Wall clock time and date at job start Tue Mar 31 2020 15:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48506 * 109.46887 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.47322 * 29.99924 * 3 2 1 6 6 H 1.48503 * 109.47117 * 150.00218 * 3 2 1 7 7 C 1.37874 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00350 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47417 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99594 * 85.00087 * 10 9 7 12 12 C 1.52997 * 109.47212 * 85.00153 * 11 10 9 13 13 C 1.52998 * 117.50310 * 243.74638 * 12 11 10 14 14 C 1.52996 * 117.50163 * 175.08612 * 12 11 10 15 15 S 1.65591 * 120.00456 * 265.00195 * 10 9 7 16 16 O 1.42104 * 106.40084 * 23.54037 * 15 10 9 17 17 O 1.42103 * 106.40538 * 156.45682 * 15 10 9 18 18 C 1.76204 * 107.21896 * 270.00073 * 15 10 9 19 19 C 1.35480 * 126.07964 * 90.02390 * 18 15 10 20 20 N 1.34956 * 108.98528 * 180.02562 * 19 18 15 21 21 H 0.97007 * 125.63408 * 179.97438 * 20 19 18 22 22 C 1.37699 * 108.72974 * 359.97438 * 20 19 18 23 23 C 1.46491 * 126.26210 * 180.02562 * 22 20 19 24 24 O 1.21624 * 119.99999 * 179.97438 * 23 22 20 25 25 O 1.34888 * 119.99975 * 359.97094 * 23 22 20 26 26 C 1.37998 * 107.47194 * 359.73355 * 22 20 19 27 27 H 0.96998 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99918 * 9 7 2 29 29 H 1.09001 * 109.47209 * 300.00211 * 9 7 2 30 30 H 1.09002 * 109.47068 * 205.00213 * 11 10 9 31 31 H 1.09001 * 109.47372 * 325.00300 * 11 10 9 32 32 H 1.09008 * 115.55245 * 29.41332 * 12 11 10 33 33 H 1.09000 * 117.49561 * 359.97438 * 13 12 11 34 34 H 1.09000 * 117.50593 * 145.01245 * 13 12 11 35 35 H 1.09004 * 117.49898 * 214.97822 * 14 12 11 36 36 H 1.09002 * 117.49721 * 359.97438 * 14 12 11 37 37 H 1.08007 * 125.50870 * 359.97438 * 19 18 15 38 38 H 0.96699 * 117.00086 * 180.02562 * 25 23 22 39 39 H 1.07995 * 126.51537 * 180.25363 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.7640 -4.0981 1.2616 12 6 1.8048 -5.1111 1.8897 13 6 1.1773 -4.7485 3.2371 14 6 2.2643 -5.8235 3.1633 15 16 2.6451 -4.3226 -1.4310 16 8 2.4193 -3.3546 -2.4465 17 8 3.9096 -4.9296 -1.2033 18 6 1.5100 -5.6358 -1.7340 19 6 0.3434 -5.5405 -2.4163 20 7 -0.2514 -6.7517 -2.4402 21 1 -1.0990 -6.9568 -2.8650 22 6 0.5438 -7.6483 -1.7620 23 6 0.2635 -9.0712 -1.5551 24 8 1.0495 -9.7620 -0.9353 25 8 -0.8665 -9.6151 -2.0518 26 6 1.6563 -6.9626 -1.3187 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.7250 -4.5765 1.0724 31 1 2.9039 -3.2591 1.9433 32 1 1.1950 -5.6794 1.1872 33 1 1.4481 -3.7884 3.6763 34 1 0.1548 -5.0783 3.4213 35 1 1.9566 -6.8604 3.2989 36 1 3.2503 -5.5709 3.5535 37 1 -0.0478 -4.6406 -2.8674 38 1 -1.0082 -10.5578 -1.8894 39 1 2.4814 -7.3723 -0.7551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761289671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:08 Heat of formation + Delta-G solvation = -92.109696 kcal Electronic energy + Delta-G solvation = -26433.405990 eV Core-core repulsion = 22469.929283 eV Total energy + Delta-G solvation = -3963.476707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62848 -39.84458 -37.54675 -36.48931 -36.38579 -35.10704 -34.72591 -32.34423 -31.58998 -29.97242 -27.83426 -25.33451 -24.35089 -22.43334 -22.05755 -21.99789 -20.59725 -20.28843 -19.51953 -17.99976 -17.86067 -16.68943 -16.45559 -16.07536 -15.93795 -15.66302 -15.43835 -14.69693 -14.41793 -14.32209 -14.07915 -13.74385 -13.63029 -13.18615 -12.71846 -12.51053 -12.42678 -11.92831 -11.78657 -11.42783 -11.37837 -11.25836 -11.14138 -11.08534 -11.04088 -10.78495 -10.76760 -10.53517 -10.15376 -10.02543 -9.69378 -9.63297 -9.45494 -8.75957 -8.42345 -8.04363 -6.05084 -4.08166 0.96074 1.11741 1.96601 2.53195 2.80260 2.96691 3.34230 3.40179 3.43839 3.79405 4.15829 4.43748 4.50924 4.63353 4.84242 4.94224 5.04931 5.25278 5.25907 5.31750 5.37996 5.41347 5.69386 5.75711 5.87863 5.92131 6.08022 6.17500 6.22302 6.22870 6.40223 6.42065 6.57128 6.66464 7.02963 7.27143 7.43452 7.55292 7.63976 7.93183 8.22811 8.94506 9.56913 11.03459 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.004227 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.240826 B = 6623.202351 C = 7294.956191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.258 3.742 10 N -0.977 5.977 11 C 0.152 3.848 12 C -0.168 4.168 13 C -0.174 4.174 14 C -0.183 4.183 15 S 2.710 3.290 16 O -0.947 6.947 17 O -0.975 6.975 18 C -0.757 4.757 19 C 0.166 3.834 20 N -0.519 5.519 21 H 0.428 0.572 22 C -0.066 4.066 23 C 0.558 3.442 24 O -0.504 6.504 25 O -0.522 6.522 26 C 0.003 3.997 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.197 0.803 38 H 0.417 0.583 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -15.927 -1.137 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.136 3.864 10 N -0.816 5.816 11 C 0.025 3.975 12 C -0.188 4.188 13 C -0.211 4.211 14 C -0.220 4.220 15 S 2.796 3.204 16 O -0.937 6.937 17 O -0.965 6.965 18 C -0.846 4.846 19 C 0.021 3.979 20 N -0.113 5.113 21 H 0.266 0.734 22 C -0.174 4.174 23 C 0.402 3.598 24 O -0.392 6.392 25 O -0.335 6.335 26 C -0.022 4.022 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.214 0.786 38 H 0.277 0.723 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.836 -15.498 -1.626 15.839 hybrid contribution -0.966 -0.256 0.049 1.000 sum -3.801 -15.754 -1.577 16.282 Atomic orbital electron populations 1.69917 1.05960 1.26977 1.50779 1.24897 0.94851 0.99144 0.94991 0.86552 0.79821 0.83077 0.78321 1.20444 1.21290 1.19783 1.21506 0.93703 0.90607 1.50698 0.92046 1.19061 0.87045 0.81867 0.98420 1.57388 1.59980 1.44745 1.19465 1.20813 0.94387 0.96128 0.86132 1.22935 1.02980 1.01828 0.91043 1.22978 0.97456 0.99812 1.00817 1.22929 0.99578 0.97267 1.02260 1.01476 0.73206 0.72331 0.73391 1.93593 1.85867 1.57804 1.56437 1.93493 1.38388 1.78809 1.85844 1.31802 1.17249 1.16050 1.19513 1.22007 0.91528 0.88835 0.95527 1.42139 1.19773 1.08149 1.41237 0.73354 1.19326 0.97545 0.87897 1.12679 1.19383 0.78507 0.86319 0.75565 1.90981 1.47657 1.61525 1.39036 1.84562 1.42166 1.32699 1.74091 1.21022 0.95333 0.90286 0.95600 0.92798 0.94540 0.94358 0.89705 0.89307 0.88056 0.88415 0.89502 0.89312 0.88739 0.78589 0.72344 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.12 9.38 -34.44 -0.32 -14.45 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.26 6.08 5.10 -5.20 -0.03 6.05 16 10 N -0.98 -19.31 2.77 -115.66 -0.32 -19.63 16 11 C 0.15 2.61 5.96 -4.04 -0.02 2.59 16 12 C -0.17 -2.51 6.01 -90.62 -0.54 -3.05 16 13 C -0.17 -2.40 10.18 -26.70 -0.27 -2.68 16 14 C -0.18 -2.30 10.25 -26.70 -0.27 -2.58 16 15 S 2.71 51.81 5.79 -107.50 -0.62 51.19 16 16 O -0.95 -21.11 16.82 -57.17 -0.96 -22.07 16 17 O -0.98 -19.78 16.42 -57.17 -0.94 -20.72 16 18 C -0.76 -11.59 6.18 -39.98 -0.25 -11.84 16 19 C 0.17 2.09 11.61 -17.16 -0.20 1.89 16 20 N -0.52 -5.37 6.07 -9.53 -0.06 -5.43 16 21 H 0.43 2.93 8.96 -40.82 -0.37 2.56 16 22 C -0.07 -0.82 7.10 -81.99 -0.58 -1.40 16 23 C 0.56 6.45 8.30 34.06 0.28 6.73 16 24 O -0.50 -7.20 17.67 -19.36 -0.34 -7.55 16 25 O -0.52 -4.01 13.44 -41.01 -0.55 -4.56 16 26 C 0.00 0.05 10.25 -39.09 -0.40 -0.35 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 0.89 7.61 -51.93 -0.40 0.50 16 29 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.08 1.39 6.91 -51.93 -0.36 1.03 16 31 H 0.09 1.56 7.84 -51.93 -0.41 1.15 16 32 H 0.10 1.52 7.93 -51.92 -0.41 1.11 16 33 H 0.10 1.38 8.03 -51.93 -0.42 0.97 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.20 2.10 8.06 -52.48 -0.42 1.67 16 38 H 0.42 1.32 9.11 45.56 0.42 1.74 16 39 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -35.17 360.10 -9.38 -44.55 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.02 Total: 4.48 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.71 Total: -17.45 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.36 Total: -49.54 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -2.79 Total: -54.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.62 Total: 51.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.17 -9.38 -44.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761289671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.559 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds