Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47254 * 274.53182 * 3 2 1 5 5 H 1.48503 * 109.46722 * 34.53457 * 3 2 1 6 6 H 1.48495 * 109.46738 * 154.53049 * 3 2 1 7 7 C 1.40242 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 198.01032 * 7 2 1 9 9 C 1.41091 * 120.00249 * 18.01443 * 7 2 1 10 10 C 1.40892 * 120.10014 * 205.06920 * 9 7 2 11 11 C 1.36304 * 119.90050 * 180.02562 * 10 9 7 12 12 C 1.40063 * 120.09734 * 0.02562 * 11 10 9 13 13 C 1.47520 * 119.89707 * 179.97438 * 12 11 10 14 14 O 1.21497 * 119.99928 * 359.97438 * 13 12 11 15 15 O 1.34779 * 119.99642 * 180.02562 * 13 12 11 16 16 C 1.45194 * 116.99640 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47271 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99601 * 359.97438 * 17 16 15 19 19 C 1.47008 * 120.00546 * 180.02562 * 17 16 15 20 20 C 1.39951 * 120.14249 * 359.71876 * 19 17 16 21 21 C 1.37749 * 119.85013 * 179.74531 * 20 19 17 22 22 C 1.38716 * 120.14521 * 0.53785 * 21 20 19 23 23 F 1.35103 * 119.85218 * 179.69416 * 22 21 20 24 24 C 1.38720 * 120.29592 * 359.71731 * 22 21 20 25 25 C 1.37743 * 120.14488 * 0.02562 * 24 22 21 26 26 C 1.40065 * 120.20196 * 0.24937 * 12 11 10 27 27 C 1.36297 * 120.09939 * 359.48603 * 26 12 11 28 28 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05316 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.94896 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47448 * 299.99690 * 16 15 13 32 32 H 1.09003 * 109.47315 * 59.99646 * 16 15 13 33 33 H 1.08001 * 120.07054 * 0.02562 * 20 19 17 34 34 H 1.07992 * 119.92417 * 180.25339 * 21 20 19 35 35 H 1.07999 * 119.92879 * 179.97438 * 24 22 21 36 36 H 1.08003 * 120.07331 * 179.97438 * 25 24 22 37 37 H 1.08007 * 119.95003 * 179.74927 * 26 12 11 38 38 H 1.08002 * 120.05175 * 180.23308 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3921 2.1018 -1.3957 5 1 1.4890 2.6231 0.7937 6 1 3.5825 1.4143 0.6021 7 6 2.0076 -1.2145 -0.0005 8 1 3.0479 -1.2376 0.2886 9 6 1.3540 -2.4063 -0.3789 10 6 1.8211 -3.6489 0.0932 11 6 1.1870 -4.7978 -0.2754 12 6 0.0729 -4.7443 -1.1226 13 6 -0.6098 -5.9905 -1.5191 14 8 -0.2051 -7.0611 -1.1113 15 8 -1.6817 -5.9415 -2.3346 16 6 -2.3028 -7.2066 -2.6835 17 6 -3.4767 -6.9556 -3.5947 18 8 -3.7619 -5.8219 -3.9177 19 6 -4.2767 -8.0846 -4.0910 20 6 -3.9473 -9.3944 -3.7241 21 6 -4.7042 -10.4475 -4.1884 22 6 -5.7840 -10.2128 -5.0269 23 9 -6.5186 -11.2505 -5.4839 24 6 -6.1127 -8.9174 -5.3988 25 6 -5.3673 -7.8550 -4.9373 26 6 -0.3915 -3.5118 -1.5990 27 6 0.2331 -2.3576 -1.2313 28 1 -0.4850 0.8401 0.0004 29 1 2.6809 -3.6912 0.7454 30 1 1.5446 -5.7507 0.0857 31 1 -1.5763 -7.8399 -3.1926 32 1 -2.6469 -7.7047 -1.7771 33 1 -3.1043 -9.5787 -3.0746 34 1 -4.4535 -11.4583 -3.9027 35 1 -6.9544 -8.7416 -6.0523 36 1 -5.6240 -6.8470 -5.2279 37 1 -1.2486 -3.4757 -2.2553 38 1 -0.1280 -1.4073 -1.5961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758689557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = -127.147630 kcal Electronic energy + Delta-G solvation = -25169.203373 eV Core-core repulsion = 21048.843394 eV Total energy + Delta-G solvation = -4120.359979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.41633 -40.43494 -39.49536 -38.24757 -37.41649 -35.60982 -33.97058 -32.09296 -31.45961 -30.44907 -29.52977 -28.59643 -26.08793 -24.05416 -23.38330 -22.32137 -20.98763 -20.31053 -20.02762 -18.26538 -17.57928 -17.31208 -17.04348 -16.37247 -16.30096 -16.14105 -16.05363 -15.46218 -15.01020 -14.58162 -14.51376 -14.11633 -14.02969 -13.55254 -13.43598 -13.22565 -13.00038 -12.84725 -12.49426 -12.42403 -12.12767 -11.87086 -11.51562 -11.44150 -11.33864 -11.01088 -10.74066 -10.38463 -10.18111 -9.99559 -9.67582 -9.63981 -9.47972 -9.40159 -9.23241 -7.77357 -7.66625 -7.11709 -4.69913 0.10238 0.73441 1.97891 2.00852 2.85085 2.89130 2.92193 2.95535 3.01852 3.19092 3.57806 3.68405 3.69265 3.95638 4.17444 4.35097 4.43812 4.67489 4.70341 4.90951 5.11366 5.13907 5.37132 5.39971 5.49488 5.56419 5.65801 5.75120 5.90328 6.19810 6.24397 6.28609 6.72353 6.78996 6.90176 6.96405 7.06258 7.27310 7.39980 7.63928 7.75607 7.82031 7.98423 8.33625 8.54205 8.63709 8.67468 9.79737 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.029022 B = 0.002011 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.547878 B =13921.394053 C =14800.505793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.276 4.276 13 C 0.515 3.485 14 O -0.553 6.553 15 O -0.341 6.341 16 C 0.022 3.978 17 C 0.395 3.605 18 O -0.419 6.419 19 C -0.171 4.171 20 C -0.045 4.045 21 C -0.164 4.164 22 C 0.128 3.872 23 F -0.134 7.134 24 C -0.165 4.165 25 C -0.030 4.030 26 C -0.041 4.041 27 C -0.185 4.185 28 H 0.289 0.711 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -13.109 -8.001 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.258 4.258 11 C -0.035 4.035 12 C -0.278 4.278 13 C 0.368 3.632 14 O -0.447 6.447 15 O -0.259 6.259 16 C -0.053 4.053 17 C 0.270 3.730 18 O -0.291 6.291 19 C -0.173 4.173 20 C -0.063 4.063 21 C -0.183 4.183 22 C 0.109 3.891 23 F -0.113 7.113 24 C -0.184 4.184 25 C -0.048 4.048 26 C -0.060 4.060 27 C -0.204 4.204 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.122 0.878 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.842 -12.684 -8.069 17.969 hybrid contribution 0.075 0.188 0.009 0.202 sum -9.767 -12.497 -8.061 17.791 Atomic orbital electron populations 1.69747 1.08007 1.30423 1.30187 1.26176 0.94864 1.02126 0.91911 0.86146 0.80638 0.79630 0.79614 1.18851 1.19870 1.18136 1.19951 0.98537 0.91174 1.36317 0.89391 1.17867 0.90225 0.92226 0.86879 1.20680 1.04824 0.92439 1.07889 1.20340 0.92463 0.97421 0.93320 1.18161 1.04830 0.89088 1.15750 1.21679 0.76670 0.90414 0.74417 1.90690 1.66037 1.31999 1.56000 1.86710 1.43969 1.32093 1.63110 1.23029 0.94928 0.87441 0.99926 1.22156 0.83498 0.88266 0.79096 1.90597 1.65238 1.24391 1.48922 1.20423 0.99394 0.94405 1.03045 1.21420 0.97981 0.90665 0.96210 1.21142 0.95923 1.01163 1.00065 1.18073 0.91181 0.84239 0.95653 1.91534 1.75731 1.57006 1.87009 1.21150 1.02769 0.90717 1.03764 1.21298 0.91436 0.99895 0.92145 1.20694 0.97082 0.91893 0.96331 1.21002 1.00165 0.97090 1.02114 0.89926 0.88012 0.87903 0.88150 0.88141 0.83629 0.83797 0.83873 0.83497 0.87793 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.13 10.99 55.56 0.61 -17.52 16 2 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 3 Si 0.92 16.94 29.60 -169.99 -5.03 11.91 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 7 C -0.43 -10.54 9.04 -37.75 -0.34 -10.88 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.32 5.57 -106.80 -0.59 2.72 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.04 16 11 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 12 C -0.28 -6.46 5.89 -104.74 -0.62 -7.08 16 13 C 0.52 11.15 7.89 34.51 0.27 11.42 16 14 O -0.55 -12.23 16.11 -19.26 -0.31 -12.54 16 15 O -0.34 -6.61 8.98 -47.39 -0.43 -7.03 16 16 C 0.02 0.31 4.56 36.01 0.16 0.47 16 17 C 0.40 5.16 7.19 -30.76 -0.22 4.94 16 18 O -0.42 -6.97 16.49 -14.11 -0.23 -7.20 16 19 C -0.17 -1.69 5.87 -105.06 -0.62 -2.31 16 20 C -0.04 -0.34 9.47 -39.12 -0.37 -0.71 16 21 C -0.16 -1.18 10.01 -39.58 -0.40 -1.57 16 22 C 0.13 1.03 7.31 -39.23 -0.29 0.74 16 23 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 24 C -0.17 -1.26 10.01 -39.58 -0.40 -1.66 16 25 C -0.03 -0.26 9.59 -39.12 -0.38 -0.64 16 26 C -0.04 -0.98 9.55 -39.60 -0.38 -1.35 16 27 C -0.18 -4.62 8.63 -39.27 -0.34 -4.96 16 28 H 0.29 6.17 8.29 -40.82 -0.34 5.84 16 29 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 31 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 33 H 0.15 0.86 7.05 -52.49 -0.37 0.49 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.26 7.65 -52.48 -0.40 0.86 16 37 H 0.10 2.33 7.59 -52.48 -0.40 1.94 16 38 H 0.12 3.06 6.20 -52.49 -0.33 2.74 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -29.33 348.36 -9.00 -38.32 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.55 Total: 6.04 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -5.34 Total: -16.11 kcal Atomic # 7 Polarization: -18.13 SS G_CDS: 0.61 Total: -17.52 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.97 Total: -26.78 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.33 -9.00 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758689557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.823 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds