Wall clock time and date at job start Tue Mar 31 2020 15:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48504 * 109.47064 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47212 * 29.99158 * 3 2 1 6 6 H 1.48502 * 109.47527 * 149.99315 * 3 2 1 7 7 C 1.40035 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99984 * 196.29388 * 7 2 1 9 9 C 1.41536 * 120.00001 * 16.29011 * 7 2 1 10 10 C 1.41178 * 121.00001 * 203.78894 * 9 7 2 11 11 C 1.37581 * 119.02274 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.11455 * 359.97438 * 11 10 9 13 13 C 1.32486 * 122.22644 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.58143 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99993 * 5.28296 * 14 13 12 16 16 O 1.21620 * 119.99940 * 355.08950 * 15 14 13 17 17 C 1.47244 * 119.99931 * 174.81265 * 15 14 13 18 18 C 1.39955 * 120.13580 * 0.27537 * 17 15 14 19 19 C 1.37890 * 119.97651 * 179.97438 * 18 17 15 20 20 C 1.39728 * 120.11804 * 359.97438 * 19 18 17 21 21 C 1.38611 * 120.14788 * 359.97438 * 20 19 18 22 22 C 1.38455 * 120.17915 * 359.76530 * 21 20 19 23 23 O 1.35729 * 120.07355 * 180.27542 * 22 21 20 24 24 O 1.36369 * 108.56640 * 179.97438 * 20 19 18 25 25 C 1.43959 * 105.55389 * 342.63655 * 24 20 19 26 26 O 1.36645 * 131.34313 * 179.97438 * 19 18 17 27 27 C 1.38623 * 120.83519 * 0.27389 * 13 12 11 28 28 H 0.96999 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.48775 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.44367 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00229 * 185.28641 * 14 13 12 32 32 H 1.08000 * 120.00677 * 0.02714 * 18 17 15 33 33 H 1.07994 * 119.90558 * 179.97438 * 21 20 19 34 34 H 0.96695 * 114.00234 * 270.22397 * 23 22 21 35 35 H 1.08998 * 110.55151 * 268.71105 * 25 24 20 36 36 H 1.09005 * 110.55646 * 145.87501 * 25 24 20 37 37 H 1.07999 * 120.60442 * 179.72270 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7002 7 6 2.0076 -1.2127 0.0005 8 1 3.0551 -1.2314 0.2630 9 6 1.3425 -2.4140 -0.3427 10 6 1.8220 -3.6641 0.1050 11 6 1.1434 -4.8063 -0.2525 12 7 0.0578 -4.7486 -1.0027 13 6 -0.4329 -3.6015 -1.4483 14 7 -1.5821 -3.6049 -2.2370 15 6 -2.2474 -4.7568 -2.4537 16 8 -1.7971 -5.8067 -2.0365 17 6 -3.5223 -4.7433 -3.1902 18 6 -4.0430 -3.5367 -3.6716 19 6 -5.2369 -3.5280 -4.3614 20 6 -5.9282 -4.7221 -4.5815 21 6 -5.4166 -5.9202 -4.1080 22 6 -4.2159 -5.9403 -3.4189 23 8 -3.7141 -7.1154 -2.9610 24 8 -7.0663 -4.4428 -5.2789 25 6 -7.2735 -3.0262 -5.1280 26 8 -5.9469 -2.5049 -4.9238 27 6 0.1857 -2.3985 -1.1453 28 1 -0.4849 0.8401 -0.0004 29 1 2.7085 -3.7230 0.7192 30 1 1.5040 -5.7662 0.0866 31 1 -1.9031 -2.7781 -2.6299 32 1 -3.5093 -2.6129 -3.5035 33 1 -5.9544 -6.8408 -4.2799 34 1 -4.0062 -7.3468 -2.0687 35 1 -7.9033 -2.8217 -4.2623 36 1 -7.7149 -2.6056 -6.0317 37 1 -0.2150 -1.4660 -1.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764348576.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:56 Heat of formation + Delta-G solvation = -60.821540 kcal Electronic energy + Delta-G solvation = -26614.022210 eV Core-core repulsion = 22516.458308 eV Total energy + Delta-G solvation = -4097.563902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46349 -40.09875 -38.75128 -37.42024 -36.61558 -36.01729 -34.33912 -33.75998 -31.18682 -30.52064 -29.51069 -28.42398 -26.18882 -26.01418 -24.12915 -23.13690 -22.04175 -21.67833 -20.06016 -19.08185 -18.33525 -17.94090 -17.53918 -17.43188 -16.28467 -16.00223 -15.66653 -15.23166 -15.03477 -14.73315 -14.61852 -14.28716 -14.24734 -14.09739 -13.85693 -13.33850 -13.24179 -12.86127 -12.78070 -12.62385 -12.29455 -12.00636 -11.46776 -11.25503 -10.97703 -10.88834 -10.84205 -10.29999 -10.16720 -9.78295 -9.46043 -9.37655 -9.16639 -8.25967 -8.02725 -7.75825 -7.05748 -6.83576 -4.63929 0.49169 0.85905 2.29436 2.57943 2.76546 2.99565 3.00396 3.03592 3.06307 3.24571 3.52840 3.81895 3.83084 4.05504 4.14394 4.34161 4.56589 4.65094 4.75039 4.82286 4.88482 5.14281 5.55939 5.65952 5.67571 5.73224 5.79766 5.93425 6.07653 6.54946 6.61797 6.72556 6.78755 6.91982 7.07724 7.35820 7.42597 7.60029 7.73850 7.89530 8.16878 8.38953 8.67056 8.71879 8.82895 9.65935 10.03722 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003231 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.465404 B = 8664.214568 C =10484.613275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.284 4.284 11 C 0.120 3.880 12 N -0.554 5.554 13 C 0.338 3.662 14 N -0.653 5.653 15 C 0.545 3.455 16 O -0.456 6.456 17 C -0.146 4.146 18 C -0.054 4.054 19 C 0.014 3.986 20 C 0.070 3.930 21 C -0.141 4.141 22 C 0.183 3.817 23 O -0.466 6.466 24 O -0.306 6.306 25 C 0.212 3.788 26 O -0.304 6.304 27 C -0.243 4.243 28 H 0.282 0.718 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.406 0.594 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.399 0.601 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 -2.505 -7.539 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.034 4.034 12 N -0.273 5.273 13 C 0.113 3.887 14 N -0.300 5.300 15 C 0.330 3.670 16 O -0.326 6.326 17 C -0.151 4.151 18 C -0.073 4.073 19 C -0.030 4.030 20 C 0.025 3.975 21 C -0.160 4.160 22 C 0.136 3.864 23 O -0.277 6.277 24 O -0.222 6.222 25 C 0.101 3.899 26 O -0.220 6.220 27 C -0.268 4.268 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.142 0.858 31 H 0.242 0.758 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.659 -3.879 -8.180 17.229 hybrid contribution 0.065 2.312 0.396 2.347 sum -14.594 -1.567 -7.784 16.614 Atomic orbital electron populations 1.69774 1.07692 1.29414 1.34444 1.25959 0.94776 1.01501 0.91852 0.86248 0.80515 0.80191 0.79433 1.19151 1.20218 1.18473 1.19594 0.97745 0.90612 1.40642 0.89922 1.17558 0.89860 0.92307 0.86747 1.21902 1.05139 0.93916 1.09832 1.21764 0.90839 0.96825 0.94011 1.67223 1.15463 1.26520 1.18108 1.18125 0.86969 0.90927 0.92652 1.43322 1.25942 1.10528 1.50213 1.17770 0.83502 0.84689 0.81067 1.90908 1.65926 1.29314 1.46407 1.20363 0.98170 0.92405 1.04115 1.20125 0.93196 0.98551 0.95448 1.19523 0.96637 0.85839 1.01047 1.19703 0.88137 0.94611 0.95047 1.20194 0.96638 0.96331 1.02810 1.17843 0.89129 0.85034 0.94419 1.84801 1.72014 1.34292 1.36624 1.87340 1.40871 1.26031 1.67910 1.25676 0.84880 0.75625 1.03752 1.87444 1.22486 1.34763 1.77349 1.21547 1.02420 0.95462 1.07370 0.90700 0.87951 0.85808 0.75842 0.83705 0.83451 0.74215 0.89567 0.84934 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.09 10.90 55.55 0.61 -18.48 16 2 C 0.08 1.86 5.21 -17.34 -0.09 1.77 16 3 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -11.54 9.12 -37.65 -0.34 -11.88 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 9 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 10 C -0.28 -6.90 9.90 -38.71 -0.38 -7.28 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 12 N -0.55 -13.99 7.85 -12.54 -0.10 -14.09 16 13 C 0.34 8.13 7.41 -154.77 -1.15 6.98 16 14 N -0.65 -12.87 5.33 -12.52 -0.07 -12.94 16 15 C 0.55 10.45 7.71 -12.60 -0.10 10.35 16 16 O -0.46 -10.25 13.39 -16.70 -0.22 -10.48 16 17 C -0.15 -2.18 5.89 -104.85 -0.62 -2.80 16 18 C -0.05 -0.69 9.54 -39.07 -0.37 -1.07 16 19 C 0.01 0.17 7.13 -39.15 -0.28 -0.11 16 20 C 0.07 0.82 7.15 -38.89 -0.28 0.55 16 21 C -0.14 -1.59 9.98 -39.36 -0.39 -1.99 16 22 C 0.18 2.46 6.71 -38.76 -0.26 2.20 16 23 O -0.47 -6.38 11.56 -40.85 -0.47 -6.85 16 24 O -0.31 -3.20 11.39 -45.25 -0.52 -3.71 16 25 C 0.21 1.63 8.88 101.05 0.90 2.52 16 26 O -0.30 -3.41 11.41 -46.16 -0.53 -3.94 16 27 C -0.24 -6.08 8.62 -38.47 -0.33 -6.41 16 28 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 29 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 31 H 0.41 6.61 6.73 -40.82 -0.27 6.34 16 32 H 0.15 1.66 6.41 -52.49 -0.34 1.32 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.40 3.88 9.06 45.56 0.41 4.29 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.13 3.16 6.19 -52.49 -0.33 2.84 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -33.05 327.78 -8.06 -41.11 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -2.19 Total: 13.16 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.49 Total: -1.39 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.44 Total: -45.51 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.74 Total: -24.97 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.05 -8.06 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764348576.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.708 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds