Wall clock time and date at job start Tue Mar 31 2020 15:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99956 * 2 1 4 4 C 1.50702 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.29387 * 124.70886 * 90.00201 * 4 3 2 6 6 C 1.30911 * 117.46958 * 179.97438 * 5 4 3 7 7 C 1.50704 * 123.03373 * 180.02562 * 6 5 4 8 8 C 1.36757 * 113.93043 * 359.97438 * 6 5 4 9 9 C 1.46506 * 126.17599 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00251 * 359.72014 * 9 8 6 11 11 O 1.34879 * 119.99741 * 180.02562 * 9 8 6 12 12 C 1.45198 * 116.99647 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46862 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00119 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00192 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00289 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47439 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99951 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00266 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47423 * 60.00174 * 21 19 17 23 23 H 1.48507 * 109.47199 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47276 * 300.00233 * 21 19 17 25 25 S 1.70932 * 124.70412 * 270.28713 * 4 3 2 26 26 H 1.08998 * 109.47150 * 299.99353 * 1 2 3 27 27 H 1.09000 * 109.47001 * 60.00089 * 1 2 3 28 28 H 1.09008 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46960 * 60.00075 * 3 2 1 30 30 H 1.09001 * 109.47400 * 300.00272 * 3 2 1 31 31 H 1.08995 * 109.47069 * 269.99426 * 7 6 5 32 32 H 1.09004 * 109.47127 * 29.99810 * 7 6 5 33 33 H 1.09004 * 109.47009 * 150.00060 * 7 6 5 34 34 H 1.08997 * 109.47571 * 299.99702 * 12 11 9 35 35 H 1.08998 * 109.47370 * 59.99944 * 12 11 9 36 36 H 0.97006 * 119.99876 * 359.97438 * 15 13 12 37 37 H 1.09007 * 109.47259 * 299.99515 * 16 15 13 38 38 H 1.09000 * 109.47842 * 59.99884 * 16 15 13 39 39 H 0.96996 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2465 1.1285 -1.0646 6 6 5.5412 1.0265 -0.9002 7 6 6.5120 0.9504 -2.0504 8 6 5.9334 0.9962 0.4096 9 6 7.3105 0.8873 0.8977 10 8 8.2314 0.8086 0.1074 11 8 7.5564 0.8681 2.2238 12 6 8.9445 0.7577 2.6352 13 6 9.0234 0.7525 4.1401 14 8 8.0096 0.8334 4.8008 15 7 10.2206 0.6580 4.7519 16 6 10.2974 0.6524 6.2148 17 6 11.7380 0.5380 6.6419 18 1 12.5185 0.4761 5.8979 19 6 12.0598 0.5134 7.9823 20 7 11.1096 0.5893 8.8882 21 14 13.8457 0.3722 8.5116 22 1 14.6125 1.5274 7.9798 23 1 13.9235 0.3664 9.9947 24 1 14.4209 -0.8899 7.9813 25 16 4.4827 1.1023 1.4042 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 6.6654 -0.0924 -2.3280 32 1 6.1092 1.4979 -2.9026 33 1 7.4636 1.3908 -1.7525 34 1 9.3664 -0.1688 2.2457 35 1 9.5076 1.6055 2.2451 36 1 11.0315 0.5930 4.2234 37 1 9.8751 1.5788 6.6043 38 1 9.7347 -0.1957 6.6050 39 1 11.3359 0.5716 9.8312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758823342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:37 Heat of formation + Delta-G solvation = -119.914972 kcal Electronic energy + Delta-G solvation = -24110.441830 eV Core-core repulsion = 20145.759396 eV Total energy + Delta-G solvation = -3964.682434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87998 -40.02461 -38.72780 -38.25279 -36.43567 -34.28421 -32.83872 -32.43737 -29.88477 -29.23623 -28.46426 -26.63759 -26.49318 -23.33022 -23.03817 -22.27111 -20.04789 -19.78890 -18.66841 -17.65642 -17.21215 -17.12217 -16.74600 -16.61855 -16.12273 -15.71254 -15.40801 -15.19656 -15.05248 -14.44286 -14.35397 -14.13096 -13.35488 -13.17515 -13.03686 -12.88033 -12.80884 -12.66592 -12.56678 -12.01323 -11.92625 -11.81368 -11.63158 -11.05227 -10.93247 -10.80640 -10.77359 -10.36523 -10.32642 -10.09648 -9.88588 -9.47804 -9.23053 -9.15696 -8.80097 -8.02261 -6.21273 -4.28945 -0.29514 0.79830 1.27119 1.87299 2.23913 2.58665 3.12980 3.15288 3.23143 3.28141 3.29489 3.76257 3.92657 4.31160 4.33014 4.52748 4.66374 4.72968 4.80449 4.86588 4.91698 5.09037 5.14477 5.17861 5.21703 5.29048 5.37128 5.42327 5.54795 5.90891 6.19683 6.48124 7.19207 7.21057 7.26446 7.43163 7.45898 7.59165 7.89821 8.46185 8.68039 8.92503 9.37421 10.88775 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002085 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.544942 B =13423.618507 C =14522.109427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.137 3.863 4 C 0.039 3.961 5 N -0.463 5.463 6 C 0.161 3.839 7 C -0.091 4.091 8 C -0.296 4.296 9 C 0.548 3.452 10 O -0.492 6.492 11 O -0.325 6.325 12 C 0.051 3.949 13 C 0.500 3.500 14 O -0.533 6.533 15 N -0.705 5.705 16 C 0.252 3.748 17 C -0.547 4.547 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 S 0.269 5.731 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.366 1.871 -20.971 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.234 4.234 5 N -0.179 5.179 6 C 0.019 3.981 7 C -0.150 4.150 8 C -0.419 4.419 9 C 0.391 3.609 10 O -0.383 6.383 11 O -0.240 6.240 12 C -0.027 4.027 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.585 4.585 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 S 0.529 5.471 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.296 1.773 -19.784 27.005 hybrid contribution 1.845 0.014 -0.586 1.936 sum -16.451 1.787 -20.370 26.245 Atomic orbital electron populations 1.22835 0.79657 1.03533 1.00470 1.87969 1.20591 1.25953 1.95560 1.20858 0.84088 0.86394 1.02977 1.27064 1.00973 1.02461 0.92912 1.66035 1.04171 1.16262 1.31481 1.20992 0.89924 0.94109 0.93025 1.20703 0.96904 1.03896 0.93513 1.24799 0.96411 1.23365 0.97315 1.19268 0.87192 0.73339 0.81133 1.90849 1.44802 1.46222 1.56383 1.86640 1.30429 1.83407 1.23529 1.22940 0.79704 1.04781 0.95238 1.19845 0.85142 0.78910 0.87868 1.90713 1.34685 1.49460 1.66203 1.46361 1.06392 1.71935 1.10872 1.19179 0.97476 0.98047 0.72151 1.21169 0.91587 1.53325 0.92408 0.91790 1.24952 0.98136 0.94604 0.96284 1.69957 1.32448 1.48423 1.01329 0.86441 0.83936 0.78763 0.77572 1.20027 1.21038 1.20028 1.84462 0.94177 1.60799 1.07673 0.93447 0.93516 0.88954 0.90286 0.89648 0.89633 0.90251 0.88221 0.88140 0.88157 0.77375 0.95226 0.95227 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.40 10.69 -35.23 -0.38 -3.78 16 3 C 0.14 1.02 6.51 36.01 0.23 1.26 16 4 C 0.04 0.41 7.00 -13.31 -0.09 0.32 16 5 N -0.46 -5.51 10.49 -7.47 -0.08 -5.59 16 6 C 0.16 1.94 6.83 -83.52 -0.57 1.37 16 7 C -0.09 -0.90 9.71 36.01 0.35 -0.55 16 8 C -0.30 -3.86 6.52 -36.79 -0.24 -4.10 16 9 C 0.55 7.94 7.92 34.06 0.27 8.21 16 10 O -0.49 -7.29 14.12 -19.35 -0.27 -7.56 16 11 O -0.33 -5.23 9.65 -47.67 -0.46 -5.69 16 12 C 0.05 0.76 5.96 36.01 0.21 0.97 16 13 C 0.50 9.86 7.91 -10.98 -0.09 9.77 16 14 O -0.53 -12.85 16.50 -14.10 -0.23 -13.08 16 15 N -0.71 -14.35 5.55 -61.48 -0.34 -14.69 16 16 C 0.25 6.51 5.43 -5.20 -0.03 6.48 16 17 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.66 13.29 55.43 0.74 -24.92 16 21 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 S 0.27 3.03 23.04 -107.50 -2.48 0.56 16 26 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.05 6.06 -51.93 -0.31 0.74 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 37 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -34.36 363.57 -7.14 -41.50 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.84 Total: 0.45 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 0.75 Total: 11.82 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.32 Total: -45.21 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.34 Total: -30.12 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.48 Total: 0.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.36 -7.14 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758823342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.419 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds