16 19 C -0.15 -2.91 5.87 -20.16 -0.12 -3.03 16 20 C -0.07 -0.87 9.47 22.58 0.21 -0.66 16 21 C -0.09 -0.66 10.03 22.22 0.22 -0.44 16 22 C -0.11 -1.11 10.02 22.39 0.22 -0.88 16 23 C 0.07 1.23 7.29 22.33 0.16 1.39 16 24 F -0.15 -2.86 17.26 44.97 0.78 -2.08 16 25 C -0.11 -2.35 9.58 22.63 0.22 -2.13 16 26 C -0.04 -2.06 9.55 22.26 0.21 -1.85 16 27 C -0.20 -10.67 8.63 22.47 0.19 -10.47 16 28 H 0.30 12.93 8.29 -92.71 -0.77 12.16 16 29 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.12 5.02 7.63 -2.91 -0.02 5.00 16 31 H 0.13 2.74 8.08 -2.38 -0.02 2.72 16 32 H 0.13 2.73 8.08 -2.39 -0.02 2.71 16 33 H 0.17 1.16 7.05 -2.91 -0.02 1.14 16 34 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 35 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.13 3.09 7.65 -2.91 -0.02 3.06 16 37 H 0.11 5.06 7.59 -2.91 -0.02 5.04 16 38 H 0.11 5.83 6.20 -2.91 -0.02 5.81 16 Total: -1.00 -66.51 348.38 7.54 -58.97 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.12 Total: 24.00 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.25 Total: -24.74 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.24 Total: -38.25 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: 0.13 Total: -54.25 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -66.51 7.54 -58.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758678422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.898 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds