Wall clock time and date at job start Tue Mar 31 2020 15:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48506 * 109.46887 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.47322 * 29.99924 * 3 2 1 6 6 H 1.48503 * 109.47117 * 150.00218 * 3 2 1 7 7 C 1.37874 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00350 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47417 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99594 * 85.00087 * 10 9 7 12 12 C 1.52997 * 109.47212 * 85.00153 * 11 10 9 13 13 C 1.52998 * 117.50310 * 243.74638 * 12 11 10 14 14 C 1.52996 * 117.50163 * 175.08612 * 12 11 10 15 15 S 1.65591 * 120.00456 * 265.00195 * 10 9 7 16 16 O 1.42104 * 106.40084 * 23.54037 * 15 10 9 17 17 O 1.42103 * 106.40538 * 156.45682 * 15 10 9 18 18 C 1.76204 * 107.21896 * 270.00073 * 15 10 9 19 19 C 1.35480 * 126.07964 * 90.02390 * 18 15 10 20 20 N 1.34956 * 108.98528 * 180.02562 * 19 18 15 21 21 H 0.97007 * 125.63408 * 179.97438 * 20 19 18 22 22 C 1.37699 * 108.72974 * 359.97438 * 20 19 18 23 23 C 1.46491 * 126.26210 * 180.02562 * 22 20 19 24 24 O 1.21624 * 119.99999 * 179.97438 * 23 22 20 25 25 O 1.34888 * 119.99975 * 359.97094 * 23 22 20 26 26 C 1.37998 * 107.47194 * 359.73355 * 22 20 19 27 27 H 0.96998 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99918 * 9 7 2 29 29 H 1.09001 * 109.47209 * 300.00211 * 9 7 2 30 30 H 1.09002 * 109.47068 * 205.00213 * 11 10 9 31 31 H 1.09001 * 109.47372 * 325.00300 * 11 10 9 32 32 H 1.09008 * 115.55245 * 29.41332 * 12 11 10 33 33 H 1.09000 * 117.49561 * 359.97438 * 13 12 11 34 34 H 1.09000 * 117.50593 * 145.01245 * 13 12 11 35 35 H 1.09004 * 117.49898 * 214.97822 * 14 12 11 36 36 H 1.09002 * 117.49721 * 359.97438 * 14 12 11 37 37 H 1.08007 * 125.50870 * 359.97438 * 19 18 15 38 38 H 0.96699 * 117.00086 * 180.02562 * 25 23 22 39 39 H 1.07995 * 126.51537 * 180.25363 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.7640 -4.0981 1.2616 12 6 1.8048 -5.1111 1.8897 13 6 1.1773 -4.7485 3.2371 14 6 2.2643 -5.8235 3.1633 15 16 2.6451 -4.3226 -1.4310 16 8 2.4193 -3.3546 -2.4465 17 8 3.9096 -4.9296 -1.2033 18 6 1.5100 -5.6358 -1.7340 19 6 0.3434 -5.5405 -2.4163 20 7 -0.2514 -6.7517 -2.4402 21 1 -1.0990 -6.9568 -2.8650 22 6 0.5438 -7.6483 -1.7620 23 6 0.2635 -9.0712 -1.5551 24 8 1.0495 -9.7620 -0.9353 25 8 -0.8665 -9.6151 -2.0518 26 6 1.6563 -6.9626 -1.3187 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.7250 -4.5765 1.0724 31 1 2.9039 -3.2591 1.9433 32 1 1.1950 -5.6794 1.1872 33 1 1.4481 -3.7884 3.6763 34 1 0.1548 -5.0783 3.4213 35 1 1.9566 -6.8604 3.2989 36 1 3.2503 -5.5709 3.5535 37 1 -0.0478 -4.6406 -2.8674 38 1 -1.0082 -10.5578 -1.8894 39 1 2.4814 -7.3723 -0.7551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761289671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:07 Heat of formation + Delta-G solvation = -118.110491 kcal Electronic energy + Delta-G solvation = -26434.533469 eV Core-core repulsion = 22469.929283 eV Total energy + Delta-G solvation = -3964.604186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62807 -40.72708 -38.81573 -38.09522 -37.20006 -36.72914 -36.30241 -34.30554 -32.64696 -30.99143 -29.60986 -26.98479 -25.29673 -24.24039 -23.21236 -23.11139 -21.59210 -21.50733 -20.45099 -19.41951 -18.82475 -18.43583 -18.19601 -17.37836 -16.94914 -16.87523 -16.68995 -16.25276 -16.01786 -15.39737 -15.26720 -14.86035 -14.68107 -14.46688 -14.32161 -13.98973 -13.83756 -13.44146 -13.09855 -13.02556 -12.87273 -12.72665 -12.64909 -12.52102 -12.35864 -12.26475 -12.24729 -12.02238 -11.90217 -11.67720 -11.20389 -10.76214 -10.63765 -10.50099 -9.80487 -9.69159 -8.12743 -6.22427 -0.37244 -0.00114 0.82147 1.44138 1.46690 1.55345 1.65141 1.83906 2.12299 2.34361 2.48350 3.00812 3.04450 3.19147 3.38657 3.86072 3.96216 3.97422 4.07194 4.09779 4.23030 4.34015 4.46927 4.59491 4.64381 4.87428 4.95802 5.02628 5.13025 5.13843 5.31971 5.33606 5.36757 5.39664 5.44581 5.60697 5.79195 6.01441 6.20862 6.21726 6.82804 6.85472 7.45590 8.94529 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.004227 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.240826 B = 6623.202351 C = 7294.956191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.275 3.725 10 N -0.983 5.983 11 C 0.149 3.851 12 C -0.184 4.184 13 C -0.178 4.178 14 C -0.160 4.160 15 S 2.719 3.281 16 O -0.986 6.986 17 O -0.994 6.994 18 C -0.770 4.770 19 C 0.174 3.826 20 N -0.493 5.493 21 H 0.447 0.553 22 C -0.060 4.060 23 C 0.568 3.432 24 O -0.534 6.534 25 O -0.505 6.505 26 C -0.015 4.015 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.215 0.785 38 H 0.440 0.560 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -17.371 -1.126 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.151 3.849 10 N -0.820 5.820 11 C 0.023 3.977 12 C -0.204 4.204 13 C -0.215 4.215 14 C -0.198 4.198 15 S 2.811 3.189 16 O -0.977 6.977 17 O -0.984 6.984 18 C -0.865 4.865 19 C 0.027 3.973 20 N -0.089 5.089 21 H 0.290 0.710 22 C -0.170 4.170 23 C 0.413 3.587 24 O -0.424 6.424 25 O -0.320 6.320 26 C -0.040 4.040 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.232 0.768 38 H 0.303 0.697 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.877 -16.946 -1.606 17.458 hybrid contribution -0.712 0.051 0.004 0.713 sum -4.589 -16.895 -1.602 17.580 Atomic orbital electron populations 1.69993 1.06970 1.27825 1.51432 1.25608 0.95692 1.02122 0.94783 0.85703 0.78974 0.79665 0.78256 1.20453 1.20250 1.19268 1.21849 0.93545 0.92404 1.50557 0.93025 1.18619 0.87036 0.81981 0.97236 1.57234 1.59503 1.44609 1.20689 1.20916 0.95301 0.96379 0.85107 1.22796 1.03507 1.02283 0.91770 1.23020 0.98491 1.00180 0.99806 1.23035 0.99631 0.97742 0.99363 1.00652 0.73306 0.72430 0.72482 1.93537 1.86560 1.59969 1.57620 1.93458 1.40062 1.78966 1.85916 1.31030 1.18062 1.15086 1.22287 1.22225 0.90626 0.90043 0.94456 1.42048 1.19987 1.06897 1.39937 0.70957 1.19394 0.96978 0.88750 1.11829 1.19128 0.78895 0.85675 0.74967 1.90982 1.48918 1.62072 1.40431 1.84507 1.39892 1.34705 1.72937 1.21055 0.96404 0.90049 0.96541 0.92553 0.95639 0.95345 0.89231 0.90380 0.88062 0.89206 0.88592 0.87549 0.87727 0.76829 0.69663 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.54 -29.89 9.38 25.60 0.24 -29.65 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.27 13.31 5.10 85.63 0.44 13.74 16 10 N -0.98 -39.90 2.77 -519.85 -1.44 -41.33 16 11 C 0.15 5.21 5.96 86.38 0.51 5.72 16 12 C -0.18 -5.41 6.01 -10.80 -0.06 -5.48 16 13 C -0.18 -4.78 10.18 30.62 0.31 -4.47 16 14 C -0.16 -3.76 10.25 30.62 0.31 -3.45 16 15 S 2.72 106.48 5.79 -56.49 -0.33 106.15 16 16 O -0.99 -45.27 16.82 -128.00 -2.15 -47.42 16 17 O -0.99 -41.27 16.42 -128.00 -2.10 -43.38 16 18 C -0.77 -23.28 6.18 22.01 0.14 -23.14 16 19 C 0.17 4.12 11.61 83.57 0.97 5.09 16 20 N -0.49 -8.90 6.07 -184.05 -1.12 -10.01 16 21 H 0.45 4.54 8.96 -92.70 -0.83 3.71 16 22 C -0.06 -1.36 7.10 40.32 0.29 -1.08 16 23 C 0.57 11.65 8.30 69.97 0.58 12.24 16 24 O -0.53 -14.27 17.67 19.43 0.34 -13.92 16 25 O -0.51 -5.90 13.44 -58.03 -0.78 -6.68 16 26 C -0.01 -0.42 10.25 22.59 0.23 -0.19 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.03 1.29 7.61 -2.39 -0.02 1.27 16 29 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 30 H 0.09 2.99 6.91 -2.39 -0.02 2.98 16 31 H 0.08 2.84 7.84 -2.39 -0.02 2.82 16 32 H 0.10 2.99 7.93 -2.38 -0.02 2.97 16 33 H 0.09 2.54 8.03 -2.39 -0.02 2.52 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.22 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.44 1.09 9.11 -74.06 -0.67 0.41 16 39 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -75.97 360.10 -1.24 -77.21 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.39 Total: 14.80 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.42 Total: -29.24 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -2.27 Total: -103.34 kcal Atomic # 8 Polarization: -106.71 SS G_CDS: -4.69 Total: -111.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 106.48 SS G_CDS: -0.33 Total: 106.15 kcal Total: -75.97 -1.24 -77.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761289671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.898 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds