Wall clock time and date at job start Tue Mar 31 2020 15:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99956 * 2 1 4 4 C 1.50702 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.29387 * 124.70886 * 90.00201 * 4 3 2 6 6 C 1.30911 * 117.46958 * 179.97438 * 5 4 3 7 7 C 1.50704 * 123.03373 * 180.02562 * 6 5 4 8 8 C 1.36757 * 113.93043 * 359.97438 * 6 5 4 9 9 C 1.46506 * 126.17599 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00251 * 359.72014 * 9 8 6 11 11 O 1.34879 * 119.99741 * 180.02562 * 9 8 6 12 12 C 1.45198 * 116.99647 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46862 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00119 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00192 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00289 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47439 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99951 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00266 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47423 * 60.00174 * 21 19 17 23 23 H 1.48507 * 109.47199 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47276 * 300.00233 * 21 19 17 25 25 S 1.70932 * 124.70412 * 270.28713 * 4 3 2 26 26 H 1.08998 * 109.47150 * 299.99353 * 1 2 3 27 27 H 1.09000 * 109.47001 * 60.00089 * 1 2 3 28 28 H 1.09008 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46960 * 60.00075 * 3 2 1 30 30 H 1.09001 * 109.47400 * 300.00272 * 3 2 1 31 31 H 1.08995 * 109.47069 * 269.99426 * 7 6 5 32 32 H 1.09004 * 109.47127 * 29.99810 * 7 6 5 33 33 H 1.09004 * 109.47009 * 150.00060 * 7 6 5 34 34 H 1.08997 * 109.47571 * 299.99702 * 12 11 9 35 35 H 1.08998 * 109.47370 * 59.99944 * 12 11 9 36 36 H 0.97006 * 119.99876 * 359.97438 * 15 13 12 37 37 H 1.09007 * 109.47259 * 299.99515 * 16 15 13 38 38 H 1.09000 * 109.47842 * 59.99884 * 16 15 13 39 39 H 0.96996 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2465 1.1285 -1.0646 6 6 5.5412 1.0265 -0.9002 7 6 6.5120 0.9504 -2.0504 8 6 5.9334 0.9962 0.4096 9 6 7.3105 0.8873 0.8977 10 8 8.2314 0.8086 0.1074 11 8 7.5564 0.8681 2.2238 12 6 8.9445 0.7577 2.6352 13 6 9.0234 0.7525 4.1401 14 8 8.0096 0.8334 4.8008 15 7 10.2206 0.6580 4.7519 16 6 10.2974 0.6524 6.2148 17 6 11.7380 0.5380 6.6419 18 1 12.5185 0.4761 5.8979 19 6 12.0598 0.5134 7.9823 20 7 11.1096 0.5893 8.8882 21 14 13.8457 0.3722 8.5116 22 1 14.6125 1.5274 7.9798 23 1 13.9235 0.3664 9.9947 24 1 14.4209 -0.8899 7.9813 25 16 4.4827 1.1023 1.4042 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 6.6654 -0.0924 -2.3280 32 1 6.1092 1.4979 -2.9026 33 1 7.4636 1.3908 -1.7525 34 1 9.3664 -0.1688 2.2457 35 1 9.5076 1.6055 2.2451 36 1 11.0315 0.5930 4.2234 37 1 9.8751 1.5788 6.6043 38 1 9.7347 -0.1957 6.6050 39 1 11.3359 0.5716 9.8312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758823342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:37 Heat of formation + Delta-G solvation = -144.929277 kcal Electronic energy + Delta-G solvation = -24111.526532 eV Core-core repulsion = 20145.759396 eV Total energy + Delta-G solvation = -3965.767136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94410 -41.06708 -40.28557 -38.85520 -37.62778 -36.19549 -34.42619 -33.65650 -31.18564 -29.87290 -29.77072 -28.28292 -27.00203 -24.82725 -23.98889 -23.62242 -21.68083 -20.85931 -19.62681 -19.19122 -18.27223 -18.00331 -17.96945 -17.62406 -17.22235 -16.99927 -16.68564 -16.38598 -16.34040 -15.84101 -15.69706 -15.00593 -14.73584 -14.48210 -14.15759 -14.00394 -13.82335 -13.69918 -13.57986 -13.40007 -13.29911 -12.96174 -12.68453 -12.50496 -12.37980 -12.24320 -12.00711 -11.83694 -11.52628 -11.05163 -10.92993 -10.83000 -10.80804 -10.74615 -10.02968 -9.94141 -8.29472 -6.46159 -1.19420 -0.06938 0.39276 0.92081 1.06590 1.44736 1.47948 1.52646 1.56374 1.60994 2.31762 2.47066 2.56012 3.05679 3.12487 3.50390 3.63122 3.68187 3.83551 4.02633 4.03137 4.13235 4.28977 4.52136 4.55754 4.59194 4.66436 4.78534 4.89697 4.93053 5.08168 5.21626 5.26806 5.40868 5.62219 5.81809 6.01089 6.32238 6.35158 6.62351 6.76169 7.19856 7.34613 8.82333 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002085 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.544942 B =13423.618507 C =14522.109427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.132 3.868 4 C 0.055 3.945 5 N -0.479 5.479 6 C 0.165 3.835 7 C -0.090 4.090 8 C -0.326 4.326 9 C 0.551 3.449 10 O -0.499 6.499 11 O -0.345 6.345 12 C 0.062 3.938 13 C 0.500 3.500 14 O -0.583 6.583 15 N -0.697 5.697 16 C 0.267 3.733 17 C -0.558 4.558 18 H 0.087 0.913 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.262 1.262 25 S 0.261 5.739 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.413 0.587 37 H -0.007 1.007 38 H -0.008 1.008 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 1.965 -22.865 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.053 3.947 4 C -0.219 4.219 5 N -0.196 5.196 6 C 0.024 3.976 7 C -0.148 4.148 8 C -0.448 4.448 9 C 0.395 3.605 10 O -0.389 6.389 11 O -0.261 6.261 12 C -0.015 4.015 13 C 0.285 3.715 14 O -0.463 6.463 15 N -0.349 5.349 16 C 0.145 3.855 17 C -0.596 4.596 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.808 3.192 22 H -0.187 1.187 23 H -0.212 1.212 24 H -0.187 1.187 25 S 0.521 5.479 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.632 1.865 -21.736 28.050 hybrid contribution 1.472 -0.012 -0.059 1.473 sum -16.160 1.853 -21.794 27.195 Atomic orbital electron populations 1.23036 0.77762 1.04377 1.01839 1.87916 1.22691 1.26628 1.95859 1.21125 0.82025 0.86487 1.05074 1.27672 1.02289 0.99853 0.92057 1.66142 1.04147 1.17427 1.31890 1.21362 0.90416 0.92609 0.93243 1.20758 0.96157 1.04569 0.93343 1.24780 0.96197 1.25824 0.98021 1.19368 0.87768 0.72986 0.80331 1.90835 1.45121 1.46793 1.56169 1.86621 1.30863 1.83886 1.24747 1.22851 0.80092 1.07584 0.90945 1.20639 0.83861 0.76922 0.90055 1.90691 1.36304 1.51357 1.67962 1.46025 1.07904 1.72042 1.08914 1.18626 0.97010 0.94632 0.75270 1.21587 0.92008 1.52781 0.93221 0.89540 1.26053 1.03210 0.93905 0.96389 1.70121 1.35227 1.49654 1.01780 0.85202 0.77657 0.79472 0.76855 1.18661 1.21197 1.18706 1.84472 0.94014 1.61174 1.08226 0.92021 0.92181 0.88477 0.87716 0.87969 0.88814 0.88604 0.88861 0.85254 0.85133 0.75027 0.98913 0.98970 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.71 10.69 -148.98 -1.59 -8.30 16 3 C 0.13 1.74 6.51 71.24 0.46 2.20 16 4 C 0.05 1.08 7.00 88.47 0.62 1.70 16 5 N -0.48 -10.84 10.49 -177.55 -1.86 -12.70 16 6 C 0.17 3.84 6.83 42.35 0.29 4.13 16 7 C -0.09 -1.65 9.71 71.24 0.69 -0.96 16 8 C -0.33 -8.36 6.52 24.08 0.16 -8.20 16 9 C 0.55 15.59 7.92 69.98 0.55 16.15 16 10 O -0.50 -14.07 14.12 19.48 0.28 -13.80 16 11 O -0.35 -10.96 9.65 -51.54 -0.50 -11.45 16 12 C 0.06 1.76 5.96 71.24 0.42 2.18 16 13 C 0.50 19.81 7.91 87.66 0.69 20.51 16 14 O -0.58 -29.10 16.50 15.77 0.26 -28.84 16 15 N -0.70 -28.39 5.55 -466.80 -2.59 -30.98 16 16 C 0.27 14.30 5.43 85.63 0.46 14.77 16 17 C -0.56 -29.64 9.28 25.60 0.24 -29.40 16 18 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.24 5.46 84.66 0.46 0.70 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 21 Si 0.99 41.63 29.54 68.60 2.03 43.66 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 S 0.26 5.82 23.04 -56.49 -1.30 4.52 16 26 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 1.86 6.06 -2.38 -0.01 1.85 16 34 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.41 13.40 8.32 -92.70 -0.77 12.63 16 37 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -76.49 363.57 1.64 -74.85 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.33 Total: 12.81 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 6.31 Total: 25.22 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -4.17 Total: -98.67 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.55 Total: -62.40 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.30 Total: 4.52 kcal Total: -76.49 1.64 -74.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758823342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.079 kcal (2) G-P(sol) polarization free energy of solvation -76.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds