Wall clock time and date at job start Tue Mar 31 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47254 * 274.53182 * 3 2 1 5 5 H 1.48503 * 109.46722 * 34.53457 * 3 2 1 6 6 H 1.48495 * 109.46738 * 154.53049 * 3 2 1 7 7 C 1.40242 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00171 * 198.01032 * 7 2 1 9 9 C 1.41091 * 120.00249 * 18.01443 * 7 2 1 10 10 C 1.40892 * 120.10014 * 205.06920 * 9 7 2 11 11 C 1.36304 * 119.90050 * 180.02562 * 10 9 7 12 12 C 1.40063 * 120.09734 * 0.02562 * 11 10 9 13 13 C 1.47520 * 119.89707 * 179.97438 * 12 11 10 14 14 O 1.21497 * 119.99928 * 359.97438 * 13 12 11 15 15 O 1.34779 * 119.99642 * 180.02562 * 13 12 11 16 16 C 1.45194 * 116.99640 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47271 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99601 * 359.97438 * 17 16 15 19 19 C 1.47008 * 120.00546 * 180.02562 * 17 16 15 20 20 C 1.39951 * 120.14249 * 359.71876 * 19 17 16 21 21 C 1.37749 * 119.85013 * 179.74531 * 20 19 17 22 22 C 1.38716 * 120.14521 * 0.53785 * 21 20 19 23 23 F 1.35103 * 119.85218 * 179.69416 * 22 21 20 24 24 C 1.38720 * 120.29592 * 359.71731 * 22 21 20 25 25 C 1.37743 * 120.14488 * 0.02562 * 24 22 21 26 26 C 1.40065 * 120.20196 * 0.24937 * 12 11 10 27 27 C 1.36297 * 120.09939 * 359.48603 * 26 12 11 28 28 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05316 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.94896 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47448 * 299.99690 * 16 15 13 32 32 H 1.09003 * 109.47315 * 59.99646 * 16 15 13 33 33 H 1.08001 * 120.07054 * 0.02562 * 20 19 17 34 34 H 1.07992 * 119.92417 * 180.25339 * 21 20 19 35 35 H 1.07999 * 119.92879 * 179.97438 * 24 22 21 36 36 H 1.08003 * 120.07331 * 179.97438 * 25 24 22 37 37 H 1.08007 * 119.95003 * 179.74927 * 26 12 11 38 38 H 1.08002 * 120.05175 * 180.23308 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3921 2.1018 -1.3957 5 1 1.4890 2.6231 0.7937 6 1 3.5825 1.4143 0.6021 7 6 2.0076 -1.2145 -0.0005 8 1 3.0479 -1.2376 0.2886 9 6 1.3540 -2.4063 -0.3789 10 6 1.8211 -3.6489 0.0932 11 6 1.1870 -4.7978 -0.2754 12 6 0.0729 -4.7443 -1.1226 13 6 -0.6098 -5.9905 -1.5191 14 8 -0.2051 -7.0611 -1.1113 15 8 -1.6817 -5.9415 -2.3346 16 6 -2.3028 -7.2066 -2.6835 17 6 -3.4767 -6.9556 -3.5947 18 8 -3.7619 -5.8219 -3.9177 19 6 -4.2767 -8.0846 -4.0910 20 6 -3.9473 -9.3944 -3.7241 21 6 -4.7042 -10.4475 -4.1884 22 6 -5.7840 -10.2128 -5.0269 23 9 -6.5186 -11.2505 -5.4839 24 6 -6.1127 -8.9174 -5.3988 25 6 -5.3673 -7.8550 -4.9373 26 6 -0.3915 -3.5118 -1.5990 27 6 0.2331 -2.3576 -1.2313 28 1 -0.4850 0.8401 0.0004 29 1 2.6809 -3.6912 0.7454 30 1 1.5446 -5.7507 0.0857 31 1 -1.5763 -7.8399 -3.1926 32 1 -2.6469 -7.7047 -1.7771 33 1 -3.1043 -9.5787 -3.0746 34 1 -4.4535 -11.4583 -3.9027 35 1 -6.9544 -8.7416 -6.0523 36 1 -5.6240 -6.8470 -5.2279 37 1 -1.2486 -3.4757 -2.2553 38 1 -0.1280 -1.4073 -1.5961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758689557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:22 Heat of formation + Delta-G solvation = -139.182575 kcal Electronic energy + Delta-G solvation = -25169.725247 eV Core-core repulsion = 21048.843394 eV Total energy + Delta-G solvation = -4120.881853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.06639 -41.61886 -40.81346 -39.34105 -39.01853 -37.19116 -35.75249 -32.91415 -32.22979 -32.10687 -31.38484 -29.73189 -27.81469 -24.97777 -24.22122 -23.72982 -22.83563 -21.72306 -21.21820 -19.40515 -19.05967 -18.60208 -18.18347 -17.60502 -17.46842 -17.37573 -17.02385 -16.73089 -15.98464 -15.80960 -15.75227 -15.54519 -15.17361 -14.76046 -14.65523 -14.25424 -14.11360 -14.07420 -13.97161 -13.84178 -13.47736 -13.28475 -13.22032 -12.89257 -12.66702 -12.40751 -12.11973 -11.81927 -11.80054 -11.44004 -11.37121 -11.15684 -10.94120 -10.27490 -9.92556 -9.64025 -9.53923 -8.85697 -6.55783 -0.65762 0.13703 0.22097 1.09266 1.13261 1.35980 1.41225 1.54978 1.58662 1.86755 2.14598 2.50238 2.67050 2.82458 3.07123 3.54715 3.61690 3.76358 3.89638 4.03946 4.06450 4.13165 4.16131 4.27419 4.37079 4.42302 4.72939 4.83519 4.92440 4.96367 4.97764 5.01802 5.11040 5.13487 5.21595 5.32761 5.55531 5.67192 5.79850 5.89502 5.96017 6.14242 6.27407 6.48784 6.69496 6.81359 6.96834 8.09303 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.029022 B = 0.002011 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.547878 B =13921.394053 C =14800.505793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.457 4.457 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.248 4.248 11 C -0.019 4.019 12 C -0.292 4.292 13 C 0.523 3.477 14 O -0.558 6.558 15 O -0.356 6.356 16 C 0.010 3.990 17 C 0.405 3.595 18 O -0.467 6.467 19 C -0.187 4.187 20 C -0.036 4.036 21 C -0.160 4.160 22 C 0.125 3.875 23 F -0.137 7.137 24 C -0.163 4.163 25 C -0.036 4.036 26 C -0.042 4.042 27 C -0.204 4.204 28 H 0.299 0.701 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -14.276 -8.087 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.483 4.483 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.267 4.267 11 C -0.038 4.038 12 C -0.294 4.294 13 C 0.375 3.625 14 O -0.453 6.453 15 O -0.273 6.273 16 C -0.064 4.064 17 C 0.283 3.717 18 O -0.343 6.343 19 C -0.188 4.188 20 C -0.054 4.054 21 C -0.178 4.178 22 C 0.105 3.895 23 F -0.115 7.115 24 C -0.182 4.182 25 C -0.054 4.054 26 C -0.060 4.060 27 C -0.223 4.223 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.823 -13.892 -8.160 18.870 hybrid contribution -0.059 0.388 -0.012 0.393 sum -9.883 -13.504 -8.172 18.623 Atomic orbital electron populations 1.69782 1.09554 1.32002 1.30130 1.27084 0.95536 1.05309 0.90756 0.85022 0.79290 0.74826 0.79708 1.18483 1.18966 1.17470 1.20265 0.99058 0.91918 1.37083 0.88653 1.18211 0.90747 0.93427 0.87517 1.20883 1.05451 0.92203 1.08202 1.20528 0.92303 0.97894 0.93066 1.18434 1.05265 0.89920 1.15824 1.21269 0.77088 0.89552 0.74569 1.90669 1.66435 1.31914 1.56329 1.86654 1.43136 1.35275 1.62243 1.23549 0.95661 0.85675 1.01498 1.22405 0.82898 0.88501 0.77854 1.90590 1.66552 1.26235 1.50935 1.20217 0.99897 0.94102 1.04558 1.21618 0.98363 0.89617 0.95840 1.21408 0.95084 1.02179 0.99135 1.18275 0.91337 0.84218 0.95621 1.91534 1.75849 1.57096 1.87049 1.21301 1.02977 0.90255 1.03642 1.21343 0.91527 1.00280 0.92249 1.20761 0.97067 0.91959 0.96259 1.20985 1.01107 0.97035 1.03182 0.88945 0.86506 0.86401 0.85762 0.85912 0.81562 0.81328 0.82034 0.83854 0.87310 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.22 10.99 21.87 0.24 -37.98 16 2 C 0.03 1.53 5.13 85.36 0.44 1.97 16 3 Si 0.99 34.14 29.60 68.60 2.03 36.17 16 4 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 7 C -0.46 -22.50 9.04 23.46 0.21 -22.28 16 8 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.10 5.39 5.57 -21.28 -0.12 5.27 16 10 C -0.25 -11.85 9.73 22.47 0.22 -11.63 16 11 C -0.02 -0.90 9.52 22.26 0.21 -0.69 16 12 C -0.29 -13.79 5.89 -19.94 -0.12 -13.91 16 13 C 0.52 22.37 7.89 70.27 0.55 22.92 16 14 O -0.56 -23.92 16.11 19.84 0.32 -23.60 16 15 O -0.36 -13.69 8.98 -50.51 -0.45 -14.14 16 16 C 0.01 0.27 4.56 71.24 0.33 0.59 16 17 C 0.41 10.42 7.19 27.99 0.20 10.62 16 18 O -0.47 -15.96 16.49 15.77 0.26 -15.70 16 19 C -0.19 -3.45 5.87 -20.15 -0.12 -3.57 16 20 C -0.04 -0.47 9.47 22.57 0.21 -0.25 16 21 C -0.16 -1.81 10.01 22.27 0.22 -1.58 16 22 C 0.12 1.71 7.31 22.50 0.16 1.88 16 23 F -0.14 -2.05 17.26 44.97 0.78 -1.27 16 24 C -0.16 -2.21 10.01 22.27 0.22 -1.99 16 25 C -0.04 -0.61 9.59 22.57 0.22 -0.39 16 26 C -0.04 -2.03 9.55 22.26 0.21 -1.82 16 27 C -0.20 -10.55 8.63 22.47 0.19 -10.35 16 28 H 0.30 12.83 8.29 -92.70 -0.77 12.06 16 29 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 30 H 0.12 5.01 7.63 -2.91 -0.02 4.98 16 31 H 0.12 2.70 8.07 -2.39 -0.02 2.68 16 32 H 0.12 2.71 8.09 -2.39 -0.02 2.69 16 33 H 0.17 1.38 7.05 -2.91 -0.02 1.36 16 34 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.14 2.49 7.65 -2.91 -0.02 2.47 16 37 H 0.11 5.06 7.59 -2.91 -0.02 5.04 16 38 H 0.11 5.81 6.20 -2.91 -0.02 5.79 16 Total: -1.00 -63.92 348.36 7.54 -56.38 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 1.11 Total: 25.34 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.25 Total: -25.21 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.24 Total: -37.98 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: 0.13 Total: -53.43 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Total: -63.92 7.54 -56.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758689557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.805 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds